Genetic requirements for the targeted integration of Agrobacterium T-DNA in Saccharomyces cerevisiae

Nucleic Acids Research

Volumn 31, Issue 3, 2003, Pages 826-832

  van Attikum, Haico ^a   Hooykaas, Paul J J ^a  

^a LEIDEN UNIVERSITY   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; RAD51 PROTEIN;

CONTROLLED STUDY; DNA INTEGRATION; DNA TRANSFER; GENOME ANALYSIS; HOMOLOGOUS RECOMBINATION; MICROBIAL GENETICS; NONHUMAN; PRIORITY JOURNAL; REVIEW; RHIZOBIUM RADIOBACTER; SACCHAROMYCES CEREVISIAE; YEAST CELL;

DNA REPAIR; DNA, BACTERIAL; DNA-BINDING PROTEINS; GENE TARGETING; GENES, FUNGAL; GENETIC VECTORS; MUTATION; RAD51 RECOMBINASE; RAD52 DNA REPAIR AND RECOMBINATION PROTEIN; RECOMBINATION, GENETIC; RHIZOBIUM RADIOBACTER; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS;

AGROBACTERIUM; AGROBACTERIUM TUMEFACIENS; BACTERIA (MICROORGANISMS); NEGIBACTERIA; SACCHAROMYCES CEREVISIAE;

EID: 0037329774     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg183     Document Type: Review

References (35)

1. Tzfira,T., Rhee,Y., Chen,M.H., Kunik,T. and Citovsky,V. (2000) Nucleic acid transport in plant-microbe interactions: the molecules that walk through the walls. Annu. Rev. Microbiol., 54, 187-219.
2. Zhu,J., Oger,P.M., Schrammeijer,B., Hooykaas,P.J.J., Farrand,S. and Winans,S. (2000) The bases of crown gall tumorigenesis. J. Bacteriol., 182, 3885-3895.
3. Tinland,B. and Hohn,B. (1995) Recombination between prokaryotic and eukaryotic DNA: integration of Agrobacterium tumefaciens T-DNA into the plant genome. In Setlow,J.K. (ed.), Genetic Engineering. Plenum Press, New York, NY, pp. 209-229.
4. Offringa,R., De Groot,M.J.A., Haagsman,H.J., Does,M.P., Van den Elzen,P.J.M. and Hooykaas,P.J.J. (1990) Extrachromosomal homologous recombination and gene targeting in plant cells after Agrobacterium mediated transformation. EMBO J., 9, 3077-3084.
5. Vergunst,A.C. and Hooykaas,P.J.J. (1999) Recombination in the plant genome and its application in biotechnology. Crit. Rev. Plant Sci., 18, 1-31.
6. Bundock,P., Den Dulk-Ras,A., Beijersbergen,A. and Hooykaas,P.J.J. (1995) Transkingdom T-DNA transfer from Agrobacterium tumefaciens to Saccharomyces cerevisiae. EMBO J., 14, 3206-3214.
7. Risseeuw,E., Franke-van Dijk,M.E. and Hooykaas,P.J. (1996) Integration of an insertion-type transferred vector from Agrobacterium tumefaciens into the Saccharomyces cerevisiae genome by gap-repair. Mol. Cell. Biol., 16, 5924-5932.
8. Bundock,P. and Hooykaas,P.J.J. (1996) Integration of Agrobacterium tumefaciens T-DNA in the Saccharomyces cerevisiae genome by illegitimate recombination. Proc. Natl Acad. Sci. USA, 93, 15272-15275.
9. Van Attikum,H., Bundock,B. and Hooykaas,P.J.J. (2001) Non-homologous end-joining proteins are required for Agrobacterium T-DNA integration. EMBO J., 20, 6550-6558.
10. Kraus,E., Leung,W.-Y. and Haber,J.E. (2001) Break-induced replication: a review and an example in budding yeast. Proc. Natl Acad. Sci. USA, 98, 8255-8262.
11. Lewis,L.K. and Resnick,M.A. (2000) Tying up loose ends: nonhomologous end-joining in Saccharomyces cerevisiae. Mutat. Res., 451, 71-89.
12. Sung,P., Trujillo,K.M. and Van Komen,S. (2000) Recombination factors of Saccharomyces cerevisiae. Mutat. Res., 451, 257-275.
13. Critchlow,S.E. and Jackson,S.P. (1998) DNA end-joining: from yeast to man. Trends Biochem. Sci., 23, 394-398.
14. Pâques,F. and Haber,J.E. (1999) Multiple pathways of recombination induced by double-strand breaks in Saccharomyces cerevisiae. Microbiol. Mol. Biol. Rev., 63, 349-404.
15. Sikorski,R.S. and Hieter,P. (1989) A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics, 122, 19-27.
16. Moore,J.K. and Haber,J.E. (1996) Cell cycle and genetic requirements of two pathways of nonhomologous end-joining repair of double-strand breaks in Saccharomyces cerevisiae. Mol. Cell. Biol., 16, 2164-2173.
17. Gietz,D., St Jean,A., Woods,R.A. and Schiestl,R.H. (1992) Improved method for high efficiency transformation of intact yeast cells. Nucleic Acids Res., 20, 1425.
18. Schild,D., Calderon,I.L., Contopoulou,C.R. and Mortimer,R.K. (1983) Cloning of yeast recombination repair genes and evidence that several are nonessential genes. In Friedberg,E.C. and Bridges,B.A. (eds), Cellular responses to DNA damage. Alan R. Liss Inc., New York, NY, pp. 417-427.
19. Steensma,H.Y., Holterman,L., Dekker,I., Van Sluis,C.A. and Wenzel,T.J. (1990) Molecular cloning of the gene for the E1 alpha subunit of the pyruvate dehydrogenase complex from Saccharomyces cerevisiae. Eur. J. Biochem., 191, 769-774.
20. Den Dulk-Ras,A. and Hooykaas,P.J.J. (1995) Electroporation of Agrobacterium tumefaciens. Methods Mol. Biol., 55, 63-72.
21. Van Attikum,H., Bundock,P., Den Dulk-Ras,A., Vergunst,A.C. and Hooykaas,P.J.J. (2002) Agrobacterium tumefaciens mediated transformation of Saccharomyces cerevisiae. TTO, 1, T02732.
22. Hood,E.E., Gelvin,S.B., Melchers,L.S. and Hoekema,A. (1993) New Agrobacterium helper plasmids for gene transfer to plants. Transgenic Res., 2, 208-218.
23. Haber,J.E. (1999) Gatekeepers of recombination. Nature, 398, 665-667.
24. Schiestl,R.H., Dominska,M. and Petes,T.D. (1993) Transformation of Saccharomyces cerevisiae with nonhomologous DNA: illegitimate integration of transforming DNA into yeast chromosomes and in vivo ligation to mitochondrial DNA sequences. Mol. Cell. Biol., 13, 2697-2705.
25. De Groot,M.J.A., Bundock,P., Hooykaas,P.J.J. and Beijersbergen,A.G.M. (1998) Agrobacterium-mediated transformation of filamentous fungi. Nat. Biotechnol., 16, 839-842.
26. Ward,E.R. and Barnes,W.M. (1988) VirD2 protein of Agrobacterium tumefaciens very tightly linked to the 5′ end of T-strand DNA. Science, 242, 927-930.
27. Vergunst,A.C., Schrammmeijer,B., Den Dulk-Ras,A., De Vlaam,C.M., Regensburg-Tuink,T.J. and Hooykaas,P.J.J. (2000) VirB/D4-dependent protein translocation from Agrobacterium into plant cells. Science, 290, 979-982.
28. Christie,P.J., Ward,J.E., Winans,J.C. and Nester,E.W. (1988) The Agrobacterium tumefaciens virE2 gene product is a single-stranded DNA binding protein that associates with T-DNA. J. Bacteriol., 170, 2584-2591.
29. Rossi,L., Hohn,B. and Tinland,B. (1996) Integration of complete transferred DNA units is dependent on the activity of virulence E2 protein of Agrobacterium tumefaciens. Proc. Natl Acad. Sci. USA, 93, 126-130.
30. Schiestl,R.H., Zhu,J. and Petes,T.D. (1994) Effect of mutations in genes affecting homologous recombination on restriction enzyme-mediated and illegitimate recombination in Saccharomyces cerevisiae. Mol. Cell. Biol., 14, 4493-4500.
31. Orr-Weaver,T.L., Szostak,J.W. and Rothstein,R.J. (1981) Yeast transformation: a model system for the study of recombination. Proc. Natl Acad. Sci. USA, 78, 6354-6358.
32. Simon,J.R. and Moore,P.D. (1990) Transformation and recombination in rad mutants of Saccharomyces cerevisiae. Mol. Gen. Genet., 223, 241-248.
33. Malone,R.E., Montelone,B.A., Edwards,C., Carney,K. and Hoekstra,M.F. (1988) A reexamination of the role of the RAD52 gene in spontaneous mitotic recombination. Curr. Genet., 14, 211-223.
34. Schiestl,R.H. and Prakash,S. (1990) RAD10, an excision repair gene of Saccharomyces cerevisiae, is involved in the RAD1 pathway of mitotic recombination. Mol. Cell. Biol., 10, 2485-2491.
35. Gherbi,H., Gallego,M.E., Jalut,N., Lucht,J.M., Hohn,B. and White,C.I. (2001) Homologous recombination in planta is stimulated in the absence of Rad50. EMBO Rep., 2, 287-291.