-
1
-
-
79959503826
-
The International HapMap Project
-
Consortium T.I.H. The International HapMap Project. Nature 426 (2003) 789-796
-
(2003)
Nature
, vol.426
, pp. 789-796
-
-
Consortium, T.I.H.1
-
2
-
-
0030688004
-
Variations on a theme: cataloging human DNA sequence variation
-
Collins F.S., Guyer M.S., and Charkravarti A. Variations on a theme: cataloging human DNA sequence variation. Science 278 (1997) 1580-1581
-
(1997)
Science
, vol.278
, pp. 1580-1581
-
-
Collins, F.S.1
Guyer, M.S.2
Charkravarti, A.3
-
3
-
-
0032991552
-
Characterization of single-nucleotide polymorphisms in coding regions of human genes
-
Cargill M., Altshuler D., Ireland J., Sklar P., Ardlie K., Patil N., et al. Characterization of single-nucleotide polymorphisms in coding regions of human genes. Nature Genet. 22 (1999) 231-238
-
(1999)
Nature Genet.
, vol.22
, pp. 231-238
-
-
Cargill, M.1
Altshuler, D.2
Ireland, J.3
Sklar, P.4
Ardlie, K.5
Patil, N.6
-
4
-
-
0034191958
-
Towards a structural basis of human non-synonymous single nucleotide polymorphisms
-
Sunyaev S., Ramensky V., and Bork P. Towards a structural basis of human non-synonymous single nucleotide polymorphisms. Trends Genet. 16 (2000) 198-200
-
(2000)
Trends Genet.
, vol.16
, pp. 198-200
-
-
Sunyaev, S.1
Ramensky, V.2
Bork, P.3
-
5
-
-
0035869223
-
Prediction of deleterious human alleles
-
Sunyaev S., Ramensky V., Koch I., Lathe III W., Kondrashov A.S., and Bork P. Prediction of deleterious human alleles. Hum. Mol. Genet. 10 (2001) 591-597
-
(2001)
Hum. Mol. Genet.
, vol.10
, pp. 591-597
-
-
Sunyaev, S.1
Ramensky, V.2
Koch, I.3
Lathe III, W.4
Kondrashov, A.S.5
Bork, P.6
-
6
-
-
0036291145
-
Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations
-
Guerois R., Nielsen J.E., and Serrano L. Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations. J. Mol. Biol. 320 (2002) 369-387
-
(2002)
J. Mol. Biol.
, vol.320
, pp. 369-387
-
-
Guerois, R.1
Nielsen, J.E.2
Serrano, L.3
-
7
-
-
0035026704
-
Predicting deleterious amino acid substitutions
-
Ng P.C., and Henikoff S. Predicting deleterious amino acid substitutions. Genome Res. 11 (2001) 863-874
-
(2001)
Genome Res.
, vol.11
, pp. 863-874
-
-
Ng, P.C.1
Henikoff, S.2
-
8
-
-
0036119504
-
Accounting for human polymorphisms predicted to affect protein function
-
Ng P.C., and Henikoff S. Accounting for human polymorphisms predicted to affect protein function. Genome Res. 12 (2002) 436-446
-
(2002)
Genome Res.
, vol.12
, pp. 436-446
-
-
Ng, P.C.1
Henikoff, S.2
-
9
-
-
0035504763
-
Understanding human disease mutations through the use of interspecific genetic variation
-
Miller M.P., and Kumar S. Understanding human disease mutations through the use of interspecific genetic variation. Hum. Mol. Genet. 10 (2001) 2319-2328
-
(2001)
Hum. Mol. Genet.
, vol.10
, pp. 2319-2328
-
-
Miller, M.P.1
Kumar, S.2
-
10
-
-
0141840821
-
MutDB: annotating human variation with functionally relevant data
-
Mooney S.D., and Altman R.B. MutDB: annotating human variation with functionally relevant data. Bioinformatics 19 (2003) 1858-1860
-
(2003)
Bioinformatics
, vol.19
, pp. 1858-1860
-
-
Mooney, S.D.1
Altman, R.B.2
-
11
-
-
17144461605
-
A phylogenetic approach to assessing the significance of missense mutations in disease genes
-
Santibanez Koref M.F., Gangeswaran R., Santibanez Koref I.P., Shanahan N., and Hancock J.M. A phylogenetic approach to assessing the significance of missense mutations in disease genes. Hum. Mutat. 22 (2003) 51-58
-
(2003)
Hum. Mutat.
, vol.22
, pp. 51-58
-
-
Santibanez Koref, M.F.1
Gangeswaran, R.2
Santibanez Koref, I.P.3
Shanahan, N.4
Hancock, J.M.5
-
12
-
-
0035937259
-
Predicting the functional consequences of non-synonymous single nucleotide polymorphisms: structure-based assessment of amino acid variation
-
Chasman D., and Adams R.M. Predicting the functional consequences of non-synonymous single nucleotide polymorphisms: structure-based assessment of amino acid variation. J. Mol. Biol. 307 (2001) 683-706
-
(2001)
J. Mol. Biol.
, vol.307
, pp. 683-706
-
-
Chasman, D.1
Adams, R.M.2
-
13
-
-
0036300807
-
Characterization of disease-associated single amino acid polymorphisms in terms of sequence and structure properties
-
Ferrer-Costa C., Orozco M., and de la Cruz X. Characterization of disease-associated single amino acid polymorphisms in terms of sequence and structure properties. J. Mol. Biol. 315 (2002) 771-786
-
(2002)
J. Mol. Biol.
, vol.315
, pp. 771-786
-
-
Ferrer-Costa, C.1
Orozco, M.2
de la Cruz, X.3
-
14
-
-
0036387236
-
Evaluation of structural and evolutionary contributions to deleterious mutation prediction
-
Saunders C.T., and Baker D. Evaluation of structural and evolutionary contributions to deleterious mutation prediction. J. Mol. Biol. 322 (2002) 891-901
-
(2002)
J. Mol. Biol.
, vol.322
, pp. 891-901
-
-
Saunders, C.T.1
Baker, D.2
-
15
-
-
0001050687
-
Adaptive molecular evolution
-
Balding D.J., Bishop M., and Cannings C. (Eds), Wiley, New York
-
Yang Z. Adaptive molecular evolution. In: Balding D.J., Bishop M., and Cannings C. (Eds). Handbook of Statistical Genetics (2000), Wiley, New York 237-350
-
(2000)
Handbook of Statistical Genetics
, pp. 237-350
-
-
Yang, Z.1
-
16
-
-
0027403961
-
Unbiased estimation of the rates of synonymous and nonsynonymous substitution
-
Li W.H. Unbiased estimation of the rates of synonymous and nonsynonymous substitution. J. Mol. Evol. 36 (1993) 96-99
-
(1993)
J. Mol. Evol.
, vol.36
, pp. 96-99
-
-
Li, W.H.1
-
17
-
-
0027533924
-
Evolution of the Zfx and Zfy genes: rates and interdependence between the genes
-
Pamilo P., and Bianchi N.O. Evolution of the Zfx and Zfy genes: rates and interdependence between the genes. Mol. Biol. Evol. 10 (1993) 271-281
-
(1993)
Mol. Biol. Evol.
, vol.10
, pp. 271-281
-
-
Pamilo, P.1
Bianchi, N.O.2
-
18
-
-
0033979433
-
Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
-
Yang Z., and Nielsen R. Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. Mol. Biol. Evol. 17 (2000) 32-43
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 32-43
-
-
Yang, Z.1
Nielsen, R.2
-
19
-
-
0028168856
-
A codon-based model of nucleotide substitution for protein-coding DNA sequences
-
Goldman N., and Yang Z. A codon-based model of nucleotide substitution for protein-coding DNA sequences. Mol. Biol. Evol. 11 (1994) 725-736
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 725-736
-
-
Goldman, N.1
Yang, Z.2
-
20
-
-
0028024626
-
A likelihood approach for comparing synonymous and non-synonymous nucleotide substitution rates, with application to the chloroplast genome
-
Muse S.V., and Gaut B.S. A likelihood approach for comparing synonymous and non-synonymous nucleotide substitution rates, with application to the chloroplast genome. Mol. Biol. Evol. 11 (1994) 715-724
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 715-724
-
-
Muse, S.V.1
Gaut, B.S.2
-
21
-
-
0030683599
-
PAML: a program package for phylogenetic analysis by maximum likelihood
-
Yang Z. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13 (1997) 555-556
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
22
-
-
17444412589
-
Detecting amino acid sites under positive selection and purifying selection
-
Massingham T., and Goldman N. Detecting amino acid sites under positive selection and purifying selection. Genetics 169 (2005) 1753-1762
-
(2005)
Genetics
, vol.169
, pp. 1753-1762
-
-
Massingham, T.1
Goldman, N.2
-
23
-
-
0029911703
-
Dominant-negative p53 mutations selected in yeast hit cancer hot spots
-
Brachmann R.K., Vidal M., and Boeke J.D. Dominant-negative p53 mutations selected in yeast hit cancer hot spots. Proc. Natl Acad. Sci. USA 93 (1996) 4091-4095
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 4091-4095
-
-
Brachmann, R.K.1
Vidal, M.2
Boeke, J.D.3
-
25
-
-
0034869859
-
Latent and active p53 are identical in conformation
-
Ayed A., Mulder F.A., Yi G.S., Lu Y., Kay L.E., and Arrowsmith C.H. Latent and active p53 are identical in conformation. Nature Struct. Biol. 8 (2001) 756-760
-
(2001)
Nature Struct. Biol.
, vol.8
, pp. 756-760
-
-
Ayed, A.1
Mulder, F.A.2
Yi, G.S.3
Lu, Y.4
Kay, L.E.5
Arrowsmith, C.H.6
-
26
-
-
0036258111
-
The IARC TP 53 database: new online mutation analysis and recommendations to users
-
Olivier M., Eeles R., Hollstein M., Khan M.A., Harris C.C., and Hainaut P. The IARC TP 53 database: new online mutation analysis and recommendations to users. Hum. Mutat. 19 (2002) 607-614
-
(2002)
Hum. Mutat.
, vol.19
, pp. 607-614
-
-
Olivier, M.1
Eeles, R.2
Hollstein, M.3
Khan, M.A.4
Harris, C.C.5
Hainaut, P.6
-
27
-
-
0027983669
-
Crystal structure of a p53 tumor suppressor-DNA complex: understanding tumorigenic mutations
-
Cho Y., Gorina S., Jeffrey P.D., and Pavletich N.P. Crystal structure of a p53 tumor suppressor-DNA complex: understanding tumorigenic mutations. Science 265 (1994) 346-355
-
(1994)
Science
, vol.265
, pp. 346-355
-
-
Cho, Y.1
Gorina, S.2
Jeffrey, P.D.3
Pavletich, N.P.4
-
28
-
-
0034097381
-
Codon-substitution models for heterogeneous selection pressure at amino acid sites
-
Yang Z., Nielsen R., Goldman N., and Pedersen A.M. Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 155 (2000) 431-449
-
(2000)
Genetics
, vol.155
, pp. 431-449
-
-
Yang, Z.1
Nielsen, R.2
Goldman, N.3
Pedersen, A.M.4
-
29
-
-
84970061891
-
Solution structure of the tetrameric minimum transforming domain of p53
-
Lee W., Harvey T.S., Yin Y., Yau P., Litchfield D., and Arrowsmith C.H. Solution structure of the tetrameric minimum transforming domain of p53. Nature Struct. Biol. 1 (1994) 877-890
-
(1994)
Nature Struct. Biol.
, vol.1
, pp. 877-890
-
-
Lee, W.1
Harvey, T.S.2
Yin, Y.3
Yau, P.4
Litchfield, D.5
Arrowsmith, C.H.6
-
30
-
-
0033954256
-
The Protein Data Bank
-
Berman H.M., Westbrook J., Feng Z., Gilliland G., Bhat T.N., Weissig H., et al. The Protein Data Bank. Nucl. Acids Res. 28 (2000) 235-242
-
(2000)
Nucl. Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
-
31
-
-
0032525133
-
Nine hydrophobic side chains are key determinants of the thermodynamic stability and oligomerization status of tumour suppressor p53 tetramerization domain
-
Mateu M.G., and Fersht A.R. Nine hydrophobic side chains are key determinants of the thermodynamic stability and oligomerization status of tumour suppressor p53 tetramerization domain. EMBO J. 17 (1998) 2748-2758
-
(1998)
EMBO J.
, vol.17
, pp. 2748-2758
-
-
Mateu, M.G.1
Fersht, A.R.2
-
33
-
-
10844238962
-
Computational studies and peptidomimetic design for the human p53-MDM2 complex
-
Zhong H., and Carlson H.A. Computational studies and peptidomimetic design for the human p53-MDM2 complex. Proteins: Struct. Funct. Genet. 58 (2005) 222-234
-
(2005)
Proteins: Struct. Funct. Genet.
, vol.58
, pp. 222-234
-
-
Zhong, H.1
Carlson, H.A.2
-
34
-
-
0030797585
-
Activation of p53 sequence-specific DNA binding by acetylation of the p53 C-terminal domain
-
Gu W., and Roeder R.G. Activation of p53 sequence-specific DNA binding by acetylation of the p53 C-terminal domain. Cell 90 (1997) 595-606
-
(1997)
Cell
, vol.90
, pp. 595-606
-
-
Gu, W.1
Roeder, R.G.2
-
35
-
-
0035868964
-
p300/CBP-mediated p53 acetylation is commonly induced by p53-activating agents and inhibited by MDM2
-
Ito A., Lai C.H., Zhao X., Saito S., Hamilton M.H., Appella E., and Yao T.P. p300/CBP-mediated p53 acetylation is commonly induced by p53-activating agents and inhibited by MDM2. EMBO J. 20 (2001) 1331-1340
-
(2001)
EMBO J.
, vol.20
, pp. 1331-1340
-
-
Ito, A.1
Lai, C.H.2
Zhao, X.3
Saito, S.4
Hamilton, M.H.5
Appella, E.6
Yao, T.P.7
-
36
-
-
0033570892
-
Activation of p53 by conjugation to the ubiquitin-like protein SUMO-1
-
Gostissa M., Hengstermann A., Fogal V., Sandy P., Schwarz S.E., Scheffner M., and Del Sal G. Activation of p53 by conjugation to the ubiquitin-like protein SUMO-1. EMBO J. 18 (1999) 6462-6471
-
(1999)
EMBO J.
, vol.18
, pp. 6462-6471
-
-
Gostissa, M.1
Hengstermann, A.2
Fogal, V.3
Sandy, P.4
Schwarz, S.E.5
Scheffner, M.6
Del Sal, G.7
-
38
-
-
3843084078
-
The COSMIC (Catalogue of Somatic Mutations in Cancer) database and website
-
Bamford S., Dawson E., Forbes S., Clements J., Pettett R., Dogan A., et al. The COSMIC (Catalogue of Somatic Mutations in Cancer) database and website. Br. J. Cancer 91 (2004) 355-358
-
(2004)
Br. J. Cancer
, vol.91
, pp. 355-358
-
-
Bamford, S.1
Dawson, E.2
Forbes, S.3
Clements, J.4
Pettett, R.5
Dogan, A.6
-
39
-
-
31144465926
-
Hearing silence: non-neutral evolution at synonymous sites in mammals
-
Chamary J.V., Parmley J.L., and Hurst L.D. Hearing silence: non-neutral evolution at synonymous sites in mammals. Nature Rev. Genet. 7 (2006) 98-108
-
(2006)
Nature Rev. Genet.
, vol.7
, pp. 98-108
-
-
Chamary, J.V.1
Parmley, J.L.2
Hurst, L.D.3
-
40
-
-
0038104863
-
Selection on human genes as revealed by comparisons to chimpanzee cDNA
-
Hellmann I., Zollner S., Enard W., Ebersberger I., Nickel B., and Paabo S. Selection on human genes as revealed by comparisons to chimpanzee cDNA. Genome Res. 13 (2003) 831-837
-
(2003)
Genome Res.
, vol.13
, pp. 831-837
-
-
Hellmann, I.1
Zollner, S.2
Enard, W.3
Ebersberger, I.4
Nickel, B.5
Paabo, S.6
-
41
-
-
0035865322
-
A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms
-
Sachidanandam R., Weissman D., Schmidt S.C., Kakol J.M., Stein L.D., Marth G., et al. A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature 409 (2001) 928-933
-
(2001)
Nature
, vol.409
, pp. 928-933
-
-
Sachidanandam, R.1
Weissman, D.2
Schmidt, S.C.3
Kakol, J.M.4
Stein, L.D.5
Marth, G.6
-
42
-
-
17144416442
-
DNA, diseases and databases: disastrously deficient
-
Patrinos G.P., and Brookes A.J. DNA, diseases and databases: disastrously deficient. Trends Genet. 21 (2005) 333-338
-
(2005)
Trends Genet.
, vol.21
, pp. 333-338
-
-
Patrinos, G.P.1
Brookes, A.J.2
-
43
-
-
13444251422
-
Ensembl 2005
-
Hubbard T., Andrews D., Caccamo M., Cameron G., Chen Y., Clamp M., et al. Ensembl 2005. Nucl. Acids Res. 33 (2005) D447-D453
-
(2005)
Nucl. Acids Res.
, vol.33
-
-
Hubbard, T.1
Andrews, D.2
Caccamo, M.3
Cameron, G.4
Chen, Y.5
Clamp, M.6
-
45
-
-
4143095940
-
Novel evolutionary relationship among four fish model systems
-
Chen W.J., Orti G., and Meyer A. Novel evolutionary relationship among four fish model systems. Trends Genet. 20 (2004) 424-431
-
(2004)
Trends Genet.
, vol.20
, pp. 424-431
-
-
Chen, W.J.1
Orti, G.2
Meyer, A.3
-
46
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl. Acids Res. 22 (1994) 4673-4680
-
(1994)
Nucl. Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
47
-
-
0034897709
-
Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution
-
Anisimova M., Bielawski J.P., and Yang Z. Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution. Mol. Biol. Evol. 18 (2001) 1585-1592
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 1585-1592
-
-
Anisimova, M.1
Bielawski, J.P.2
Yang, Z.3
-
48
-
-
0036272936
-
Accuracy and power of bayes prediction of amino acid sites under positive selection
-
Anisimova M., Bielawski J.P., and Yang Z. Accuracy and power of bayes prediction of amino acid sites under positive selection. Mol. Biol. Evol. 19 (2002) 950-958
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 950-958
-
-
Anisimova, M.1
Bielawski, J.P.2
Yang, Z.3
-
49
-
-
8544225780
-
Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites
-
Wong W.S., Yang Z., Goldman N., and Nielsen R. Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites. Genetics 168 (2004) 1041-1051
-
(2004)
Genetics
, vol.168
, pp. 1041-1051
-
-
Wong, W.S.1
Yang, Z.2
Goldman, N.3
Nielsen, R.4
-
50
-
-
0031972161
-
Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene
-
Nielsen R., and Yang Z. Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene. Genetics 148 (1998) 929-936
-
(1998)
Genetics
, vol.148
, pp. 929-936
-
-
Nielsen, R.1
Yang, Z.2
-
51
-
-
16344378246
-
Bayes empirical bayes inference of amino acid sites under positive selection
-
Yang Z., Wong W.S., and Nielsen R. Bayes empirical bayes inference of amino acid sites under positive selection. Mol. Biol. Evol. 22 (2005) 1107-1118
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1107-1118
-
-
Yang, Z.1
Wong, W.S.2
Nielsen, R.3
-
52
-
-
0032849322
-
A method for detecting positive selection at single amino acid sites
-
Suzuki Y., and Gojobori T. A method for detecting positive selection at single amino acid sites. Mol. Biol. Evol. 16 (1999) 1315-1328
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1315-1328
-
-
Suzuki, Y.1
Gojobori, T.2
-
53
-
-
0030305457
-
R: a language for data analysis and graphics
-
Ihaka R., and Gentleman R. R: a language for data analysis and graphics. J. Comput. Graph. Stat. 5 (1996) 299-314
-
(1996)
J. Comput. Graph. Stat.
, vol.5
, pp. 299-314
-
-
Ihaka, R.1
Gentleman, R.2
-
54
-
-
0029881007
-
MOLMOL: a program for display and analysis of macromolecular structures
-
51-55
-
Koradi R., Billeter M., and Wuthrich K. MOLMOL: a program for display and analysis of macromolecular structures. J. Mol. Graph. 14 (1996) 51-55
-
(1996)
J. Mol. Graph.
, vol.14
-
-
Koradi, R.1
Billeter, M.2
Wuthrich, K.3
|