-
1
-
-
0021013526
-
The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme
-
Guerrier-Takada C., Gardiner K., Marsh T., Pace N., and Altman S. The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme. Cell 35 (1983) 849-857
-
(1983)
Cell
, vol.35
, pp. 849-857
-
-
Guerrier-Takada, C.1
Gardiner, K.2
Marsh, T.3
Pace, N.4
Altman, S.5
-
2
-
-
36849148382
-
The RNA world
-
Gilbert W. The RNA world. Nature 319 (1986) 618
-
(1986)
Nature
, vol.319
, pp. 618
-
-
Gilbert, W.1
-
3
-
-
0141450351
-
The enigma of ribonuclease P evolution
-
Hartmann E., and Hartmann R.K. The enigma of ribonuclease P evolution. Trends Genet 19 (2003) 561-569
-
(2003)
Trends Genet
, vol.19
, pp. 561-569
-
-
Hartmann, E.1
Hartmann, R.K.2
-
4
-
-
0033779905
-
Ribonuclease P:a ribonucleoprotein enzyme
-
Kurz J.C., and Fierke C.A. Ribonuclease P:a ribonucleoprotein enzyme. Curr Opin Chem Biol 4 (2000) 553-558
-
(2000)
Curr Opin Chem Biol
, vol.4
, pp. 553-558
-
-
Kurz, J.C.1
Fierke, C.A.2
-
5
-
-
0036441045
-
Analysis of substrate recognition by the ribonucleoprotein endonuclease RNase P
-
Christian E.L., Zahler N.H., Kaye N.M., and Harris M.E. Analysis of substrate recognition by the ribonucleoprotein endonuclease RNase P. Methods 28 (2002) 307-322
-
(2002)
Methods
, vol.28
, pp. 307-322
-
-
Christian, E.L.1
Zahler, N.H.2
Kaye, N.M.3
Harris, M.E.4
-
6
-
-
0003120548
-
Ribonuclease P
-
Gesteland R.F., Cech T.R., and Atkins J.F. (Eds), Cold Spring Harbor Laboratory Press
-
Altman S., and Kirsebom L.A. Ribonuclease P. In: Gesteland R.F., Cech T.R., and Atkins J.F. (Eds). The RNA World. edn 2 (1999), Cold Spring Harbor Laboratory Press 351-380
-
(1999)
The RNA World. edn 2
, pp. 351-380
-
-
Altman, S.1
Kirsebom, L.A.2
-
8
-
-
0038170017
-
Recent insights into the structure and function of the ribonucleoprotein enzyme ribonuclease P
-
Harris M.E., and Christian E.L. Recent insights into the structure and function of the ribonucleoprotein enzyme ribonuclease P. Curr Opin Struct Biol 13 (2003) 325-333
-
(2003)
Curr Opin Struct Biol
, vol.13
, pp. 325-333
-
-
Harris, M.E.1
Christian, E.L.2
-
9
-
-
0037434709
-
Crystal structure of the specificity domain of ribonuclease P
-
The authors reveal the first structure of a large portion of any RNase P. The structure of a B-type S-domain revealed the presence of a large opening lined by nucleotides known to be involved in substrate recognition. Additionally, the structure showed the conformation of a large, well-formed and conserved structural region devoid of any Watson-Crick (WC) base pairing, which corresponds to one of the universally conserved structural modules.
-
Krasilnikov A.S., Yang X., Pan T., and Mondragón A. Crystal structure of the specificity domain of ribonuclease P. Nature 421 (2003) 760-764. The authors reveal the first structure of a large portion of any RNase P. The structure of a B-type S-domain revealed the presence of a large opening lined by nucleotides known to be involved in substrate recognition. Additionally, the structure showed the conformation of a large, well-formed and conserved structural region devoid of any Watson-Crick (WC) base pairing, which corresponds to one of the universally conserved structural modules.
-
(2003)
Nature
, vol.421
, pp. 760-764
-
-
Krasilnikov, A.S.1
Yang, X.2
Pan, T.3
Mondragón, A.4
-
10
-
-
6044275739
-
Basis for structural diversity in homologous RNAs
-
The structure of an A-type S-domain confirmed the presence of the opening involved in tRNA recognition. More importantly, it showed, for the first time, the way that two different RNAs with identical functions can create the same core structure in the context of a different structural scaffold.
-
Krasilnikov A.S., Xiao Y., Pan T., and Mondragon A. Basis for structural diversity in homologous RNAs. Science 306 (2004) 104-107. The structure of an A-type S-domain confirmed the presence of the opening involved in tRNA recognition. More importantly, it showed, for the first time, the way that two different RNAs with identical functions can create the same core structure in the context of a different structural scaffold.
-
(2004)
Science
, vol.306
, pp. 104-107
-
-
Krasilnikov, A.S.1
Xiao, Y.2
Pan, T.3
Mondragon, A.4
-
11
-
-
25644433566
-
Crystal structure of the RNA component of bacterial ribonuclease P
-
The first structure of an intact RNA component from RNase P. The structure of the bacterial A-type RNA component from T. maritima RNase P revealed the general architecture of the molecule, and the fold and location of the universally conserved modules. It also suggested the putative interaction of the tRNA substrate with the S-and C-domains
-
Torres-Larios A., Swinger K.K., Krasilnikov A.S., Pan T., and Mondragon A. Crystal structure of the RNA component of bacterial ribonuclease P. Nature 437 (2005) 584-587. The first structure of an intact RNA component from RNase P. The structure of the bacterial A-type RNA component from T. maritima RNase P revealed the general architecture of the molecule, and the fold and location of the universally conserved modules. It also suggested the putative interaction of the tRNA substrate with the S-and C-domains
-
(2005)
Nature
, vol.437
, pp. 584-587
-
-
Torres-Larios, A.1
Swinger, K.K.2
Krasilnikov, A.S.3
Pan, T.4
Mondragon, A.5
-
12
-
-
26444490660
-
Crystal structure of a bacterial ribonuclease P RNA
-
••], it provides a wealth of information to understand mutational studies, validate previous structural models and analyze the structural convergence of all RNase Ps. The structure also provided a detailed description of the junction loops that form the universally conserved module of the C-domain of RNase P
-
••], it provides a wealth of information to understand mutational studies, validate previous structural models and analyze the structural convergence of all RNase Ps. The structure also provided a detailed description of the junction loops that form the universally conserved module of the C-domain of RNase P
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 13392-13397
-
-
Kazantsev, A.V.1
Krivenko, A.A.2
Harrington, D.J.3
Holbrook, S.R.4
Adams, P.D.5
Pace, N.R.6
-
13
-
-
0025297761
-
Interaction of RNase P from Escherichia coli with pseudoknotted structures in viral RNAs
-
Mans R.M., Guerrier-Takada C., Altman S., and Pleij C.W. Interaction of RNase P from Escherichia coli with pseudoknotted structures in viral RNAs. Nucleic Acids Res 18 (1990) 3479-3487
-
(1990)
Nucleic Acids Res
, vol.18
, pp. 3479-3487
-
-
Mans, R.M.1
Guerrier-Takada, C.2
Altman, S.3
Pleij, C.W.4
-
14
-
-
0029074106
-
Precursor of C4 antisense RNA of bacteriophages P1 and P7 is a substrate for RNase P of Escherichia coli
-
Hartmann R.K., Heinrich J., Schlegl J., and Schuster H. Precursor of C4 antisense RNA of bacteriophages P1 and P7 is a substrate for RNase P of Escherichia coli. Proc Natl Acad Sci USA 92 (1995) 5822-5826
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 5822-5826
-
-
Hartmann, R.K.1
Heinrich, J.2
Schlegl, J.3
Schuster, H.4
-
15
-
-
0025826411
-
Kinetics of the processing of the precursor to 4.5 S RNA, a naturally occurring substrate for RNase P from Escherichia coli
-
Peck-Miller K.A., and Altman S. Kinetics of the processing of the precursor to 4.5 S RNA, a naturally occurring substrate for RNase P from Escherichia coli. J Mol Biol 221 (1991) 1-5
-
(1991)
J Mol Biol
, vol.221
, pp. 1-5
-
-
Peck-Miller, K.A.1
Altman, S.2
-
16
-
-
0028124122
-
A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli
-
Komine Y., Kitabatake M., Yokogawa T., Nishikawa K., and Inokuchi H. A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli. Proc Natl Acad Sci USA 91 (1994) 9223-9227
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 9223-9227
-
-
Komine, Y.1
Kitabatake, M.2
Yokogawa, T.3
Nishikawa, K.4
Inokuchi, H.5
-
17
-
-
0345255620
-
A specific endoribonuclease, RNase P, affects gene expression of polycistronic operon mRNAs
-
Li Y., and Altman S. A specific endoribonuclease, RNase P, affects gene expression of polycistronic operon mRNAs. Proc Natl Acad Sci USA 100 (2003) 13213-13218
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 13213-13218
-
-
Li, Y.1
Altman, S.2
-
18
-
-
0028568179
-
Ribonuclease E provides substrates for ribonuclease P-dependent processing of a polycistronic mRNA
-
Alifano P., Rivellini F., Piscitelli C., Arraiano C.M., Bruni C.B., and Carlomagno M.S. Ribonuclease E provides substrates for ribonuclease P-dependent processing of a polycistronic mRNA. Genes Dev 8 (1994) 3021-3031
-
(1994)
Genes Dev
, vol.8
, pp. 3021-3031
-
-
Alifano, P.1
Rivellini, F.2
Piscitelli, C.3
Arraiano, C.M.4
Bruni, C.B.5
Carlomagno, M.S.6
-
21
-
-
0027973546
-
Base pairing between Escherichia coli RNase P RNA and its substrate
-
Kirsebom L.A., and Svard S.G. Base pairing between Escherichia coli RNase P RNA and its substrate. EMBO J 13 (1994) 4870-4876
-
(1994)
EMBO J
, vol.13
, pp. 4870-4876
-
-
Kirsebom, L.A.1
Svard, S.G.2
-
22
-
-
0036566051
-
Evidence for a polynuclear metal ion binding site in the catalytic domain of ribonuclease P RNA
-
Christian E.L., Kaye N.M., and Harris M.E. Evidence for a polynuclear metal ion binding site in the catalytic domain of ribonuclease P RNA. EMBO J 21 (2002) 2253-2262
-
(2002)
EMBO J
, vol.21
, pp. 2253-2262
-
-
Christian, E.L.1
Kaye, N.M.2
Harris, M.E.3
-
23
-
-
0029795042
-
Magnesium ions are required by Bacillus subtilis ribonuclease P RNA for both binding and cleaving precursor tRNAAsp
-
Beebe J.A., Kurz J.C., and Fierke C.A. Magnesium ions are required by Bacillus subtilis ribonuclease P RNA for both binding and cleaving precursor tRNAAsp. Biochemistry 35 (1996) 10493-10505
-
(1996)
Biochemistry
, vol.35
, pp. 10493-10505
-
-
Beebe, J.A.1
Kurz, J.C.2
Fierke, C.A.3
-
24
-
-
0027223564
-
Pathway of activation by magnesium ions of substrates for the catalytic subunit of RNase P from Escherichia coli
-
Perreault J.P., and Altman S. Pathway of activation by magnesium ions of substrates for the catalytic subunit of RNase P from Escherichia coli. J Mol Biol 230 (1993) 750-756
-
(1993)
J Mol Biol
, vol.230
, pp. 750-756
-
-
Perreault, J.P.1
Altman, S.2
-
25
-
-
0027256149
-
Multiple magnesium ions in the ribonuclease P reaction mechanism
-
Smith D., and Pace N.R. Multiple magnesium ions in the ribonuclease P reaction mechanism. Biochemistry 32 (1993) 5273-5281
-
(1993)
Biochemistry
, vol.32
, pp. 5273-5281
-
-
Smith, D.1
Pace, N.R.2
-
26
-
-
0031156668
-
Identification of the universally conserved core of ribonuclease P RNA
-
Chen J.-L., and Pace N.R. Identification of the universally conserved core of ribonuclease P RNA. RNA 3 (1997) 557-560
-
(1997)
RNA
, vol.3
, pp. 557-560
-
-
Chen, J.-L.1
Pace, N.R.2
-
27
-
-
0025183518
-
Similar cage-shaped structures for the RNA components of all ribonuclease P and ribonuclease MRP enzymes
-
Forster A.C., and Altman S. Similar cage-shaped structures for the RNA components of all ribonuclease P and ribonuclease MRP enzymes. Cell 62 (1990) 407-409
-
(1990)
Cell
, vol.62
, pp. 407-409
-
-
Forster, A.C.1
Altman, S.2
-
28
-
-
0032546728
-
Derivation of the three-dimensional architecture of bacterial ribonuclease P RNAs from comparative sequence analysis
-
Massire C., Jaeger L., and Westhof E. Derivation of the three-dimensional architecture of bacterial ribonuclease P RNAs from comparative sequence analysis. J Mol Biol 279 (1998) 773-793
-
(1998)
J Mol Biol
, vol.279
, pp. 773-793
-
-
Massire, C.1
Jaeger, L.2
Westhof, E.3
-
29
-
-
0027990605
-
Use of photoaffinity crosslinking and molecular modeling to analyze the global architecture of ribonuclease P RNA
-
Harris M.E., Nolan J.M., Malhotra A., Brown J.W., Harvey S.C., and Pace N.R. Use of photoaffinity crosslinking and molecular modeling to analyze the global architecture of ribonuclease P RNA. EMBO J 13 (1994) 3953-3963
-
(1994)
EMBO J
, vol.13
, pp. 3953-3963
-
-
Harris, M.E.1
Nolan, J.M.2
Malhotra, A.3
Brown, J.W.4
Harvey, S.C.5
Pace, N.R.6
-
30
-
-
0029949699
-
Domain structure of the ribozyme from eubacterial ribonuclease P
-
Loria A., and Pan T. Domain structure of the ribozyme from eubacterial ribonuclease P. RNA 2 (1996) 551-563
-
(1996)
RNA
, vol.2
, pp. 551-563
-
-
Loria, A.1
Pan, T.2
-
31
-
-
0028945859
-
Higher order folding and domain analysis of the ribozyme from Bacillus subtilis ribonuclease P
-
Pan T. Higher order folding and domain analysis of the ribozyme from Bacillus subtilis ribonuclease P. Biochemistry 34 (1995) 902-909
-
(1995)
Biochemistry
, vol.34
, pp. 902-909
-
-
Pan, T.1
-
32
-
-
0027173193
-
An independently folding domain of RNA tertiary structure within the Tetrahymena ribozyme
-
Murphy F.L., and Cech T.R. An independently folding domain of RNA tertiary structure within the Tetrahymena ribozyme. Biochemistry 32 (1993) 5291-5300
-
(1993)
Biochemistry
, vol.32
, pp. 5291-5300
-
-
Murphy, F.L.1
Cech, T.R.2
-
33
-
-
11444263264
-
Crystal structure of a phage Twort group I ribozyme-product complex
-
Golden B.L., Kim H., and Chase E. Crystal structure of a phage Twort group I ribozyme-product complex. Nat Struct Mol Biol 12 (2005) 82-89
-
(2005)
Nat Struct Mol Biol
, vol.12
, pp. 82-89
-
-
Golden, B.L.1
Kim, H.2
Chase, E.3
-
34
-
-
8644229237
-
Structure of the Tetrahymena ribozyme: base triple sandwich and metal ion at the active site
-
Guo F., Gooding A.R., and Cech T.R. Structure of the Tetrahymena ribozyme: base triple sandwich and metal ion at the active site. Mol Cell 16 (2004) 351-362
-
(2004)
Mol Cell
, vol.16
, pp. 351-362
-
-
Guo, F.1
Gooding, A.R.2
Cech, T.R.3
-
35
-
-
3042848954
-
Crystal structure of a self-splicing group I intron with both exons
-
Adams P.L., Stahley M.R., Kosek A.B., Wang J., and Strobel S.A. Crystal structure of a self-splicing group I intron with both exons. Nature 430 (2004) 45-50
-
(2004)
Nature
, vol.430
, pp. 45-50
-
-
Adams, P.L.1
Stahley, M.R.2
Kosek, A.B.3
Wang, J.4
Strobel, S.A.5
-
36
-
-
20444496805
-
Structure and assembly of group I introns
-
This review of the structure and assembly of group I introns discusses, among other things, the idea of a similar structural core supported by different scaffolds
-
Woodson S.A. Structure and assembly of group I introns. Curr Opin Struct Biol 15 (2005) 324-330. This review of the structure and assembly of group I introns discusses, among other things, the idea of a similar structural core supported by different scaffolds
-
(2005)
Curr Opin Struct Biol
, vol.15
, pp. 324-330
-
-
Woodson, S.A.1
-
37
-
-
30944458838
-
Atomic level architecture of group I introns revealed
-
Group I introns represent another extended family of ribozymes. The crystal structures of three introns [33-35] representing different steps of the reaction have been solved. Comparison of the structures revealed a conserved catalytic core that is supported by different peripheral elements, just as in the case of RNase P
-
Vicens Q., and Cech T.R. Atomic level architecture of group I introns revealed. Trends Biochem Sci 31 (2006) 41-51. Group I introns represent another extended family of ribozymes. The crystal structures of three introns [33-35] representing different steps of the reaction have been solved. Comparison of the structures revealed a conserved catalytic core that is supported by different peripheral elements, just as in the case of RNase P
-
(2006)
Trends Biochem Sci
, vol.31
, pp. 41-51
-
-
Vicens, Q.1
Cech, T.R.2
-
38
-
-
0029935208
-
Comparative analysis of ribonuclease P RNA using gene sequences from natural microbial populations reveals tertiary structural elements
-
Brown J.W., Nolan J.M., Haas E.S., Rubio M.A., Major F., and Pace N.R. Comparative analysis of ribonuclease P RNA using gene sequences from natural microbial populations reveals tertiary structural elements. Proc Natl Acad Sci USA 93 (1996) 3001-3006
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 3001-3006
-
-
Brown, J.W.1
Nolan, J.M.2
Haas, E.S.3
Rubio, M.A.4
Major, F.5
Pace, N.R.6
-
39
-
-
0031158312
-
Phylogenetic evidence for a new tertiary interaction in bacterial RNase P RNAs
-
Massire C., Jaeger L., and Westhof E. Phylogenetic evidence for a new tertiary interaction in bacterial RNase P RNAs. RNA 3 (1997) 553-556
-
(1997)
RNA
, vol.3
, pp. 553-556
-
-
Massire, C.1
Jaeger, L.2
Westhof, E.3
-
40
-
-
0032546728
-
Derivation of the three-dimensional architecture of bacterial ribonuclease P RNAs from comparative sequence analysis
-
Massire C., Jaeger L., and Westhof E. Derivation of the three-dimensional architecture of bacterial ribonuclease P RNAs from comparative sequence analysis. J Mol Biol 279 (1998) 773-793
-
(1998)
J Mol Biol
, vol.279
, pp. 773-793
-
-
Massire, C.1
Jaeger, L.2
Westhof, E.3
-
41
-
-
0026315522
-
Long-range structure in ribonuclease P RNA
-
Haas E.S., Morse D.P., Brown J.W., Schmidt F.J., and Pace N.R. Long-range structure in ribonuclease P RNA. Science 254 (1991) 853-856
-
(1991)
Science
, vol.254
, pp. 853-856
-
-
Haas, E.S.1
Morse, D.P.2
Brown, J.W.3
Schmidt, F.J.4
Pace, N.R.5
-
42
-
-
0029803926
-
Structure and evolution of ribonuclease P RNA in Gram-positive bacteria
-
Haas E.S., Banta A.B., Harris J.K., Pace N.R., and Brown J.W. Structure and evolution of ribonuclease P RNA in Gram-positive bacteria. Nucleic Acids Res 24 (1996) 4775-4782
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 4775-4782
-
-
Haas, E.S.1
Banta, A.B.2
Harris, J.K.3
Pace, N.R.4
Brown, J.W.5
-
43
-
-
0037195276
-
Dimeric and monomeric Bacillus subtilis RNase P holoenzyme in the absence and presence of pre-tRNA substrates
-
Barrera A., Fang X., Jacob J., Casey E., Thiyagarajan P., and Pan T. Dimeric and monomeric Bacillus subtilis RNase P holoenzyme in the absence and presence of pre-tRNA substrates. Biochemistry 41 (2002) 12986-12994
-
(2002)
Biochemistry
, vol.41
, pp. 12986-12994
-
-
Barrera, A.1
Fang, X.2
Jacob, J.3
Casey, E.4
Thiyagarajan, P.5
Pan, T.6
-
44
-
-
27144527101
-
Protein activation of a ribozyme: the role of bacterial RNase P protein
-
Buck A.H., Dalby A.B., Poole A.W., Kazantsev A.V., and Pace N.R. Protein activation of a ribozyme: the role of bacterial RNase P protein. EMBO J 24 (2005) 3360-3368
-
(2005)
EMBO J
, vol.24
, pp. 3360-3368
-
-
Buck, A.H.1
Dalby, A.B.2
Poole, A.W.3
Kazantsev, A.V.4
Pace, N.R.5
-
45
-
-
0038475947
-
On the occurrence of the T-loop RNA folding motif in large RNA molecules
-
Krasilnikov A.S., and Mondragon A. On the occurrence of the T-loop RNA folding motif in large RNA molecules. RNA 9 (2003) 640-643
-
(2003)
RNA
, vol.9
, pp. 640-643
-
-
Krasilnikov, A.S.1
Mondragon, A.2
-
46
-
-
0344012516
-
RNA structure comparison, motif search and discovery using a reduced representation of RNA conformational space
-
Duarte C.M., Wadley L.M., and Pyle A.M. RNA structure comparison, motif search and discovery using a reduced representation of RNA conformational space. Nucleic Acids Res 31 (2003) 4755-4761
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 4755-4761
-
-
Duarte, C.M.1
Wadley, L.M.2
Pyle, A.M.3
-
48
-
-
0030011805
-
Mutational analysis of the joining regions flanking helix P18 in E. coli RNase P RNA
-
Hardt W.D., and Hartmann R.K. Mutational analysis of the joining regions flanking helix P18 in E. coli RNase P RNA. J Mol Biol 259 (1996) 422-433
-
(1996)
J Mol Biol
, vol.259
, pp. 422-433
-
-
Hardt, W.D.1
Hartmann, R.K.2
-
49
-
-
0031475158
-
In vitro selection for altered divalent metal specificity in the RNase P RNA
-
Frank D.N., and Pace N.R. In vitro selection for altered divalent metal specificity in the RNase P RNA. Proc Natl Acad Sci USA 94 (1997) 14355-14360
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 14355-14360
-
-
Frank, D.N.1
Pace, N.R.2
-
50
-
-
0032529473
-
Interaction of structural modules in substrate binding by the ribozyme from Bacillus subtilis RNase P
-
Odell L., Huang V., Jakacka M., and Pan T. Interaction of structural modules in substrate binding by the ribozyme from Bacillus subtilis RNase P. Nucleic Acids Res 26 (1998) 3717-3723
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 3717-3723
-
-
Odell, L.1
Huang, V.2
Jakacka, M.3
Pan, T.4
-
51
-
-
0032480795
-
Recognition of a pre-tRNA substrate by the Bacillus subtilis RNase P holoenzyme
-
Loria A., Niranjanakumari S., Fierke C.A., and Pan T. Recognition of a pre-tRNA substrate by the Bacillus subtilis RNase P holoenzyme. Biochemistry 37 (1998) 15466-15473
-
(1998)
Biochemistry
, vol.37
, pp. 15466-15473
-
-
Loria, A.1
Niranjanakumari, S.2
Fierke, C.A.3
Pan, T.4
-
52
-
-
0035010211
-
Geometric nomenclature and classification of RNA base pairs
-
Leontis N.B., and Westhof E. Geometric nomenclature and classification of RNA base pairs. RNA 7 (2001) 499-512
-
(2001)
RNA
, vol.7
, pp. 499-512
-
-
Leontis, N.B.1
Westhof, E.2
|