Agrobacterium T-DNA-mediated integration and gene replacement in the brown rot pathogen Monilinia fructicola

Current Genetics

Volumn 49, Issue 5, 2006, Pages 309-322

  Lee, Miin Huey ^a,b   Bostock, Richard M ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b NATIONAL CHUNG HSING UNIVERSITY   (Taiwan)

Author keywords

Cutinase; Filler; Fungi; Multinucleate; Nucleotide deletion; T DNA tandem integration

Indexed keywords

BACTERIAL DNA; CUTINASE; FUNGAL DNA; KANAMYCIN KINASE; KANAMYCIN KINASE II; UNCLASSIFIED DRUG;

3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; ARTICLE; BACTERIAL BROWN ROT; BACTERIAL SPORE; BIOTRANSFORMATION; CONTROLLED STUDY; DNA INTEGRATION; DNA RECOMBINATION; DNA SEQUENCE; DNA TRANSFER; GENE DISRUPTION; GENE LOCUS; GENE TARGETING; MONILINIA FRUCTICOLA; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RHIZOBIUM; SEQUENCE ALIGNMENT; SOUTHERN BLOTTING; STONE FRUIT;

ASCOMYCOTA; BASE SEQUENCE; CARBOXYLIC ESTER HYDROLASES; CELL NUCLEUS; DNA, BACTERIAL; DRUG RESISTANCE, FUNGAL; GENES, FUNGAL; GENETIC VECTORS; GENOME, FUNGAL; KANAMYCIN KINASE; MOLECULAR SEQUENCE DATA; MUTAGENESIS, INSERTIONAL; NEOMYCIN; PLANT DISEASES; RECOMBINATION, GENETIC; REPETITIVE SEQUENCES, NUCLEIC ACID; RHIZOBIUM RADIOBACTER; TRANSFORMATION, GENETIC;

AGROBACTERIUM; AGROBACTERIUM TUMEFACIENS; FUNGI; MONILINIA FRUCTICOLA;

EID: 33745065868     PISSN: 01728083     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00294-006-0059-0     Document Type: Article

References (50)

1. Ahn N, Kim S, Choi W, Im K-H, Lee Y-H (2004) Extracellular matrix protein gene, EMP1, is required for appressorium formation and pathogenicity of the rice blast fungus, Magnaporthe grisea. Mol Cells 17:166-173
2. Amey RC, Mills PR, Bailey A, Foster GD (2003) Investigating the role of a Verticillium fungicola beta-1,6-glucanase during infection of Agaricus bisporus using targeted gene disruption. Fungal Genet Biol 39:264-275
3. Asch DK, Kinsey JA (1990) Relationship of vector insert size to homologous integration during transformation of Neurospora crassa with the cloned am gdh gene. Mol Gen Genet 221:37-43
4. van Attikum H, Hooykaas PJJ (2003) Genetic requirements for the targeted integration of Agrobacterium T-DNA in Saccharomyces cerevisiae. Nucleic Acids Res 31:826-832
5. van Attikum H, Bundock P, Hooykaas PJJ (2001) Non-homologous end-joining proteins are required for Agrobacterium T-DNA integration. EMBO J 20:6550-6558
6. Bird D, Bradshaw R (1997) Gene targeting is locus dependent in the filamentous fungus Aspergillus nidulans. Mol Gen Genet 255:219-225
7. Bostock RM, Wilcox SM, Wang G, Adaskaveg JE (1999) Suppression of Monilinia fructicola cutinase production by peach fruit surface phenolic acids. Physiol Mol Plant Pathol 54:37-50
8. Bundock P, Hooykaas PJJ (1996) Integration of Agrobacterium tumefaciens T-DNA in the Saccharomyces cerevisiae genome by illegitimate recombination. Proc Natl Acad Sci USA 93:15272-15275
9. Bundock P, Den Dulk-Ras A, Beijersbergen A, Hooykaas PJJ (1995) Trans-kingdom T-DNA transfer from Agrobacterium tumefaciens to Saccharomyces cerevisiae. Embo J 14:3206-3214
10. Cluster PD, O'Dell M, Metzlaff M, Flavell RB (1996) Details of T-DNA structural organization from a transgenic Petunia population exhibiting co-suppression. Plant Mol Biol 32:1197-1203
11. Covert SF, Kapoor P, Lee M-H, Briley A, Nairn CJ (2001) Agrobacterium tumefaciens -mediated transformation of Fusarium circinatum. Mycol Res 105:259-264
12. Curtis KM (1928) The morphological aspect of resistance to brown rot in stone fruit. Ann Bot 42:39-68
13. Dai Q, Sun Z, Schnabel G (2003) Development of spontaneous hygromycin B resistance in Monilinia fructicola and its impact on growth rate, morphology, susceptibility to demethylation inhibitor fungicides, and sporulation. Phytopathology 93:1354-1359
14. Davis RH (2000) Neurospora: Contributions of a model organism. Oxford University Press, New York, pp 333
15. de Groot MJA, Bundock P, Hooykaas PJJ, Beijersbergen AGM (1998) Agrobacterium tumefaciens-mediated transformation of filamentous fungi. Nat Biotech 16:839-842
16. De Neve M, De Buck S, Jacobs A, Van Montagu M, Depicker A (1997) T-DNA integration patterns in co-transformed plant cells suggest that T-DNA repeats originate from co-integration of separate T-DNAs. Plant J 11:15-29
17. Dev K, Maheshwari R (2002) Transformation in heterokaryons of Neurospora crassa is nuclear rather than cellular phenomenon. Curr Micro 44:309-313
18. Dietz-Pfeilstetter A, Arndt N, Kay V, Bode J (2003) Molecular structure and regulatory potential of a T-DNA integration site in petunia. Transgenic Res 12:83-99
19. Durrenberger F, Crameri A, Hohn B, Koukolikova-Nicola Z (1989) Covalently bound Vir-D2 protein of Agrobacterium tumefaciens protects the T-DNA from exonucleolytic degradation. Proc Natl Acad Sci USA 86:9154-9158
20. Gelvin SB (2003) Agrobacterium-mediated plant transformation: The biology behind the "gene-jockeying" tool. Microbiol Mol Biol Rev 67:16-37
21. Gray M, Honigberg SM (2001) Effect of chromosomal locus, GC content and length of homology on PCR-mediated targeted gene replacement in Saccharomyces. Nuc Acids Res 29:5156-5162
22. Hanif M, Pardo AG, Gorfer M, Raudaskoski M (2002) T-DNA transfer and integration in the ectomycorrhizal fungus Suillus bovinus using hygromycin B as a selectable marker. Curr Genet 41:183-188
23. Hellens R, Mullineaux P, Klee H (2000) A guide to Agrobacterium binary Ti vectors. Trends Plant Sci 5:446-451
24. Jorgensen R, Snyder C, Jones JDG (1987) T DNA is organized predominantly in inverted repeat structures in plants transformed with Agrobacterium tumefaciens C58 derivatives. Mol Gen Genet 207:471-477
25. van Kan JAL, Van't Klooster JW, Wagemakers CAM, Dees DCT, Van Der Vlugt-Bergmans CJB (1997) Cutinase A of Botrytis cinerea is expressed, but not essential, during penetration of Gerbera and tomato. Mol Plant Microbe Inter 10:30-38
26. Krizkova L, Hrouda M (1998) Direct repeats of T-DNA integrated in tobacco chromosome: Characterization of junction regions. Plant J 16:673-680
27. Leclerque A et al (2004) Agrobacterium-mediated insertional mutagenesis (AIM) of the entomopathogenic fungus Beauveria bassiana. Curr Genet 45:111-119
28. Lee Y-W, Jin S, Sim W-S, Nester EW (1995) Genetic evidence for direct sensing of phenolic compounds by the VirA protein of Agrobacterium tumefaciens. Proc Natl Acad Sci USA 92:12245-12249
29. Longtine MS et al (1998) Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast 14:953-961
30. Maheshwari R (1999) Microconidia of Neurospora crassa. Fungal Genet Biol 26:1-18
31. Malonek S, Meinhardt F (2001) Agrobacterium tumefaciens-mediated genetic transformation of the phytopathogenic ascomycete Calonectria morganii. Curr Genet 40:152-155
32. Mayerhofer R, Koncz-Kalman Z, Nawrath C, Bakkeren G, Crameri A, Angelis K, Redei GP, Schell J, Hohn B, Koncz C (1991) T-DNA integration: A mode of illegitimate recombination in plants. EMBO J 10:697-704
33. Meyer V, Mueller D, Strowig T, Stahl U (2003) Comparison of different transformation methods for Aspergillus giganteus. Curr Genet 43:371-377
34. Michielse CB, Ram AFJ, Hooykaas PJJ, van den Hondel CAMJJ (2004a) Agrobacterium -mediated transformation of Aspergillus awamori in the absence of full-length VirD2, VirC2, or VirE2 leads to insertion of aberrant T-DNA structures. J Bact 186:2038-2045
35. Michielse CB, Ram AFJ, van den Hondel CAMJJ (2004b) The Aspergillus nidulans amdS gene as a marker for the identification of multicopy T-DNA integration events in Agrobacterium-mediated transformation of Aspergillus awamori. Curr Genet 45:399-403
36. Michielse CB, Arentshorst M, Ram AFJ, van den Hondel CAMJJ (2005a) Agrobacterium-mediated transformation leads to improved gene replacement efficiency in Aspergillus awamori. Fungal Genet Biol 42:9-19
37. Michielse CD, Hooykaas PJJ, van den Hondel CAMJJ, Ram AFJ (2005b) Agrobacterium-mediated transformation as a tool for functional genomics in fungi. Curr Genet 48:1-17
38. Mikosch TSP, Lavrijssen B, Sonnenberg ASM, van Griensven LJLD (2001) Transformation of the cultivated mushroom Agaricus bisporus (Lange) using T-DNA from Agrobacterium tumefaciens. Curr Genet 39:35-39
39. Mullins ED, Chen X, Romaine P, Raina R, Geiser DM, Kang S (2001) Agrobacterium-mediated transformation of Fusarium oxysporum: An efficient tool for insertional mutagenesis and gene transfer. Phytopathology 91:173-180
40. Ninomiya Y, Suzuki K, Ishii C, Inoue H (2004) Highly efficient gene replacements in Neurospora strains deficient for nonhomologous end-joining. Proc Natl Acad Sci USA 101:12248-12253
41. Ogawa JM, English H (1991) Diseases of temperate zone tree fruit and nut crops. University of California, Division of Agriculture and Natural Resources, Oakland, Publication 3345
42. Phillips DJ, Margosan DA, Mackey BE (1989) Volume, nuclear number, and aggressiveness of conidia of Monilinia fructicola produced on media of varied glucose-concentrations at 15 C and 25 C. Phytopathology 79:401-403
43. Pratt RJ, Aramayo R (2002) Improving the efficiency of gene replacements in Neurospora crassa: A first step towards a large-scale functional genomics project. Fungal Genet Biol 37:56-71
44. Risseeuw E, Franke-Van Dijk MEI, Hooykaas PJJ (1996) Integration of an insertion-type transferred DNA vector from Agrobacterium tumefaciens into the Saccharomyces cerevisiae genome by Gap repair. Mol Cell Biol 16:5924-5932
45. Rolland S, Jobic C, Fevre M, Bruel C (2003) Agrobacterium mediated transformation of Botrytis cinerea, simple purification of monokaryotic transformants and rapid conidia-based identification of the transfer-DNA host genomic DNA flanking sequences. Curr Genet 44:164-171
46. Salomon S, Puchta H (1998) Capture of genomic and T-DNA sequences during double-strand break repair in somatic plant cells. EMBO J 17:6086-6095
47. Sullivan TD, Rooney PJ, Klein BS (2002) Agrobacterium tumefaciens integrates transfer DNA into single chromosomal sites of dimorphic fungi and yields homokaryotic progeny from multinucleate yeast. Euk Cell 1:895-905
48. Tinland B, Schoumacher F, Gloeckler V, Bravo-Angel AM, Hohn B (1995) The Agrobacterium tumefaciens virulence D2 protein is responsible for precise integration of T-DNA into the plant genome. EMBO J 14:3585-3595
49. Tzfira T, Li J, Lacroix B, Citovsky V (2004) Agrobacterium T-DNA integration: Molecules and models. Trends Genet 20:375-383
50. Wang GY, Michailides TJ, Hammock BD, Lee Y-M, Bostock RM (2002) Molecular cloning, characterization, and expression of a redox-responsive cutinase from Monilinia fructicola (Wint.) Honey. Fungal Genet Biol 35:261-276