-
1
-
-
0036849174
-
A century of research on the amoebaflagellate genus Naegleria
-
De Jonckheere JF: A century of research on the amoebaflagellate genus Naegleria. Acta Protozool 2002, 41:309-342.
-
(2002)
Acta Protozool
, vol.41
, pp. 309-342
-
-
De Jonckheere, J.F.1
-
2
-
-
1942476864
-
Molecular definition and the ubiquity of species in the genus Naegleria
-
De Jonckheere JF: Molecular definition and the ubiquity of species in the genus Naegleria. Protist 2004, 155:89-103.
-
(2004)
Protist
, vol.155
, pp. 89-103
-
-
De Jonckheere, J.F.1
-
3
-
-
0023412624
-
rRNA genes of Naegleria gruberi are carried exclusively on a 14-kilobase-pair plasmid
-
Clark CG, Cross GA: rRNA genes of Naegleria gruberi are carried exclusively on a 14-kilobase-pair plasmid. Mol Cell Biol 1987, 7:3027-3031.
-
(1987)
Mol Cell Biol
, vol.7
, pp. 3027-3031
-
-
Clark, C.G.1
Cross, G.A.2
-
4
-
-
0024081675
-
Small-subunit ribosomal RNA sequence from Naegleria gruberi supports the polyphyletic origin of amoebas
-
Clark CG, Cross GA: Small-subunit ribosomal RNA sequence from Naegleria gruberi supports the polyphyletic origin of amoebas. Mol Biol Evol 1988, 5:512-518.
-
(1988)
Mol Biol Evol
, vol.5
, pp. 512-518
-
-
Clark, C.G.1
Cross, G.A.2
-
5
-
-
0011906960
-
Group I introns in nuclear ribosomal DNA of Naegleria
-
Edited by: Billot-Bonef S, Cabanes PA, Marciano-Cabral F, Pernin P, Pringuez E. Paris: John Libby Eurotext
-
Johansen S, Coucheron DH, Haugen P: Group I introns in nuclear ribosomal DNA of Naegleria. In Ninth International meeting on the biology and pathogenicity of free-living amoebae proceedings Edited by: Billot-Bonef S, Cabanes PA, Marciano-Cabral F, Pernin P, Pringuez E. Paris: John Libby Eurotext; 2001:254-260.
-
(2001)
Ninth International Meeting on the Biology and Pathogenicity of Free-living Amoebae Proceedings
, pp. 254-260
-
-
Johansen, S.1
Coucheron, D.H.2
Haugen, P.3
-
6
-
-
0028503668
-
Evidence for the ancestral origin of group I introns in the SSUrDNA of Naegleria spp.
-
De Jonckheere JF: Evidence for the ancestral origin of group I introns in the SSUrDNA of Naegleria spp. J Eukaryot Microbiol 1994, 41:457-463.
-
(1994)
J Eukaryot Microbiol
, vol.41
, pp. 457-463
-
-
De Jonckheere, J.F.1
-
7
-
-
0030760922
-
Naegleria nucleolar introns contain two group I ribozymes with different functions in RNA splicing and processing
-
Einvik C, Decatur WA, Embley TM, Vogt VM, Johansen S: Naegleria nucleolar introns contain two group I ribozymes with different functions in RNA splicing and processing. RNA 1997, 3:710-720.
-
(1997)
RNA
, vol.3
, pp. 710-720
-
-
Einvik, C.1
Decatur, W.A.2
Embley, T.M.3
Vogt, V.M.4
Johansen, S.5
-
8
-
-
0028067613
-
Loss of the ORF in the SSUrDNA group I intron of one Naegleria lineage
-
De Jonckheere JF, Brown S: Loss of the ORF in the SSUrDNA group I intron of one Naegleria lineage. Nucleic Acids Res 1994, 22:3925-3927.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 3925-3927
-
-
De Jonckheere, J.F.1
Brown, S.2
-
9
-
-
0032518218
-
Three different group I introns in the nuclear large subunit ribosomal DNA of the amoeboflagellate Naegleria
-
De Jonckheere JF, Brown S: Three different group I introns in the nuclear large subunit ribosomal DNA of the amoeboflagellate Naegleria. Nucleic Acids Res 1998, 26:456-461.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 456-461
-
-
De Jonckheere, J.F.1
Brown, S.2
-
10
-
-
0035126003
-
A novel ORF-containing group I intron with His-Cys box in the LSU rDNA of Naegleria
-
De Jonckheere JF, Brown S: A novel ORF-containing group I intron with His-Cys box in the LSU rDNA of Naegleria. Acta Protozool 2001, 40:27-31.
-
(2001)
Acta Protozool
, vol.40
, pp. 27-31
-
-
De Jonckheere, J.F.1
Brown, S.2
-
11
-
-
0036231084
-
Characterization of the self-splicing products of two complex Naegleria LSU rDNA group I introns containing homing endonuclease genes
-
Haugen P, De Jonckheere DF, Johansen S: Characterization of the self-splicing products of two complex Naegleria LSU rDNA group I introns containing homing endonuclease genes. Eur J Biochem 2002, 269:641-1649.
-
(2002)
Eur J Biochem
, vol.269
, pp. 641-1649
-
-
Haugen, P.1
De Jonckheere, D.F.2
Johansen, S.3
-
12
-
-
0025367254
-
Self-splicing of group I introns
-
Cech TR: Self-splicing of group I introns. Annu Rev Biochem 1990, 59:543-568.
-
(1990)
Annu Rev Biochem
, vol.59
, pp. 543-568
-
-
Cech, T.R.1
-
14
-
-
0030452773
-
New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: A complete 3D model of the Tetrahymena thermophila ribozyme
-
Lehnert V, Jaeger L, Michel F, Westhof E: New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: a complete 3D model of the Tetrahymena thermophila ribozyme. Chem Biol 1996, 3:993-1009.
-
(1996)
Chem Biol
, vol.3
, pp. 993-1009
-
-
Lehnert, V.1
Jaeger, L.2
Michel, F.3
Westhof, E.4
-
15
-
-
8644229237
-
Structure of the Tetrahymena ribozyme: Base triple sandwich and metal ion at the active site
-
Guo F, Gooding AR, Cech TR: Structure of the Tetrahymena ribozyme: base triple sandwich and metal ion at the active site. Mol Cell 2004, 16:351-362.
-
(2004)
Mol Cell
, vol.16
, pp. 351-362
-
-
Guo, F.1
Gooding, A.R.2
Cech, T.R.3
-
16
-
-
0041976963
-
The molecular evolution and structural organization of self-splicing group I introns at position 516 in nuclear SSU rDNA of myxomycetes
-
Haugen P, Coucheron DH, Rønning SB, Haugli K, Johansen S: The molecular evolution and structural organization of self-splicing group I introns at position 516 in nuclear SSU rDNA of myxomycetes. J Eukaryot Microbiol 2003, 50:283-292.
-
(2003)
J Eukaryot Microbiol
, vol.50
, pp. 283-292
-
-
Haugen, P.1
Coucheron, D.H.2
Rønning, S.B.3
Haugli, K.4
Johansen, S.5
-
18
-
-
0034869058
-
Group I intron lateral transfer between red and brown algal ribosomal RNA
-
Bhattacharya D, Cannone JJ, Gutell RR: Group I intron lateral transfer between red and brown algal ribosomal RNA. Curr Genet 2001, 40:82-90.
-
(2001)
Curr Genet
, vol.40
, pp. 82-90
-
-
Bhattacharya, D.1
Cannone, J.J.2
Gutell, R.R.3
-
19
-
-
0345580612
-
Group I twintrons: Genetic elements in myxomycete and schizopyrenid amoeboflagellate ribosomal DNAs
-
Einvik C, Elde M, Johansen S: Group I twintrons: genetic elements in myxomycete and schizopyrenid amoeboflagellate ribosomal DNAs. J Biotechnol 1998, 64:63-74.
-
(1998)
J Biotechnol
, vol.64
, pp. 63-74
-
-
Einvik, C.1
Elde, M.2
Johansen, S.3
-
20
-
-
0344442429
-
The ability to form full-length intron RNA circles is a general property of nuclear group I introns
-
Nielsen H, Fiskaa T, Birgisdottir AB, Haugen P, Einvik C, Johansen S: The ability to form full-length intron RNA circles is a general property of nuclear group I introns. RNA 2003, 9:1464-1475.
-
(2003)
RNA
, vol.9
, pp. 1464-1475
-
-
Nielsen, H.1
Fiskaa, T.2
Birgisdottir, A.B.3
Haugen, P.4
Einvik, C.5
Johansen, S.6
-
21
-
-
17144387006
-
Site-specific reverse splicing of a HEG-containing group I intron in ribosomal DNA
-
Birgisdottir ÅB, Johansen S: Site-specific reverse splicing of a HEG-containing group I intron in ribosomal DNA. Nucleic Acids Res 2005, 33:2042-2051.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 2042-2051
-
-
Birgisdottir, Å.B.1
Johansen, S.2
-
23
-
-
0035883706
-
Homing endonucleases: Structural and functional insight into the catalysts of intron/intein mobility
-
Chevalier BS, Stoddard BL: Homing endonucleases: structural and functional insight into the catalysts of intron/intein mobility. Nucleic Acids Res 2001, 29:3757-3774.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 3757-3774
-
-
Chevalier, B.S.1
Stoddard, B.L.2
-
24
-
-
0011690678
-
I- NjaI, a nuclear intron-encoded homing endonuclease from Naegleria, generates a pentanucleotide 3′ cleavage-overhang within a 19 base-pair partially symmetric DNA recognition site
-
Elde M, Haugen P, Willassen NP, Johansen S: I- NjaI, a nuclear intron-encoded homing endonuclease from Naegleria, generates a pentanucleotide 3′ cleavage-overhang within a 19 base-pair partially symmetric DNA recognition site. Eur J Biochem 1999, 259:281-288.
-
(1999)
Eur J Biochem
, vol.259
, pp. 281-288
-
-
Elde, M.1
Haugen, P.2
Willassen, N.P.3
Johansen, S.4
-
25
-
-
0034530009
-
Functional characterization of isoschizomeric His-Cys box homing endonucleases from Naegleria
-
Elde M, Willassen NP, Johansen S: Functional characterization of isoschizomeric His-Cys box homing endonucleases from Naegleria. Eur J Biochem 2000, 267:7257-7266.
-
(2000)
Eur J Biochem
, vol.267
, pp. 7257-7266
-
-
Elde, M.1
Willassen, N.P.2
Johansen, S.3
-
26
-
-
0024966071
-
A mobile group I intron in the nuclear rDNA of Physarum polycephalum
-
Muscarella DE, Vogt VM: A mobile group I intron in the nuclear rDNA of Physarum polycephalum. Cell 1989, 56:443-454.
-
(1989)
Cell
, vol.56
, pp. 443-454
-
-
Muscarella, D.E.1
Vogt, V.M.2
-
27
-
-
0030917343
-
In vivo mobility of a group I twintron in nuclear ribosomal DNA of the myxomycete Didymium iridis
-
Johansen S, Elde M, Vader A, Haugen P, Haugli K, Haugli F: In vivo mobility of a group I twintron in nuclear ribosomal DNA of the myxomycete Didymium iridis. Mol Microbiol 1997, 24:737-745.
-
(1997)
Mol Microbiol
, vol.24
, pp. 737-745
-
-
Johansen, S.1
Elde, M.2
Vader, A.3
Haugen, P.4
Haugli, K.5
Haugli, F.6
-
28
-
-
0033995553
-
Expression of the Naegleria intron endonuclease is dependent on a functional group I self-cleaving ribozyme
-
Decatur WA, Johansen S, Vogt VM: Expression of the Naegleria intron endonuclease is dependent on a functional group I self-cleaving ribozyme. RNA 2000, 6:616-627.
-
(2000)
RNA
, vol.6
, pp. 616-627
-
-
Decatur, W.A.1
Johansen, S.2
Vogt, V.M.3
-
29
-
-
0036761518
-
DiGIR1 and NaGIR1. Naturally occurring group I-like ribozymes with unique core organization and evolved biological role
-
Johansen S, Einvik C, Nielsen H: DiGIR1 and NaGIR1. Naturally occurring group I-like ribozymes with unique core organization and evolved biological role. Biochimie 2002, 84:905-912.
-
(2002)
Biochimie
, vol.84
, pp. 905-912
-
-
Johansen, S.1
Einvik, C.2
Nielsen, H.3
-
30
-
-
24644492436
-
An mRNA is capped by a 2′, 5′ lariat catalyzed by a group I-like ribozyme
-
Nielsen H, Westhof E, Johansen S: An mRNA is capped by a 2′, 5′ lariat catalyzed by a group I-like ribozyme. Science 2005, 309:1584-1586.
-
(2005)
Science
, vol.309
, pp. 1584-1586
-
-
Nielsen, H.1
Westhof, E.2
Johansen, S.3
-
31
-
-
0031978817
-
Group I-like ribozymes with a novel core organization perform obligate sequential hydrolytic cleavages at two processing sites
-
Einvik C, Nielsen H, Westhof E, Michel F, Johansen S: Group I-like ribozymes with a novel core organization perform obligate sequential hydrolytic cleavages at two processing sites. RNA 1998, 4:530-541.
-
(1998)
RNA
, vol.4
, pp. 530-541
-
-
Einvik, C.1
Nielsen, H.2
Westhof, E.3
Michel, F.4
Johansen, S.5
-
32
-
-
0034963078
-
A new nomenclature of group I introns in ribosomal DNA
-
Johansen S, Haugen P: A new nomenclature of group I introns in ribosomal DNA. RNA 2001, 7:935-936.
-
(2001)
RNA
, vol.7
, pp. 935-936
-
-
Johansen, S.1
Haugen, P.2
-
33
-
-
3042848954
-
Crystal structure of a self-splicing group I intron with both exons
-
Adams PL, Stahley MR, Kosek AB, Wang J, Strobel SA: Crystal structure of a self-splicing group I intron with both exons. Nature 2004, 430:45-50.
-
(2004)
Nature
, vol.430
, pp. 45-50
-
-
Adams, P.L.1
Stahley, M.R.2
Kosek, A.B.3
Wang, J.4
Strobel, S.A.5
-
34
-
-
0031731440
-
In vitro selection of the Naegleria GIR1 ribozyme identifies three base changes that dramatically improve activity
-
Jabri E, Cech TR: In vitro selection of the Naegleria GIR1 ribozyme identifies three base changes that dramatically improve activity. RNA 1998, 4:1481-1492.
-
(1998)
RNA
, vol.4
, pp. 1481-1492
-
-
Jabri, E.1
Cech, T.R.2
-
35
-
-
0032419957
-
RNA recognition by arginine-rich peptide motifs
-
Weiss MA, Narayana N: RNA recognition by arginine-rich peptide motifs. Biopolymers 1998, 48:167-180.
-
(1998)
Biopolymers
, vol.48
, pp. 167-180
-
-
Weiss, M.A.1
Narayana, N.2
-
36
-
-
18444383371
-
Protein families and RNA recognition
-
Chen Y, Varani G: Protein families and RNA recognition. FEBS J 2005, 272:2088-2097.
-
(2005)
FEBS J
, vol.272
, pp. 2088-2097
-
-
Chen, Y.1
Varani, G.2
-
37
-
-
0033390654
-
Complex group I introns in nuclear SSU rDNA of red and green algae: Evidence of homing-endonuclease pseudogenes in the Bangiophyceae
-
Haugen P, Huss VAR, Nielsen H, Johansen S: Complex group I introns in nuclear SSU rDNA of red and green algae: evidence of homing-endonuclease pseudogenes in the Bangiophyceae. Curr Genet 1999, 36:345-353.
-
(1999)
Curr Genet
, vol.36
, pp. 345-353
-
-
Haugen, P.1
Huss, V.A.R.2
Nielsen, H.3
Johansen, S.4
-
38
-
-
1242352078
-
The evolution of homing endonuclease genes and group I introns in nuclear rDNA
-
Haugen P, Reeb V, Lutzoni F, Bhattacharya D: The evolution of homing endonuclease genes and group I introns in nuclear rDNA. Mol Biol Evol 2004, 21:129-140.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 129-140
-
-
Haugen, P.1
Reeb, V.2
Lutzoni, F.3
Bhattacharya, D.4
-
39
-
-
18744376038
-
The recent transfer of a homing endonuclease gene
-
Haugen P, Wikmark OG, Vader A, Coucheron DH, Sjøttem E, Johansen SD: The recent transfer of a homing endonuclease gene. Nucleic Acids Res 2005, 33:2734-2741.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 2734-2741
-
-
Haugen, P.1
Wikmark, O.G.2
Vader, A.3
Coucheron, D.H.4
Sjøttem, E.5
Johansen, S.D.6
-
40
-
-
0029820625
-
Crystal structure of a group I ribozyme domain: Principles of RNA packing
-
Cate JH, Gooding AR, Podell E, Zhou K, Golden BL, Kundrot CE, Cech TR, Doudna JA: Crystal structure of a group I ribozyme domain: principles of RNA packing. Science 1996, 273:1678-1685.
-
(1996)
Science
, vol.273
, pp. 1678-1685
-
-
Cate, J.H.1
Gooding, A.R.2
Podell, E.3
Zhou, K.4
Golden, B.L.5
Kundrot, C.E.6
Cech, T.R.7
Doudna, J.A.8
-
41
-
-
0028294458
-
Involvement of a GNRA tetraloop in long-range RNA tertiary interactions
-
Jaeger L, Michel F, Westhof E: Involvement of a GNRA tetraloop in long-range RNA tertiary interactions. J Mol Biol 1994, 236:1271-1276.
-
(1994)
J Mol Biol
, vol.236
, pp. 1271-1276
-
-
Jaeger, L.1
Michel, F.2
Westhof, E.3
-
42
-
-
0030959348
-
Rules for RNA recognition of GNRA tetraloops deduced by in vitro selection: Comparison with in vivo evolution
-
Costa M, Michel F: Rules for RNA recognition of GNRA tetraloops deduced by in vitro selection: comparison with in vivo evolution. EMBO J 1997, 16:3289-3302.
-
(1997)
EMBO J
, vol.16
, pp. 3289-3302
-
-
Costa, M.1
Michel, F.2
-
43
-
-
0033560713
-
A conserved motif in group IC3 introns is a new class of GNRA receptor
-
Ikawa Y, Naito D, Aono N, Shiraishi H, Inoue T: A conserved motif in group IC3 introns is a new class of GNRA receptor. Nucleic Acids Res 1999, 27:1859-1865.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 1859-1865
-
-
Ikawa, Y.1
Naito, D.2
Aono, N.3
Shiraishi, H.4
Inoue, T.5
-
44
-
-
0001459489
-
First evidence for diploidy and genetic recombination in free-living amoebae of the genus Naegleria on the basis of electrophoretic variation
-
Cariou ML, Pernin P: First evidence for diploidy and genetic recombination in free-living amoebae of the genus Naegleria on the basis of electrophoretic variation. Genetics 1987, 115:265-270.
-
(1987)
Genetics
, vol.115
, pp. 265-270
-
-
Cariou, M.L.1
Pernin, P.2
-
45
-
-
84966163413
-
Genetic structure of natural populations of the free-living amoeba, Naegleria lovaniensis. Evidence for sexual reproduction
-
Pernin P, Ataya A, Cariou ML: Genetic structure of natural populations of the free-living amoeba, Naegleria lovaniensis. Evidence for sexual reproduction. Heredity 1992, 68:173-181.
-
(1992)
Heredity
, vol.68
, pp. 173-181
-
-
Pernin, P.1
Ataya, A.2
Cariou, M.L.3
-
46
-
-
77956812318
-
Amebo-flagellates as research partners: The laboratory biology of Naegleria and Tetramitus
-
Edited by: Prescott DM. New York: Academic Press
-
Fulton C: Amebo-flagellates as research partners: the laboratory biology of Naegleria and Tetramitus. In Methods in Cell Physiology Volume 4. Edited by: Prescott DM. New York: Academic Press; 1970:341-473.
-
(1970)
Methods in Cell Physiology Volume 4
, vol.4
, pp. 341-473
-
-
Fulton, C.1
-
47
-
-
84987566229
-
Naegleria: A research partner for cell and development biology
-
Fulton C: Naegleria : a research partner for cell and development biology. J Euk Microbiol 1993, 40:520-532.
-
(1993)
J Euk Microbiol
, vol.40
, pp. 520-532
-
-
Fulton, C.1
-
48
-
-
33646795160
-
-
MWG Home [http://www.mwg-biotech.com]
-
MWG Home
-
-
-
50
-
-
0002051540
-
BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
-
Hall TA: BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 1999, 41:95-98.
-
(1999)
Nucl Acids Symp Ser
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
52
-
-
0037735147
-
-
Arizona State University, Tempe, Arizona, USA
-
Kumar S, Tamura K, Jakobsen IB, Nei M: MEGA2: Molecular Evolutionary Genetics Analysis software. Arizona State University, Tempe, Arizona, USA; 2001.
-
(2001)
MEGA2: Molecular Evolutionary Genetics Analysis Software
-
-
Kumar, S.1
Tamura, K.2
Jakobsen, I.B.3
Nei, M.4
-
54
-
-
0034849408
-
MrBayes: Bayesian inference of phylogeny
-
Huelsenbeck JP, Ronquist F: MrBayes: Bayesian inference of phylogeny. Bioinformatics 2001, 17:754-755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
55
-
-
0041386108
-
MRBAYES 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F, Huelsenbeck JP: MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
56
-
-
0031773680
-
Modeltest: Testing the model of DNA substitution
-
Posada D, Crandall KA: Modeltest: testing the model of DNA substitution. Bioinformatics 1998, 14:817-818.
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
|