Isolation and molecular identification of planctomycete bacteria from postlarvae of the giant tiger prawn, Penaeus monodon

Applied and Environmental Microbiology

Volumn 63, Issue 1, 1997, Pages 254-262

  Fuerst, John A ^a   Gwilliam, Heather G ^b   Lindsay, Margaret ^a   Lichanska, Agnieszka ^a   Belcher, Craig ^a   Vickers, Joan E ^c   Hugenholtz, Philip ^d  

^a UNIVERSITY OF QUEENSLAND   (Australia)

^b QUEENSLAND UNIVERSITY OF TECHNOLOGY   (Australia)

^c CSIRO   (Australia)

^d UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S;

ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIUM; BACULOVIRUS; CRUSTACEA; NONHUMAN; PHYLOGENY;

EID: 0031027071     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/aem.63.1.254-262.1997     Document Type: Article

References (50)

1. Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
2. Bauld, J., and J. T. Staley. 1976. Planctomyces maris sp. nov.: a marine isolate of the Planctomyces-Blastocaulis group of budding bacteria. J. Gen. Microbiol. 97:45-55.
3. Bomar, D., S. Giovannoni, and E. Stackebrandt. 1988. A unique type of eubacterial 5S rRNA in members of the order Planctomycetales. J. Mol. Evol. 27:121-125.
4. Brandin, E. R., and T. G. Pistole. 1985. Presence of microorganisms in hemolymph of the horseshoe crab Limulus polyphemus. Appl. Environ. Microbiol. 49:718-720.
5. Brosius, J., M. L. Palmer, J. P. Kennedy, and H. F. Noller. 1978. Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc. Natl. Acad. Sci. USA 75:4801-4805.
6. Cabot, E. 1990. ESEE, the eyeball sequence editor, version 1.04. Eric Cabot, Department of Biology, University of Rochester, Rochester, N.Y.
7. DeLong, E. F. 1992. Archaea in coastal marine environments. Proc. Natl. Acad. Sci. USA 89:5685-5689.
8. De Long, E. F., D. G. Franks, and A. I. Alldredge. 1993. Phylogenetic diversity of aggregate-attached vs. free-living marine bacterial assemblages. Limnol. Oceanogr. 38:924-934.
9. DeLong, E. F., K. Y. Wu, B. B. Prézelin, and R. V. M. Jovine. 1994. High abundance of Archaea in Antarctic marine picoplankton. Nature 371:695-697.
10. Dempsey, A. C., and C. L. Kitting. 1987. Characteristics of bacteria isolated from penaeid shrimp. Crustaceana 52:90-94.
11. Fegan, D. F., T. W. Flegel, S. Sriurairatana, and M. Waiyakruttha. 1991. The occurrence, development and histopathology of monodon baculovirus in Penaeus monodon in southern Thailand. Aquaculture 96:205-217.
12. Felsenstein, J. 1993. PHYLIP - Phylogeny Inference Package (version 3.5c). J. Felsenstein, Department of Genetics, University of Washington, Seattle.
13. Fuerst, J. A. 1995. The planctomycetes: emerging models for microbial ecology, evolution and cell biology. Microbiology 141:1493-1506.
14. Fuerst, J. A., S. K. Sambhi, J. L. Paynter, J. A. Hawkins, and J. G. Atherton. 1991. Isolation of a bacterium resembling Pirellula species from primary tissue culture of the giant tiger prawn (Penaeus monodon). Appl. Environ. Microbiol. 57:3127-3134.
15. Fuhrman, J. A., K. McCallum, and A. A. Davis. 1992. Novel major archaebacterial group from marine plankton. Nature 356:148-150.
16. Giovannoni, S. J., E. F. DeLong, G. J. Olsen, and N. R. Pace. 1988. Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells. J. Bacteriol. 170:720-726.
17. Harris, J. M. 1993. Widespread occurrence of extensive epimural rod bacteria in the hindguts of marine Thalassinidae and Brachyura (Crustacea: Decapoda). Mar. Biol. 116:615-629.
18. Hugenholtz, P., E. Stackebrandt, and J. A. Fuerst. 1994. A phylogenetic analysis of the genus Blastobacter with a view to its future reclassification. Syst. Appl. Microbiol. 17:51-57.
19. König, H., H. Schlesner, and P. Hirsch. 1984. Cell wall studies on budding bacteria of the Planctomyces/Pasteuria group and on a Prosthecomicrobium sp. Arch. Microbiol. 138:200-205.
20. Lane, D. J. 1991. 16S/23S rRNA sequencing, p. 115-175. In E. Stackebrandt and M. Goodfellow (ed.), Nucleic acid techniques in bacterial systematics. John Wiley & Sons, Chichester, United Kingdom.
21. Liesack, W., H. König, H. Schlesner, and P. Hirsch. 1986. Chemical composition of the peptidoglycan-free cell envelopes of budding bacteria of the Pirella/Planctomyces group. Arch. Microbiol. 145:361-366.
22. Liesack, W., R. Söller, T. Stewart, H. Haas, S. Giovannoni, and E. Stackebrandt. 1992. The influence of tachytelically (rapidly) evolving sequences on the topology of phylogenetic trees - intrafamily relationships and the phylogenetic position of Planctomycetaceae as revealed by comparative analysis of 16S ribosomal RNA sequences. Syst. Appl. Microbiol. 15:357-362.
23. Liesack, W., and E. Stackebrandt. 1992. Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment. J. Bacteriol. 174:5072-5078.
24. Maidak, B. L., N. Larsen, M. J. McCaughey, R. Overbeek, G. J. Olsen, K. Fogel, J. Blandy, and C. R. Woese. 1994. The rihosomal database project. Nucleic Acids Res. 22:3485-3487.
25. Mari, J., J.-R. Binami, B. Paulos, and D. V. Lightner. 1993. Preliminary characterization and partial cloning of the genome of a baculovirus from Penaeus monodon (PmSNPV=MBV). Dis. Aquat. Org. 16:207-215.
26. Motoh, H. 1979. Larvae of decapod Crustacea of the Philippines. III. Larval development of the giant tiger prawn, Penaeus monodon, reared in a laboratory. Bull. Jpn. Soc. Sci. Fish. 45:1201-1216.
27. Nair, G. B., R. K. Bhadra, T. Ramamurthy, A. Ramesh, and S. C. Pal. 1991. Vibrio cholerae and other vibrios associated with paddy field cultured prawns. Food Microbiol. 8:203-208.
28. Neefs, J.-M., Y. Van De Peer, P. De Rijk, S. Chapelle, and R. De Wachter. 1993. Compilation of small ribosomal subunit RNA structures. Nucleic Acids Res. 21:3025-3049.
29. Reynolds, J. (ed.). 1993. The extrapharmacopoeia, 30th ed., p. 514. The Pharmacurical Press, London, United Kingdom.
30. Saitou, N., and M. Nei. 1987. The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
31. Schlesner, H. 1986. Pirella marina sp. nov., a budding, peptidoglycan-less bacterium from brackish water. Syst. Appl. Microbiol. 8:177-180.
32. Schlesner, H. 1989. Planctomyces brasiliensis sp. nov., halotolerant bacterium from a salt pit. Syst. Appl. Microbiol. 12:159-161.
33. Schlesner, H. 1994. The development of media suitable for the microorganisms morphologically resembling Planctomyces spp., Pirellula spp., and other Planctomycetales from various aquatic habitats using dilute media. Syst. Appl. Microbiol. 17:135-145.
34. Schlesner, H., and P. Hirsch. 1984. Assignment of ATCC 27377 to Pirella gen. nov. as Pirella staleyi comb. nov. Int. J. Syst. Bacteriol. 34:492-495.
35. Sochard, M. R., D. F. Wilson, B. Austin, and R. R. Colwell. 1979. Bacteria associated with the surface and gut of marine copepods. Appl. Environ. Microbiol. 37:750-759.
36. Stackebrandt, E., A. Fischer, P. Hirsch, T. Roggentin, and H. Schlesner. 1986. The phylogeny of an ancient group of budding peptidoglycan-less eubacteria: the genera Planctomyces and Pirella. Endocytobiosis Cell Res. 3:29-40.
37. Stackebrandt, E., and B. Goebel. 1994. Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44:846-849.
38. Stackebrandt, E., U. Wehmeyer, and W. Liesack. 1986. 16S ribosomal RNA and cell wall analysis of Gemmata obscuriglobus, a new member of the order Planctomycetales. FEMS Microbiol. Lett. 37:289-292.
39. Staley, J. T., J. A. Fuerst, S. Giovannoni, and H. Schlesner. 1992. The order Planctomycetales and the genera Planctomyces, Pirellula, Gemmata and Isosphaera, p. 3710-3731. In A. Balows, H. G. Trüper, M. Dworkin, W. Harder, and K.-H. Schleifer (ed.), The prokaryotes: a handbook on the biology of bacteria: ecophysiology, isolation, identification, applications, 2nd ed., vol. IV. Springer-Verlag, New York, N.Y.
40. Sugita, H., T. Takahashi, F. I. Kamemoto, and Y. Deguchi. 1987. Aerobic bacterial flora in the digestive tracts of freshwater shrimp Palaemon paucidens acclimated with seawater. Nippon Suisan Gakkaishi 53:511.
41. Sugita, H., R. Ueda, L. R. Berger, and Y. Deguchi. 1987. Microflora in the gut of Japanese coastal crustacea. Nippon Suisan Gakkaishi 53:1647-1655.
42. Swofford, D. L. 1993. PAUP: Phylogenetic Analysis Using Parsimony (version 3.1.1). Illinois Natural History Survey, Champaign.
43. Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
44. Tubiash, H. S., R. K. Sizemore, and R. R. Colwell. 1975. Bacterial flora of the hemolymph of the blue crab, Callinectes sapidus: most probable numbers. Appl. Microbiol. 29:388-392.
45. Vickers, J. E., J. L. Paynter, and R. J. G. Lester. 1993. An impression smear method for rapid detection of Penaeus monodon-type baculovirus (MBV) in Australian prawns. J. Fish Dis. 16:507-511.
46. Vickers, J. E., P. B. Spradbrow, R. J. C. Lester, and J. M. Pemberton. 1992. Detection of Penaeus monodon-type baculovirus (MBV) in digestive glands of postlarval prawns using polymerase chain reaction, p. 127-133. In M. Shariffe, R. P. Subasinge, and V. R. Arthur (ed.), Diseases in Asian aquaculture. Fish Health Section, Asian Fisheries Society, Manila, The Philippines.
47. Ward, N., F. A. Rainey, E. Stackebrandt, and H. Schlesner. 1995. Unraveling the extent of diversity within the order Planctomycetales. Appl. Environ. Microbiol. 61:2270-2275.
48. Woese, C. R. 1987. Bacterial evolution. Microbiol. Rev. 51:221-271.
49. Yasuda, K., and T. Kitao. 1980. Bacterial flora in the digestive tract of prawn, Penaeus japonicus Bate. Aquaculture 19:229-234.
50. Zharkikh, A., and W. H. Li. 1992. Statistical properties of bootstrap estimation of phylogenetic variability from nucleotide sequences. I. Four taxa with a molecular clock. Mol. Biol. Evol. 9:1119-1147.