메뉴 건너뛰기




Volumn 259, Issue 3, 1996, Pages 422-433

Mutational analysis of the joining regions flanking helix P18 in E. coli RNase P RNA

Author keywords

E. coli ribonuclease P RNA; Gel retardation; In vivo complementation studies; Mutational analysis; Pb2+ induced hydrolysis

Indexed keywords

RIBONUCLEASE P; RIBOZYME; RNA BINDING PROTEIN; TRANSFER RNA;

EID: 0030011805     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1996.0329     Document Type: Article
Times cited : (17)

References (40)
  • 2
    • 0024316780 scopus 로고
    • Characterization in vitro of the defect in a temperature-sensitive mutant of the protein subunit of RNase P from Escherichia coli
    • Baer, M. F., Wesolowski, D. & Altman, S. (1989). Characterization in vitro of the defect in a temperature-sensitive mutant of the protein subunit of RNase P from Escherichia coli. J. Bacteriol. 171, 6862-6866.
    • (1989) J. Bacteriol. , vol.171 , pp. 6862-6866
    • Baer, M.F.1    Wesolowski, D.2    Altman, S.3
  • 3
    • 0026606958 scopus 로고
    • Ribonuclease P RNA and protein subunits from bacteria
    • Brown, J. W. & Pace, N. R. (1992). Ribonuclease P RNA and protein subunits from bacteria. Nucl. Acids Res. 20, 1451-1456.
    • (1992) Nucl. Acids Res. , vol.20 , pp. 1451-1456
    • Brown, J.W.1    Pace, N.R.2
  • 4
    • 0025129447 scopus 로고
    • Mapping the active site of ribonuclease P RNA using a substrate containing a photoaffinity agent
    • Burgin, A. B. & Pace, N. R. (1990). Mapping the active site of ribonuclease P RNA using a substrate containing a photoaffinity agent. EMBO J. 9, 4111-4118.
    • (1990) EMBO J. , vol.9 , pp. 4111-4118
    • Burgin, A.B.1    Pace, N.R.2
  • 5
    • 0028569768 scopus 로고
    • Catalytic site components common to both splicing steps of a group II intron
    • Chanfreau, G. & Jacquier, A. (1994). Catalytic site components common to both splicing steps of a group II intron. Science, 266, 1383-1387.
    • (1994) Science , vol.266 , pp. 1383-1387
    • Chanfreau, G.1    Jacquier, A.2
  • 7
    • 0026536701 scopus 로고
    • Contributions of phylogenetically variable structural elements to the function of the ribozyme ribonuclease P
    • Darr, S. C., Zito, K., Smith, D. & Pace, N. R. (1992). Contributions of phylogenetically variable structural elements to the function of the ribozyme ribonuclease P. Biochemistry, 31, 328-333.
    • (1992) Biochemistry , vol.31 , pp. 328-333
    • Darr, S.C.1    Zito, K.2    Smith, D.3    Pace, N.R.4
  • 8
    • 0018120558 scopus 로고
    • 3′-Terminal labelling of RNA with T4 RNA ligase
    • England, T. E. & Uhlenbeck, O. C. (1978). 3′-Terminal labelling of RNA with T4 RNA ligase. Nature, 275, 560-561.
    • (1978) Nature , vol.275 , pp. 560-561
    • England, T.E.1    Uhlenbeck, O.C.2
  • 10
    • 0021013526 scopus 로고
    • The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme
    • Guerrier-Takada, C., Gardiner, K., Marsh, T., Pace, N. & Altman, S. (1983). The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme. Cell, 35, 849-857.
    • (1983) Cell , vol.35 , pp. 849-857
    • Guerrier-Takada, C.1    Gardiner, K.2    Marsh, T.3    Pace, N.4    Altman, S.5
  • 11
    • 0028279011 scopus 로고
    • Further perspective on the catalytic core and secondary structure of ribonuclease P RNA
    • Haas, E. S., Brown, J. W., Pitulle, C. & Pace, N. R. (1994). Further perspective on the catalytic core and secondary structure of ribonuclease P RNA. Proc. Natl Acad. Sci. USA, 91, 2527-2531.
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 2527-2531
    • Haas, E.S.1    Brown, J.W.2    Pitulle, C.3    Pace, N.R.4
  • 13
    • 0029018021 scopus 로고
    • Rp-phosphorothioate modifications in RNase P RNA that interfere with tRNA binding
    • Hardt, W.-D., Warnecke, J. M., Erdmann, V. A. & Hartmann, R. K. (1995a). Rp-phosphorothioate modifications in RNase P RNA that interfere with tRNA binding. EMBO J. 14, 2935-2944.
    • (1995) EMBO J. , vol.14 , pp. 2935-2944
    • Hardt, W.-D.1    Warnecke, J.M.2    Erdmann, V.A.3    Hartmann, R.K.4
  • 14
    • 0028934068 scopus 로고
    • Kinetics and thermodynamics of the RNase P RNA cleavage reaction: Analysis of tRNA 3′-end variants
    • Hardt, W.-D., Schlegl, J., Erdmann, V. A. & Hartmann, R. K. (1995b). Kinetics and thermodynamics of the RNase P RNA cleavage reaction: analysis of tRNA 3′-end variants. J. Mol. Biol. 247, 161-172.
    • (1995) J. Mol. Biol. , vol.247 , pp. 161-172
    • Hardt, W.-D.1    Schlegl, J.2    Erdmann, V.A.3    Hartmann, R.K.4
  • 15
    • 0029286551 scopus 로고
    • Identification of phosphates involved in catalysis by the ribozyme RNase P RNA
    • Harris, M. E. & Pace, N. R. (1995). Identification of phosphates involved in catalysis by the ribozyme RNase P RNA. RNA, 1, 210-218.
    • (1995) RNA , vol.1 , pp. 210-218
    • Harris, M.E.1    Pace, N.R.2
  • 16
    • 0027990605 scopus 로고
    • Use of photoaffinity crosslinking and molecular modeling to analyze the global architecture of ribonuclease P RNA
    • Harris, M. E., Nolan, J. M., Malhotra, A., Brown, J. W., Harvey, S. C. & Pace, N. R. (1994). Use of photoaffinity crosslinking and molecular modeling to analyze the global architecture of ribonuclease P RNA. EMBO J. 13, 3953-3963.
    • (1994) EMBO J. , vol.13 , pp. 3953-3963
    • Harris, M.E.1    Nolan, J.M.2    Malhotra, A.3    Brown, J.W.4    Harvey, S.C.5    Pace, N.R.6
  • 17
    • 0025992237 scopus 로고
    • Site-specific cleavage by metal ion cofactors and inhibitors of M1 RNA, the catalytic subunit of RNase P from Escherichia coli
    • Kazakov, S. & Altman, S. (1991). Site-specific cleavage by metal ion cofactors and inhibitors of M1 RNA, the catalytic subunit of RNase P from Escherichia coli. Proc. Natl Acad. Sci. USA, 88, 9193-9197.
    • (1991) Proc. Natl Acad. Sci. USA , vol.88 , pp. 9193-9197
    • Kazakov, S.1    Altman, S.2
  • 18
    • 0027973546 scopus 로고
    • Base-pairing between Escherichia coli RNase P RNA and its substrate
    • Kirsebom, L. A. & Svärd, S. G. (1994). Base-pairing between Escherichia coli RNase P RNA and its substrate. EMBO J. 13, 4870-4876.
    • (1994) EMBO J. , vol.13 , pp. 4870-4876
    • Kirsebom, L.A.1    Svärd, S.G.2
  • 19
    • 0024206114 scopus 로고
    • Differential effects of mutations in the protein and RNA moieties of RNase P on the efficiency of suppression by various tRNA suppressors
    • Kirsebom, L. A., Baer, M. F. & Altman, S. (1988). Differential effects of mutations in the protein and RNA moieties of RNase P on the efficiency of suppression by various tRNA suppressors. J. Mol. Biol. 204, 879-888.
    • (1988) J. Mol. Biol. , vol.204 , pp. 879-888
    • Kirsebom, L.A.1    Baer, M.F.2    Altman, S.3
  • 20
    • 0028146083 scopus 로고
    • Phylogenetic comparative chemical footprint analysis of the interaction between ribonuclease P RNA and tRNA
    • LaGrandeur, T. E., Hüttenhofer, A., Noller, H. F. & Pace, N. R. (1994). Phylogenetic comparative chemical footprint analysis of the interaction between ribonuclease P RNA and tRNA. EMBO J. 13, 3945-3952.
    • (1994) EMBO J. , vol.13 , pp. 3945-3952
    • LaGrandeur, T.E.1    Hüttenhofer, A.2    Noller, H.F.3    Pace, N.R.4
  • 21
    • 0022550782 scopus 로고
    • Site-directed mutagenesis of M1 RNA, the RNA subunit of Escherichia coli ribonuclease P
    • Lawrence, N. P. & Altman, S. (1986). Site-directed mutagenesis of M1 RNA, the RNA subunit of Escherichia coli ribonuclease P. J. Mol. Biol. 191, 163-175.
    • (1986) J. Mol. Biol. , vol.191 , pp. 163-175
    • Lawrence, N.P.1    Altman, S.2
  • 22
    • 0023794579 scopus 로고
    • Selection and characterization of randomly produced mutants in the gene coding for M1 RNA
    • Lumelsky, N. & Altman, S. (1988). Selection and characterization of randomly produced mutants in the gene coding for M1 RNA. J. Mol. Biol. 202, 443-454.
    • (1988) J. Mol. Biol. , vol.202 , pp. 443-454
    • Lumelsky, N.1    Altman, S.2
  • 23
    • 0014945433 scopus 로고
    • Calcium dependent bacteriophage DNA infection
    • Mandel, M. & Higa, A. (1970). Calcium dependent bacteriophage DNA infection. J. Mol. Biol. 53, 154-162.
    • (1970) J. Mol. Biol. , vol.53 , pp. 154-162
    • Mandel, M.1    Higa, A.2
  • 25
    • 0028070418 scopus 로고
    • Characterization of the Borrelia burgdorferi RNase P RNA gene reveals a novel tertiary interaction
    • Mattsson, J. G., Svärd, S. G. & Kirsebom, L. A. (1994). Characterization of the Borrelia burgdorferi RNase P RNA gene reveals a novel tertiary interaction. J. Mol. Biol. 241, 1-6.
    • (1994) J. Mol. Biol. , vol.241 , pp. 1-6
    • Mattsson, J.G.1    Svärd, S.G.2    Kirsebom, L.A.3
  • 26
    • 0028131972 scopus 로고
    • Interaction of the 3′-end of tRNA with ribonuclease P RNA
    • Oh, B.-K. & Pace, N. R. (1994). Interaction of the 3′-end of tRNA with ribonuclease P RNA. Nucl. Acids Res. 22, 4087-4094.
    • (1994) Nucl. Acids Res. , vol.22 , pp. 4087-4094
    • Oh, B.-K.1    Pace, N.R.2
  • 27
    • 0025155692 scopus 로고
    • Direct measurement of oligonucleotide substrate binding to wild-type and mutant ribozymes from Tetrahymena
    • Pyle, A. M., McSwiggen, J. A. & Cech, T. R. (1990). Direct measurement of oligonucleotide substrate binding to wild-type and mutant ribozymes from Tetrahymena. Proc. Natl Acad. Sci. USA, 87, 8187-8191.
    • (1990) Proc. Natl Acad. Sci. USA , vol.87 , pp. 8187-8191
    • Pyle, A.M.1    McSwiggen, J.A.2    Cech, T.R.3
  • 29
    • 0026613980 scopus 로고
    • Cleavage efficiencies of model substrates for ribonuclease P from Escherichia coli and Thermus thermophilus
    • Schlegl, J., Fürste, J. P., Bald, R., Erdmann, V. A. & Hartmann, R. K. (1992). Cleavage efficiencies of model substrates for ribonuclease P from Escherichia coli and Thermus thermophilus. Nucl. Acids Res. 20, 5963-5970.
    • (1992) Nucl. Acids Res. , vol.20 , pp. 5963-5970
    • Schlegl, J.1    Fürste, J.P.2    Bald, R.3    Erdmann, V.A.4    Hartmann, R.K.5
  • 30
    • 0028116719 scopus 로고
    • Contribution of structural elements to Thermus thermophilus ribonuclease P RNA function
    • Schlegl, J., Hardt, W.-D., Erdmann, V. A. & Hartmann, R. K. (1994). Contribution of structural elements to Thermus thermophilus ribonuclease P RNA function. EMBO J. 13, 4863-4869.
    • (1994) EMBO J. , vol.13 , pp. 4863-4869
    • Schlegl, J.1    Hardt, W.-D.2    Erdmann, V.A.3    Hartmann, R.K.4
  • 31
    • 0023054115 scopus 로고
    • Mutations affecting two distinct functions of the RNA component of RNase P
    • Shiraishi, H. & Shimura, Y. (1986). Mutations affecting two distinct functions of the RNA component of RNase P. EMBO J. 5, 3673-3679.
    • (1986) EMBO J. , vol.5 , pp. 3673-3679
    • Shiraishi, H.1    Shimura, Y.2
  • 32
    • 0026792946 scopus 로고
    • Influence of metal ions on the ribonuclease P reaction
    • Smith, D., Burgin, A., Haas, E. S. & Pace, N. R. (1992). Influence of metal ions on the ribonuclease P reaction. J. Biol. Chem. 267, 2429-2436.
    • (1992) J. Biol. Chem. , vol.267 , pp. 2429-2436
    • Smith, D.1    Burgin, A.2    Haas, E.S.3    Pace, N.R.4
  • 33
    • 0027205003 scopus 로고
    • Determinants of Escherichia coli RNase P cleavage site selection: A detailed in vitro and in vivo analysis
    • Svärd, S. G. & Kirsebom, L. A. (1993). Determinants of Escherichia coli RNase P cleavage site selection: a detailed in vitro and in vivo analysis. Nucl. Acids Res. 21, 427-434.
    • (1993) Nucl. Acids Res. , vol.21 , pp. 427-434
    • Svärd, S.G.1    Kirsebom, L.A.2
  • 34
    • 0028295610 scopus 로고
    • Gel retardation analysis of the interaction between C5 protein and M1 RNA in the formation of the ribonuclease P holoenzyme from Escherichia coli
    • Talbot, S. J. & Altman, S. (1994). Gel retardation analysis of the interaction between C5 protein and M1 RNA in the formation of the ribonuclease P holoenzyme from Escherichia coli. Biochemistry, 33, 1399-1405.
    • (1994) Biochemistry , vol.33 , pp. 1399-1405
    • Talbot, S.J.1    Altman, S.2
  • 35
    • 0027260939 scopus 로고
    • A novel tertiary interaction in M1 RNA, the catalytic subunit of Escherichia coli RNase P
    • Tallsjö, A., Svärd, S. G., Kufel, J. & Kirsebom, L. A. (1993). A novel tertiary interaction in M1 RNA, the catalytic subunit of Escherichia coli RNase P. Nucl. Acids Res. 21, 3927-3933.
    • (1993) Nucl. Acids Res. , vol.21 , pp. 3927-3933
    • Tallsjö, A.1    Svärd, S.G.2    Kufel, J.3    Kirsebom, L.A.4
  • 36
    • 0027295076 scopus 로고
    • Comparative structural analysis of nuclear RNase P RNAs from yeast
    • Tranguch, A. J. & Engelke, D. R. (1993). Comparative structural analysis of nuclear RNase P RNAs from yeast. J. Biol. Chem. 268, 14045-14053.
    • (1993) J. Biol. Chem. , vol.268 , pp. 14045-14053
    • Tranguch, A.J.1    Engelke, D.R.2
  • 37
    • 0023696278 scopus 로고
    • Protein-RNA interactions in the RNase P holoenzyme from Escherichia coli
    • Vioque, A., Arnez, J. & Altman, S. (1988). Protein-RNA interactions in the RNase P holoenzyme from Escherichia coli. J. Mol. Biol. 202, 835-848.
    • (1988) J. Mol. Biol. , vol.202 , pp. 835-848
    • Vioque, A.1    Arnez, J.2    Altman, S.3
  • 38
    • 0025166185 scopus 로고
    • Complementation of an RNase P RNA (rnpB) gene deletion in Escherichia coli by homologous genes from distantly related eubacteria
    • Waugh, D. S. & Pace, N. R. (1990). Complementation of an RNase P RNA (rnpB) gene deletion in Escherichia coli by homologous genes from distantly related eubacteria. J. Bacteriol. 172, 6316-6321.
    • (1990) J. Bacteriol. , vol.172 , pp. 6316-6321
    • Waugh, D.S.1    Pace, N.R.2
  • 39
    • 0028362214 scopus 로고
    • Three-dimensional working model of M1 RNA, the catalytic RNA subunit of ribonuclease P from Escherichia coli
    • Westhof, E. & Altman, S. (1994). Three-dimensional working model of M1 RNA, the catalytic RNA subunit of ribonuclease P from Escherichia coli. Proc. Natl Acad. Sci. USA, 91, 5133-5137.
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 5133-5137
    • Westhof, E.1    Altman, S.2
  • 40
    • 0027729890 scopus 로고
    • Lead-catalyzed cleavage of ribonuclease P RNA as a probe for integrity of tertiary structure
    • Zito, K., Hüttenhofer, A. & Pace, N. R. (1993). Lead-catalyzed cleavage of ribonuclease P RNA as a probe for integrity of tertiary structure. Nucl. Acids Res. 21, 5916-5920.
    • (1993) Nucl. Acids Res. , vol.21 , pp. 5916-5920
    • Zito, K.1    Hüttenhofer, A.2    Pace, N.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.