Role of Saccharomyces single-stranded DNA-binding protein RPA in the strand invasion step of double-strand break repair

PLoS Biology

Volumn 2, Issue 1, 2004, Pages

  Wang, Xuan ^a   Haber, James E ^a  

^a BRANDEIS UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED DNA; ENDONUCLEASE; EXONUCLEASE; REPLICATION PROTEIN A; SINGLE STRANDED DNA; DNA; PRIMER DNA; RAD51 PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CHROMATIN; CHROMOSOME PAIRING; CONTROLLED STUDY; DNA RECOMBINATION; DNA REPAIR; DNA REPLICATION; DNA STRAND BREAKAGE; ENZYME ACTIVITY; GENE LOCUS; GENE MUTATION; IMMUNOPRECIPITATION; KINETICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PROTEIN BINDING; PROTEIN FUNCTION; PROTEIN INDUCTION; SACCHAROMYCES; YEAST; BINDING COMPETITION; CHEMISTRY; CHROMATIN IMMUNOPRECIPITATION; DNA DAMAGE; GENETIC RECOMBINATION; GENETICS; GENOME; METABOLISM; MUTATION; PHYSIOLOGY; POLYMERASE CHAIN REACTION; SACCHAROMYCES CEREVISIAE;

SACCHAROMYCES;

BINDING, COMPETITIVE; CHROMATIN IMMUNOPRECIPITATION; DNA; DNA DAMAGE; DNA PRIMERS; DNA REPAIR; DNA REPLICATION; DNA, SINGLE-STRANDED; GENOME, FUNGAL; KINETICS; MUTATION; POLYMERASE CHAIN REACTION; PROTEIN BINDING; RAD51 RECOMBINASE; RECOMBINATION, GENETIC; REPLICATION PROTEIN A; SACCHAROMYCES CEREVISIAE;

EID: 19344366752     PISSN: 15449173     EISSN: None     Source Type: Journal    
DOI: 10.1371/journal.pbio.0020021     Document Type: Article

References (53)

1. Alani E, Thresher R, Griffith JD, Kolodner RD (1992) Characterization of DNA-binding and strand-exchange stimulation properties of y-RPA, a yeast single-strand-DNA-binding protein. J Mol Biol 227: 54-71. Find this article online
2. Aparicio OM, Weinstein DM, Bell SP (1997) Components and dynamics of DNA replication complexes in S. cerevisiae: Redistribution of MCM proteins and Cdc45p during S phase. Cell 91: 59-69. Find this article online
3. Bianco PR, Tracy RB, Kowalczykowski SC (1998) DNA strand exchange proteins: A biochemical and physical comparison. Front Biosci 3: D570-D603. Find this article online
4. Brill SJ, Stillman B (1991) Replication factor-A from Saccharomyces cerevisiae is encoded by three essential genes coordinately expressed at S phase. Genes Dev 5: 1589-1600. Find this article online
5. Dedon PC, Soults JA, Allis CD, Gorovsky MA (1991) A simplified formaldehyde fixation and immunoprecipitation technique for studying protein-DNA interactions. Anal Biochem 197: 83-90. Find this article online
6. Eggler AL, Inman RB, Cox MM (2002) The Rad51-dependent pairing of long DNA substrates is stabilized by replication protein A. J Biol Chem 277: 39280-39288. Find this article online
7. Firmenich AA, Elias-Arnanz M, Berg P (1995) A novel allele of Saccharomyces cerevisiae RFA1 that is deficient in recombination and repair and suppressible by RAD52. Mol Cell Biol 15: 1620-1631. Find this article online
8. Frank-Vaillant M, Marcand S (2002) Transient stability of DNA ends allows nonhomologous end joining to precede homologous recombination. Mol Cell 10: 1189-1199. Find this article online
9. Gasior SL, Wong AK, Kora Y, Shinohara A, Bishop DK (1998) Rad52 associates with RPA and functions with rad55 and rad57 to assemble meiotic recombination complexes. Genes Dev 12: 2208-2221. Find this article online
10. Gasior SL, Olivares H, Ear U, Hari DM, Weichselbaum R, et al. (2001) Assembly of RecA-like recombinases: Distinct roles for mediator proteins in mitosis and meiosis. Proc Natl Acad Sci U S A 98: 8411-8418. Find this article online
11. Golub EI, Gupta RC, Haaf T, Wold MS, Radding CM (1998) Interaction of human rad51 recombination protein with single-stranded DNA binding protein, RPA. Nucleic Acids Res 26: 5388-5393. Find this article online
12. Haber JE (1995) In vivo biochemistry: Physical monitoring of recombination induced by site-specific endonucleases. Bioessays 17: 609-620. Find this article online
13. Haber JE (2000) Lucky breaks: Analysis of recombination in Saccharomyces. Mutat Res 451: 53-69. Find this article online
14. Haber JE (2002a) Switching of Saccharomyces cerevisiae mating-type genes. In: Lambowitz AM, editor. Mobile DNA II. Washington, DC: ASM Press. pp. 927-952.
15. Haber JE (2002b) Uses and abuses of HO endonuclease. Methods Enzymol 350: 141-164. Find this article online
16. Heyer WD, Kolodner RD (1989) Purification and characterization of a protein from Saccharomyces cerevisiae that binds tightly to single-stranded DNA and stimulates a cognate strand exchange protein. Biochemistry 28: 2856-2862. Find this article online
17. Heyer WD, Rao MR, Erdile LF, Kelly TJ, Kolodner RD (1990) An essential Saccharomyces cerevisiae single-stranded DNA binding protein is homologous to the large subunit of human RP-A. EMBO J 9: 2321-2329. Find this article online
18. Jensen R, Sprague GF, Herskowitz I (1983) Regulation of yeast mating-type interconversion: Feedback control of HO gene expression by the mating-type locus. Proc Natl Acad Sci U S A 80: 3035-3039. Find this article online
19. Kantake N, Sugiyama T, Kolodner RD, Kowalczykowski SC (2003) The recombination-deficient mutant RPA (rfa1-t11) is displaced slowly from single-stranded DNA by Rad51 protein. J Biol Chem 278: 23410-23417. Find this article online
20. Kowalczykowski SC, Krupp RA (1987) Effects of Escherichia coli SSB protein on the single-stranded DNA-dependent ATPase activity of Escherichia coli RecA protein: Evidence that SSB protein facilitates the binding of RecA protein to regions of secondary structure within single-stranded DNA. J Mol Biol 193: 97-113. Find this article online
21. Kowalczykowski SC, Clow J, Somani R, Varghese A (1987) Effects of the Escherichia coli SSB protein on the binding of Escherichia coli RecA protein to single-stranded DNA: Demonstration of competitive binding and the lack of a specific protein-protein interaction. J Mol Biol 193: 81-95. Find this article online
22. Kuzminov A (1999) Recombinational repair of DNA damage in Escherichia coli and bacteriophage λ. Microbiol Mol Biol Rev 63: 751-813. Find this article online
23. Lavery PE, Kowalczykowski SC (1992) A postsynaptic role for single-stranded DNA-binding protein in recA protein-promoted DNA strand exchange. J Biol Chem 267: 9315-9320. Find this article online
24. Lee SE, Moore JK, Holmes A, Umezu K, Kolodner RD, et al. (1998) Saccharomyces Ku70, mre11/rad50 and RPA proteins regulate adaptation to G2/M arrest after DNA damage. Cell 94: 399-409. Find this article online
25. Lee SE, Pellicioli A, Malkova A, Foiani M, Haber JE (2001) The Saccharomyces recombination protein Tid1p is required for adaptation from G2/M arrest induced by a double-strand break. Curr Biol 11: 1053-1057. Find this article online
26. Mazin AV, Bornarth CJ, Solinger JA, Heyer WD, Kowalczykowski SC (2000) Rad54 protein is targeted to pairing loci by the Rad51 nucleoprotein filament. Mol Cell 6: 583-592. Find this article online
27. Morrical SW, Cox MM (1990) Stabilization of recA protein-ssDNA complexes by the single-stranded DNA binding protein of Escherichia coli. Biochemistry 29: 837-843. Find this article online
28. New JH, Sugiyama T, Zaitseva E, Kowalczykowski SC (1998) Rad52 protein stimulates DNA strand exchange by Rad51 and replication protein A. Nature 391: 407-410. Find this article online
29. Ogawa T, Yu X, Shinohara A, Egelman EH (1993) Similarity of the yeast RAD51 filament to the bacterial RecA filament. Science 259: 1896-1899. Find this article online
30. Pâques F, Haber JE (1999) Multiple pathways of recombination induced by double-strand breaks in Saccharomyces cerevisiae. Microbiol Mol Biol Rev 63: 349-404. Find this article online
31. Raderschall E, Golub EI, Haaf T (1999) Nuclear foci of mammalian recombination proteins are located at single-stranded DNA regions formed after DNA damage. Proc Natl Acad Sci U S A 96: 1921-1926. Find this article online
32. Sandell LL, Zakian VA (1993) Loss of a yeast telomere: Arrest, recovery, and chromosome loss. Cell 75: 729-739. Find this article online
33. Shibata T, Das Gupta C, Cunningham RP, Radding CM (1980) Homologous pairing in genetic recombination: Formation of D loops by combined action of recA protein and a helix-destabilizing protein. Proc Natl Acad Sci U S A 77: 2606-2610. Find this article online
34. Shinohara A, Ogawa T (1998) Stimulation by Rad52 of yeast Rad51-mediated recombination. Nature 391: 404-407. Find this article online
35. Shinohara A, Ogawa H, Ogawa T (1992) Rad51 protein involved in repair and recombination in S. cerevisiae is a RecA-like protein. Cell 69: 457-470. Find this article online
36. Song B, Sung P (2000) Functional interactions among yeast Rad51 recombinase, Rad52 mediator, and replication protein A in DNA strand exchange. J Biol Chem 275: 15895-15904. Find this article online
37. Soustelle C, Vedel M, Kolodner RD, Nicolas A (2002) Replication protein A is required for meiotic recombination in Saccharomyces cerevisiae. Genetics 161: 535-547. Find this article online
38. Sugawara N, Wang X, Haber JE (2003) In vivo roles of Rad52, Rad54, and Rad55 proteins in Rad51-mediated recombination. Mol Cell 12: 209-219. Find this article online
39. Sugiyama T, Kowalczykowski SC (2002) Rad52 protein associates with replication protein A (RPA)-single-stranded DNA to accelerate Rad51-mediated displacement of RPA and presynaptic complex formation. J Biol Chem 277: 31663-31672. Find this article online
40. Sugiyama T, Zaitseva EM, Kowalczykowski SC (1997) A single-stranded DNA-binding protein is needed for efficient presynaptic complex formation by the Saccharomyces cerevisiae Rad51 protein. J Biol Chem 272: 7940-7945. Find this article online
41. Sugiyama T, New JH, Kowalczykowski SC (1998) DNA annealing by RAD52 protein is stimulated by specific interaction with the complex of replication protein A and single-stranded DNA. Proc Natl Acad Sci U S A 95: 6049-6054. Find this article online
42. Sung P (1994) Catalysis of ATP-dependent homologous DNA pairing and strand exchange by yeast RAD51 protein. Science 265: 1241-1243. Find this article online
43. Sung P (1997a) Function of yeast Rad52 protein as a mediator between replication protein A and the Rad51 recombinase. J Biol Chem 272: 28194-28197. Find this article online
44. Sung P (1997b) Yeast Rad55 and Rad57 proteins form a heterodimer that functions with replication protein A to promote DNA strand exchange by Rad51 recombinase. Genes Dev 11: 1111-1121. Find this article online
45. Symington LS (2002) Role of RAD52 epistasis group genes in homologous recombination and double-strand break repair. Microbiol Mol Biol Rev 66: 630-670. Find this article online
46. Umezu K, Chi NW, Kolodner RD (1993) Biochemical interaction of the Escherichia coli RecF, RecO, and RecR proteins with RecA protein and single-stranded DNA binding protein. Proc Natl Acad Sci U S A 90: 3875-3879. Find this article online
47. Umezu K, Sugawara N, Chen C, Haber JE, Kolodner RD (1998) Genetic analysis of yeast RPA1 reveals its multiple functions in DNA metabolism. Genetics 148: 989-1005. Find this article online
48. Wach A, Brachat A, Pohlmann R, Philippsen P (1994) New heterologous modules for classical or PCR-based gene disruptions in Saccharomyces cerevisiae. Yeast 10: 1793-1808. Find this article online
49. West SC, Cassuto E, Howard-Flanders P (1981) RecA protein promotes homologous-pairing and strand-exchange reactions between duplex DNA molecules. Proc Natl Acad Sci U S A 78: 2100-2104. Find this article online
50. White CI, Haber JE (1990) Intermediates of recombination during mating type switching in Saccharomyces cerevisiae. EMBO J 9: 663-673. Find this article online
51. Wold MS (1997) Replication protein A: A heterotrimeric, single-stranded DNA-binding protein required for eukaryotic DNA metabolism. Annu Rev Biochem 66: 61-92. Find this article online
52. Wold MS, Weinberg DH, Virshup DM, Li JJ, Kelly TJ (1989) Identification of cellular proteins required for simian virus 40 DNA replication. J Biol Chem 264: 2801-2809. Find this article online
53. Wolner B, van Komen S, Sung P, Peterson CL (2003) Recruitment of the recombinational repair machinery to a DNA double-strand break in yeast. Mol Cell 12: 221-232. Find this article online