메뉴 건너뛰기




Volumn 259, Issue 1-2, 1999, Pages 281-288

I-NjaI, a nuclear intron-encoded homing endonuclease from Naegleria, generates a pentanucleotide 3' cleavage-overhang within a 19 base-pair partially symmetric DNA recognition site

Author keywords

Group I intron; Homing endonucleases; Intron mobility; Naeglerta; Ribosomal DNA

Indexed keywords

ENDONUCLEASE;

EID: 0011690678     PISSN: 00142956     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1432-1327.1999.00035.x     Document Type: Article
Times cited : (26)

References (33)
  • 1
    • 77956800890 scopus 로고    scopus 로고
    • Group I introns in biotechnology: Prospects of application of ribozymes and rare-cutting homing endonucleases
    • Johansen, S., Einvik, C., Elde, M., Haugen, P., Vader, A. & Haugli, F. (1997) Group I introns in biotechnology: prospects of application of ribozymes and rare-cutting homing endonucleases. Biotechnol. Annu. Rev. 3, 111-150.
    • (1997) Biotechnol. Annu. Rev. , vol.3 , pp. 111-150
    • Johansen, S.1    Einvik, C.2    Elde, M.3    Haugen, P.4    Vader, A.5    Haugli, F.6
  • 2
    • 0030812487 scopus 로고    scopus 로고
    • Homing endonucleases: Keeping the house in order
    • Belfort, M. & Roberts, R.J. (1997) Homing endonucleases: keeping the house in order. Nucl. Acids Res. 25, 3379-3388.
    • (1997) Nucl. Acids Res. , vol.25 , pp. 3379-3388
    • Belfort, M.1    Roberts, R.J.2
  • 3
  • 5
    • 0032474760 scopus 로고    scopus 로고
    • DNA binding and cleavage by the nuclear intron-encoded endonuclease IPpol
    • Flick, K.E., Jurica, M.S., Monnat, R.J., Jr & Stoddard, B.L. (1998) DNA binding and cleavage by the nuclear intron-encoded endonuclease IPpol. Nature 394, 96-101.
    • (1998) Nature , vol.394 , pp. 96-101
    • Flick, K.E.1    Jurica, M.S.2    Monnat R.J., Jr.3    Stoddard, B.L.4
  • 6
    • 0024966071 scopus 로고
    • A mobile group I intron in the nuclear ribosomal DNA of Physarum polycephalum
    • Muscarella, D.E. & Vogt, V.M. (1989) A mobile group I intron in the nuclear ribosomal DNA of Physarum polycephalum. Cell 56, 443-454.
    • (1989) Cell , vol.56 , pp. 443-454
    • Muscarella, D.E.1    Vogt, V.M.2
  • 7
    • 0025375161 scopus 로고
    • Characterization of I-Ppo, an intron-encoded endonuclease that mediates homing of a group I intron in the ribosomal DNA of Physarum polycephalum
    • Muscarella, D.E., Ellison, E.L., Ruoff, B.M. & Vogt, V.M. (1990) Characterization of I-Ppo, an intron-encoded endonuclease that mediates homing of a group I intron in the ribosomal DNA of Physarum polycephalum. Mol. Cell. Biol. 10, 3386-3396.
    • (1990) Mol. Cell. Biol. , vol.10 , pp. 3386-3396
    • Muscarella, D.E.1    Ellison, E.L.2    Ruoff, B.M.3    Vogt, V.M.4
  • 9
    • 0030917343 scopus 로고    scopus 로고
    • In vivo mobility of a group I intron in nuclear ribosomal DNA of the myxomycete Didymium iridis
    • Johansen, S., Elde, M., Vader, A., Haugen, P., Haugli, K. & Haugli, F. (1997) In vivo mobility of a group I intron in nuclear ribosomal DNA of the myxomycete Didymium iridis. Mol. Microbiol. 24, 737-745.
    • (1997) Mol. Microbiol. , vol.24 , pp. 737-745
    • Johansen, S.1    Elde, M.2    Vader, A.3    Haugen, P.4    Haugli, K.5    Haugli, F.6
  • 10
    • 0032484598 scopus 로고    scopus 로고
    • Degenerate DNA recognition by I-PpoI endonuclease
    • Wittmayer, P.K., McKenzie, J.L. & Raines, R.T. (1998) Degenerate DNA recognition by I-PpoI endonuclease. Gene 206, 11-21.
    • (1998) Gene , vol.206 , pp. 11-21
    • Wittmayer, P.K.1    McKenzie, J.L.2    Raines, R.T.3
  • 11
    • 0032540751 scopus 로고    scopus 로고
    • I-PpoI and I-CreI homing site sequence degeneracy determined by random mutagenesis and sequential in vitro enrichment
    • Argast, G.M., Stephens, K.M., Emond, M.J. & Monnat,R.J. Jr (1998) I-PpoI and I-CreI homing site sequence degeneracy determined by random mutagenesis and sequential in vitro enrichment. J. Mol. Biol. 280, 345-353.
    • (1998) J. Mol. Biol. , vol.280 , pp. 345-353
    • Argast, G.M.1    Stephens, K.M.2    Emond, M.J.3    Monnat R.J., Jr.4
  • 12
    • 0027395847 scopus 로고
    • A mobile group I intron from Physarum polycephalum can insert itself and induce point mutations in the nuclear ribosomal DNA of Saccharomyces cerevisiae
    • Muscarella, D.E. & Vogt, V.M. (1993) A mobile group I intron from Physarum polycephalum can insert itself and induce point mutations in the nuclear ribosomal DNA of Saccharomyces cerevisiae. Mol. Cell. Biol. 13, 1023-1033.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 1023-1033
    • Muscarella, D.E.1    Vogt, V.M.2
  • 13
    • 0028503668 scopus 로고
    • Evidence for the ancestral origin of group I introns in the SSUrDNA of Naegleria spp.
    • De Jonckheere, J.F. (1994) Evidence for the ancestral origin of group I introns in the SSUrDNA of Naegleria spp. J. Eukaryot. Microbiol. 41, 457-463.
    • (1994) J. Eukaryot. Microbiol. , vol.41 , pp. 457-463
    • De Jonckheere, J.F.1
  • 14
    • 0032518218 scopus 로고    scopus 로고
    • Three different group I introns in the nuclear large subunit ribosomal DNA of the amoeboflagellate Naegleria
    • De Jonckheere, J.F. & Brown, S. (1998) Three different group I introns in the nuclear large subunit ribosomal DNA of the amoeboflagellate Naegleria. Nucl. Acids Res. 26, 456-461.
    • (1998) Nucl. Acids Res. , vol.26 , pp. 456-461
    • De Jonckheere, J.F.1    Brown, S.2
  • 15
    • 0030760922 scopus 로고    scopus 로고
    • Naegleria nucleolar introns contain two group I ribozymes with different functions in RNA splicing and processing
    • Einvik, C., Decatur, W.A., Embley, T.M., Vogt, V.M. & Johansen, S., (1997) Naegleria nucleolar introns contain two group I ribozymes with different functions in RNA splicing and processing, RNA 3, 710-720.
    • (1997) RNA , vol.3 , pp. 710-720
    • Einvik, C.1    Decatur, W.A.2    Embley, T.M.3    Vogt, V.M.4    Johansen, S.5
  • 16
    • 0345580612 scopus 로고    scopus 로고
    • Group I twintrons: Genetic elements in myxomycete and schizopyrenid amoeboflagellate ribosomal DNAs
    • Einvik, C., Elde, M. & Johansen, S. (1998) Group I twintrons: genetic elements in myxomycete and schizopyrenid amoeboflagellate ribosomal DNAs. J. Biotechnol. 64, 63-74.
    • (1998) J. Biotechnol. , vol.64 , pp. 63-74
    • Einvik, C.1    Elde, M.2    Johansen, S.3
  • 17
    • 0029115635 scopus 로고
    • Two group I ribozymes with different functions in a nuclear rDNA intron
    • Decatur, W.A., Einvik, C., Johansen, S. & Vogt, V. (1995) Two group I ribozymes with different functions in a nuclear rDNA intron. EMBO J. 14, 4558-4568.
    • (1995) EMBO J. , vol.14 , pp. 4558-4568
    • Decatur, W.A.1    Einvik, C.2    Johansen, S.3    Vogt, V.4
  • 18
    • 0031414413 scopus 로고    scopus 로고
    • Kinetic and secondary structure analysis of Naegleria andersoni GIRl, a group 1 ribozyme whose putative biological function is site-specific hydrolysis
    • Jabri, E., Aigner, S. & Cech, T.R. (1997) Kinetic and secondary structure analysis of Naegleria andersoni GIRl, a group 1 ribozyme whose putative biological function is site-specific hydrolysis, Biochemistry 36, 16345-16354.
    • (1997) Biochemistry , vol.36 , pp. 16345-16354
    • Jabri, E.1    Aigner, S.2    Cech, T.R.3
  • 19
    • 0031978817 scopus 로고    scopus 로고
    • Group I-like ribozymes with a novel core organization perform obligate sequential hydrolytic cleavages at two processing sites
    • Einvik, C., Nielsen, H., Westhof, E., Michel, F. & Johansen, S. (1998) Group I-like ribozymes with a novel core organization perform obligate sequential hydrolytic cleavages at two processing sites, RNA 4, 530-541.
    • (1998) RNA , vol.4 , pp. 530-541
    • Einvik, C.1    Nielsen, H.2    Westhof, E.3    Michel, F.4    Johansen, S.5
  • 20
    • 0024080246 scopus 로고
    • Nucleotide sequence of the Physarum polycephalum small subunit ribosomal RNA as inferred from the gene sequence: Secondary structure and evolutionary implications
    • Johansen, T., Johansen, S. & Haugli, F.B. (1988) Nucleotide sequence of the Physarum polycephalum small subunit ribosomal RNA as inferred from the gene sequence: secondary structure and evolutionary implications. Curr. Genet. 14, 265-273.
    • (1988) Curr. Genet. , vol.14 , pp. 265-273
    • Johansen, T.1    Johansen, S.2    Haugli, F.B.3
  • 21
    • 0024965993 scopus 로고
    • A latent intron-encoded maturase is also an endonuclease needed for intron mobility
    • Wenzlau, J.M., Saldanha, R.J., Butow, R.A. & Perlman, P.S. (1989) A latent intron-encoded maturase is also an endonuclease needed for intron mobility, Cell 56, 421-430.
    • (1989) Cell , vol.56 , pp. 421-430
    • Wenzlau, J.M.1    Saldanha, R.J.2    Butow, R.A.3    Perlman, P.S.4
  • 23
    • 0026669635 scopus 로고
    • Cleavage and recognition pattern of a double-strand-specific endonuclease (I-CreI) encoded by the chloroplast 23S rRNA intron of Chlamydomonas reinhardtii
    • Thompson, A.J., Yuan, X., Kudlicki, W. & Herrin, D.L. (1992) Cleavage and recognition pattern of a double-strand-specific endonuclease (I-CreI) encoded by the chloroplast 23S rRNA intron of Chlamydomonas reinhardtii. Gene 119, 247-251.
    • (1992) Gene , vol.119 , pp. 247-251
    • Thompson, A.J.1    Yuan, X.2    Kudlicki, W.3    Herrin, D.L.4
  • 24
    • 0027093443 scopus 로고
    • The I-CeuI endonuclease recognizes a sequence of 19 base pairs and preferentially cleaves the coding strand of the Chlamydomonas moewusii chloroplast large subunit rRNA gene
    • Marshall, P. & Lemieux, C. (1992) The I-CeuI endonuclease recognizes a sequence of 19 base pairs and preferentially cleaves the coding strand of the Chlamydomonas moewusii chloroplast large subunit rRNA gene. Nucl. Acids Res. 20, 6401-6407.
    • (1992) Nucl. Acids Res. , vol.20 , pp. 6401-6407
    • Marshall, P.1    Lemieux, C.2
  • 25
    • 0027424120 scopus 로고
    • Interaction of the intron-encoded mobility endonuclease I-PpoI with its target site
    • Ellison, E.L. & Vogt, V.M. (1993) Interaction of the intron-encoded mobility endonuclease I-PpoI with its target site. Mol. Cell. Biol. 13, 7531-7539.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 7531-7539
    • Ellison, E.L.1    Vogt, V.M.2
  • 26
    • 0025326727 scopus 로고
    • Compilation of small ribosomal subunit RNA sequences
    • Neefs, J., Van de Peer, Y., Hendriks, L. & R.D.W. (1990) Compilation of small ribosomal subunit RNA sequences. Nucl. Acids Res. 18, 2237-2317.
    • (1990) Nucl. Acids Res. , vol.18 , pp. 2237-2317
    • Neefs, J.1    Van de Peer, Y.2    Hendriks, L.3
  • 27
    • 0002598414 scopus 로고
    • Type II restriction endonucleases
    • (Linn, S.M., Lloyd, R.S. & Roberts, R.J., eds), 2nd edn, Cold Spring, Harbor Laboratory Press, New York
    • Roberts, R.J. & Halford, S.E. (1993) Type II restriction endonucleases. In Nucleases (Linn, S.M., Lloyd, R.S. & Roberts, R.J., eds), 2nd edn, pp. 35-88. Cold Spring, Harbor Laboratory Press, New York.
    • (1993) Nucleases , pp. 35-88
    • Roberts, R.J.1    Halford, S.E.2
  • 28
    • 0030911133 scopus 로고    scopus 로고
    • Recognition and cleavage of DNA by type-II restriction endonucleases
    • Pingoud, A. & Jeltsch, A. (1997) Recognition and cleavage of DNA by type-II restriction endonucleases. Eur. J. Biochem. 246, 1-22.
    • (1997) Eur. J. Biochem. , vol.246 , pp. 1-22
    • Pingoud, A.1    Jeltsch, A.2
  • 29
    • 0032530311 scopus 로고    scopus 로고
    • Crystal structure of restriction endonuclease BglI bound to its interrupted DNA recognition sequence
    • Newman, M., Lunnen, K., Wilson, G., Greci, J., Schildkraut, I. & Phillips, S.E.V. (1998) Crystal structure of restriction endonuclease BglI bound to its interrupted DNA recognition sequence. EMBO J. 17, 5466-5476.
    • (1998) EMBO J. , vol.17 , pp. 5466-5476
    • Newman, M.1    Lunnen, K.2    Wilson, G.3    Greci, J.4    Schildkraut, I.5    Phillips, S.E.V.6
  • 30
    • 0000113348 scopus 로고
    • Recognition and cleavage site of the intron-encoded omega transposase
    • Colleaux, L., Auriol, L., Galibert, F. & Dujon, B. (1988) Recognition and cleavage site of the intron-encoded omega transposase, Proc. Natl Acad. Sci. USA 85, 6022-6026.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 6022-6026
    • Colleaux, L.1    Auriol, L.2    Galibert, F.3    Dujon, B.4
  • 32
    • 0027207339 scopus 로고
    • The td intron endonuclease I-TevI makes extensive sequence-tolerant contacts across the minor groove of its DNA target
    • Bryk, M., Quirk, S.M., Mueller, J.E., Loizos, N., Lawrence, C. & Belfort, M. (1993) The td intron endonuclease I-TevI makes extensive sequence-tolerant contacts across the minor groove of its DNA target. EMBO J. 12, 2141-2149.
    • (1993) EMBO J. , vol.12 , pp. 2141-2149
    • Bryk, M.1    Quirk, S.M.2    Mueller, J.E.3    Loizos, N.4    Lawrence, C.5    Belfort, M.6
  • 33
    • 0025136271 scopus 로고
    • Specificity of restriction endonucleases and DNA modification methyltransferases: A review
    • Kessler, C. & Manta, V. (1990) Specificity of restriction endonucleases and DNA modification methyltransferases: a review. Gene 92, 1-248.
    • (1990) Gene , vol.92 , pp. 1-248
    • Kessler, C.1    Manta, V.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.