Repair of DNA Double Strand Breaks: In Vivo Biochemistry

Methods in Enzymology

Volumn 408, Issue , 2006, Pages 416-429

  Sugawara, Neal ^a   Haber, James E ^a  

^a NONE

Author keywords

[No Author keywords available]

Indexed keywords

COHESIN; DOUBLE STRANDED DNA; GALACTOSE;

ADAPTATION; BIOCHEMISTRY; BUDDING; CELL CYCLE ARREST; CHROMATIN ASSEMBLY AND DISASSEMBLY; CHROMATIN IMMUNOPRECIPITATION; CHROMOSOME; CONTROLLED STUDY; DNA REPAIR; DNA STRAND BREAKAGE; DNA SYNTHESIS; GENE CONVERSION; GENETIC RECOMBINATION; GENOMICS; MISMATCH REPAIR; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN FUNCTION; REVIEW; SEQUENCE HOMOLOGY; SLOT BLOT HYBRIDIZATION; SOUTHERN BLOTTING; YEAST;

DEOXYRIBONUCLEASES, TYPE II SITE-SPECIFIC; DNA DAMAGE; DNA REPAIR; RECOMBINANT FUSION PROTEINS; RECOMBINATION, GENETIC; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS;

SACCHAROMYCETALES;

EID: 33745208227     PISSN: 00766879     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0076-6879(06)08026-8     Document Type: Review

References (31)

1. Aylon Y., and Kupiec M. DSB repair: The yeast paradigm. DNA Repair (Amst.) 3 (2004) 797-815
2. Bassing C.H., and Alt F.W. The cellular response to general and programmed DNA double strand breaks. DNA Repair (Amst.) 3 (2004) 781-796
3. Boeke J.D., Trueheart J., Natsoulis G., and Fink G.R. 5-Fluororotic acid as a selective agent in yeast molecular genetics. Methods Enzymol. 154 (1987) 164-175
4. Booth C., Griffith E., Brady G., and Lydall D. Quantitative amplification of single-stranded DNA (QAOS) demonstrates that cdc13-1 mutants generate ssDNA in a telomere to centromere direction. Nucleic Acids Res. 29 (2001) 4414-4422
5. Church G.M., and Gilbert W. Genomic sequencing. Proc. Natl. Acad. Sci. USA 81 (1984) 1991-1995
6. Dionne I., and Wellinger R.J. Cell cycle-regulated generation of single-stranded G-rich DNA in the absence of telomerase. Proc. Natl. Acad. Sci. USA 93 (1996) 13902-13907
7. Douglas H.C., and Pelroy G. A gene controlling the inducibility of galactose pathway enzymes in Saccharomyces cerevisiae. Biochim. Biophys. Acta 68 (1963) 155-156
8. Evans E., Sugawara N., Haber J.E., and Alani E. The Saccharomyces cerevisiae Msh2 mismatch repair protein localizes to recombination intermediates in vivo. Mol. Cell. 5 (2000) 789-799
9. Evans I.H., and Wilkie D. Mitochondrial role in the induction of sugar utilization in Saccharomyces cerevisiae. In: Saccone C., and Kroon A.M. (Eds). "Function of Mitochondrial DNA" (1976), North-Holland, New York 209-217
10. Frankfurt O.S., Robb J.A., Sugarbaker E.V., and Villa L. Monoclonal antibody to single-stranded DNA is a specific and sensitive cellular marker of apoptosis. Exp. Cell Res. 226 (1996) 387-397
11. Garvik B., Carson M., and Hartwell L. Single-stranded DNA arising at telomeres in cdc13 mutants may constitute a specific signal for the RAD9 checkpoint. Mol. Cell. Biol. 15 (1995) 6128-6138
12. Haber J.E. Mating-type gene switching in Saccharomyces cerevisiae. Annu. Rev. Genet. 32 (1998) 561-599
13. Haber J.E. Lucky breaks: Analysis of recombination in Saccharomyces. Mutat. Res. 451 (2000) 53-69
14. Herskowitz I., and Jensen R.E. Putting the HO gene to work: Practical uses for mating-type switching. Methods Enzymol. 194 (1991) 132-146
15. Jensen R.E., and Herskowitz I. Directionality and regulation of cassette substitution in yeast. Cold Spring Harb. Symp. Quant. Biol. 49 (1984) 97-104
16. Johnson R.D., and Jasin M. Double-strand-break-induced homologous recombination in mammalian cells. Biochem. Soc. Trans. 29 (2001) 196-201
17. Lee S.E., Moore J.K., Holmes A., Umezu K., Kolodner R., and Haber J.E. Saccharomyces Ku70, Mre11/Rad50 and RPA proteins regulate adaptation to G2/M arrest DNA damage. Cell 94 (1998) 399-409
18. Mahler H.R., and Wilkie D. Mitochondrial control of sugar utilization in Saccharomyces cerevisiae. Plasmid 1 (1978) 125-133
19. Malkova A., Naylor M.L., Yamaguchi M., Ira G., and Haber J.E. RAD51-dependent break-induced replication differs in kinetics and checkpoint responses from RAD51-mediated gene conversion. Mol. Cell. Biol. 25 (2005) 933-944
20. Nickoloff J.A., Singer J.D., Hoekstra M.F., and Heffron F. Double-strand breaks stimulate alternative mechanisms of recombination repair. J. Mol. Biol. 207 (1989) 527-541
21. Paques F., and Haber J.E. Two pathways for removal of nonhomologous DNA ends during double-strand break repair in Saccharomyces cerevisiae. Mol. Cell. Biol. 17 (1997) 6765-6771
22. Pierce A.J., Stark J.M., Araujo F.D., Moynahan M.E., Berwick M., and Jasin M. Double-strand breaks and tumorigenesis. Trends Cell Biol. 11 (2001) S52-S59
23. Raderschall E., Golub E.I., and Haaf T. Nuclear foci of mammalian recombination proteins are located at single-stranded DNA regions formed after DNA damage. Proc. Natl. Acad. Sci. USA 96 (1999) 1921-1926
24. Sambrook J., Fritsch E.F., and Maniatis T. "Molecular Cloning: A Laboratory Manual." (1989), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
25. Sandell L.L., and Zakian V.A. Loss of a yeast telomere: Arrest, recovery, and chromosome loss. Cell 75 (1993) 729-739
26. Strahl-Bolsinger S., Hecht A., Luo K., and Grunstein M. SIR2 and SIR4 interactions differ in core and extended telomeric heterochromatin in yeast. Genes Dev. 11 (1997) 83-93
27. Sugawara N., and Haber J.E. Characterization of double-strand break-induced recombination: Homology requirements and single-stranded DNA formation. Mol. Cell. Biol. 12 (1992) 563-575
28. Sugawara N., Wang X., and Haber J.E. In vivo roles of Rad52, Rad54, and Rad55 proteins in Rad51-mediated recombination. Mol. Cell 12 (2003) 209-219
29. Tapiero H., Leibowitch S.A., Shaool D., Monier M.N., and Harel J. Isolation of single stranded DNA related to the transcriptional activity of animal cells. Nucleic Acids Res. 3 (1976) 953-963
30. Wang X., and Haber J.E. Role of Saccharomyces single-stranded DNA-binding protein RPA in the strand invasion step of double-strand break repair. PLoS Biol. 2 (2004) E21
31. White C.I., and Haber J.E. Intermediates of recombination during mating type switching in Saccharomyces cerevisiae. EMBO J. 9 (1990) 663-673