메뉴 건너뛰기




Volumn 33, Issue 6, 2006, Pages 423-430

Targeting polyketide synthase gene pool within actinomycetes: New degenerate primers

Author keywords

Actinomycetes; Degenerate primers; Polyketide synthases; Stepdown PCR

Indexed keywords

ASCOMYCIN; NATURAL PRODUCT; POLYKETIDE SYNTHASE; PRIMER DNA; RAPAMYCIN; TACROLIMUS;

EID: 33646447687     PISSN: 13675435     EISSN: 14765535     Source Type: Journal    
DOI: 10.1007/s10295-006-0080-9     Document Type: Article
Times cited : (11)

References (38)
  • 2
    • 0033763409 scopus 로고    scopus 로고
    • A complex multienzyme system encoded by five polyketide synthase genes is involved in the biosynthesis of the 26-membered polyene macrolide pimaricin in Streptomyces natalensis
    • Aparicio JF, Fouces R, Mendes MV, Olivera N, Martin JF (2000) A complex multienzyme system encoded by five polyketide synthase genes is involved in the biosynthesis of the 26-membered polyene macrolide pimaricin in Streptomyces natalensis. Chem Biol 11:895-905
    • (2000) Chem Biol , vol.11 , pp. 895-905
    • Aparicio, J.F.1    Fouces, R.2    Mendes, M.V.3    Olivera, N.4    Martin, J.F.5
  • 4
    • 0024449599 scopus 로고
    • Analysis of the nucleotide sequence of the Streptomyces glaucescens tcmI genes provides key information about the enzymology of the polyketide antibiotic biosynthesis
    • Bibb MJ, Biro S, Motamedi H, Collins JF, Hutchinson CR (1989) Analysis of the nucleotide sequence of the Streptomyces glaucescens tcmI genes provides key information about the enzymology of the polyketide antibiotic biosynthesis. EMBO J 8:2727-2736
    • (1989) EMBO J , vol.8 , pp. 2727-2736
    • Bibb, M.J.1    Biro, S.2    Motamedi, H.3    Collins, J.F.4    Hutchinson, C.R.5
  • 5
    • 0034047123 scopus 로고    scopus 로고
    • Biosynthesis of the polyene anti-fungal antibiotic nystatin in Streptomyces noursei ATCC11455: Analysis of the gene cluster and deduction of the biosynthetic pathway
    • Brautaset T, Sekurova ON, Sletta H, Ellingsen TE, Strlm AR, Valla S, Zotchev SB (2000) Biosynthesis of the polyene anti-fungal antibiotic nystatin in Streptomyces noursei ATCC11455: analysis of the gene cluster and deduction of the biosynthetic pathway. Chem Biol 7:395-403
    • (2000) Chem Biol , vol.7 , pp. 395-403
    • Brautaset, T.1    Sekurova, O.N.2    Sletta, H.3    Ellingsen, T.E.4    Strlm, A.R.5    Valla, S.6    Zotchev, S.B.7
  • 6
    • 0034930476 scopus 로고    scopus 로고
    • Amphotericin biosynthesis in Streptomyces nodosus: Deductions from analysis of polyketide synthase and late genes
    • Caffrey P, Lynch S, Flood E, Finnan S, Markiyan O (2001) Amphotericin biosynthesis in Streptomyces nodosus: deductions from analysis of polyketide synthase and late genes. Chem Biol 8:713-723
    • (2001) Chem Biol , vol.8 , pp. 713-723
    • Caffrey, P.1    Lynch, S.2    Flood, E.3    Finnan, S.4    Markiyan, O.5
  • 8
    • 0025081416 scopus 로고
    • An unusually large multifunctional polypeptide in the erythromycin producing polyketide synthase of Saccharopolyspora erythraea
    • Cortes J, Haydock SF, Roberts GA, Bevitt DJ, Leadlay PF (1990) An unusually large multifunctional polypeptide in the erythromycin producing polyketide synthase of Saccharopolyspora erythraea. Nature 384:176-178
    • (1990) Nature , vol.384 , pp. 176-178
    • Cortes, J.1    Haydock, S.F.2    Roberts, G.A.3    Bevitt, D.J.4    Leadlay, P.F.5
  • 9
    • 0014013696 scopus 로고
    • A membrane filter technique for the detection of complementary DNA
    • Denhardt DT (1966) A membrane filter technique for the detection of complementary DNA. Biochem Biophys Res Commun 23:641-646
    • (1966) Biochem Biophys Res Commun , vol.23 , pp. 641-646
    • Denhardt, D.T.1
  • 10
    • 0026415106 scopus 로고
    • Modular organization of the genes required for complex polyketide biosynthesis
    • Donadio S, Staver MJ, McAlpine JB, Swanson SJ, Katz L (1991) Modular organization of the genes required for complex polyketide biosynthesis. Science 252:675-679
    • (1991) Science , vol.252 , pp. 675-679
    • Donadio, S.1    Staver, M.J.2    McAlpine, J.B.3    Swanson, S.J.4    Katz, L.5
  • 11
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 13
    • 0026657813 scopus 로고
    • Nucleotide sequence and deduced functions of a set of cotranscribed genes of Streptomyces coelicolor A3(2) including the polyketide synthase for the antibiotic actinorhodin
    • Fernandez-Moreno MA, Martinez E, Boto L, Hopwood DA, Malpatrida F (1992) Nucleotide sequence and deduced functions of a set of cotranscribed genes of Streptomyces coelicolor A3(2) including the polyketide synthase for the antibiotic actinorhodin. J Biol Chem 267:19278-19290
    • (1992) J Biol Chem , vol.267 , pp. 19278-19290
    • Fernandez-Moreno, M.A.1    Martinez, E.2    Boto, L.3    Hopwood, D.A.4    Malpatrida, F.5
  • 14
    • 0001434751 scopus 로고
    • Queener SW, Day LE (eds) Academic, New York
    • Grandall LW, Hamill RL (1986) In: Queener SW, Day LE (eds) The bacteria, vol 9. Academic, New York, pp 355-401
    • (1986) The Bacteria , vol.9 , pp. 355-401
    • Grandall, L.W.1    Hamill, R.L.2
  • 15
    • 0029923481 scopus 로고    scopus 로고
    • High and low annealing temperatures increase both specificity and yield in TD and SD PCR
    • Hecker KH, Roux KH (1996) High and low annealing temperatures increase both specificity and yield in TD and SD PCR. BioTechniques 20:478-485
    • (1996) BioTechniques , vol.20 , pp. 478-485
    • Hecker, K.H.1    Roux, K.H.2
  • 16
    • 0001747786 scopus 로고    scopus 로고
    • Genetic contributions to understanding polyketide synthases
    • Hopwood DA (1997) Genetic contributions to understanding polyketide synthases. Chem Rev 97:2485-2497
    • (1997) Chem Rev , vol.97 , pp. 2485-2497
    • Hopwood, D.A.1
  • 18
    • 0033578297 scopus 로고    scopus 로고
    • Organization of the biosynthetic gene cluster for the polyketide anthelmintic macrolide avermectin in Streptomyces avermitilis
    • USA
    • Ikeda H, Nonomiya T, Usami M, Ohta T, Omura S (1999) Organization of the biosynthetic gene cluster for the polyketide anthelmintic macrolide avermectin in Streptomyces avermitilis. Proc Natl Acad Sci USA 96:9509-9514
    • (1999) Proc Natl Acad Sci , vol.96 , pp. 9509-9514
    • Ikeda, H.1    Nonomiya, T.2    Usami, M.3    Ohta, T.4    Omura, S.5
  • 20
    • 0001436716 scopus 로고    scopus 로고
    • Manipulation of modular polyketide synthases
    • Katz L (1997) Manipulation of modular polyketide synthases. Chem Rev 97:2557-2576
    • (1997) Chem Rev , vol.97 , pp. 2557-2576
    • Katz, L.1
  • 21
    • 4244059507 scopus 로고    scopus 로고
    • Harnessing the biosynthetic potential of modular polyketide synthases
    • Khosla C (1997) Harnessing the biosynthetic potential of modular polyketide synthases. Chem Rev 97:2577-2590
    • (1997) Chem Rev , vol.97 , pp. 2577-2590
    • Khosla, C.1
  • 22
    • 0030249160 scopus 로고    scopus 로고
    • Generation of polyketide libraries via combinatorial biosynthesis
    • Khosla C, Zawada RJX (1996) Generation of polyketide libraries via combinatorial biosynthesis. Trends Biotechnol 14:335-341
    • (1996) Trends Biotechnol , vol.14 , pp. 335-341
    • Khosla, C.1    Zawada, R.J.X.2
  • 23
    • 0029064652 scopus 로고
    • Rational design of aromatic polyketide natural products by recombinant assembly of enzymatic subunits
    • MacDaniel R, Ebert-Khosla S, Hopwood DA, Khosla C (1995) Rational design of aromatic polyketide natural products by recombinant assembly of enzymatic subunits. Nature 375:549-554
    • (1995) Nature , vol.375 , pp. 549-554
    • MacDaniel, R.1    Ebert-Khosla, S.2    Hopwood, D.A.3    Khosla, C.4
  • 24
    • 0026667294 scopus 로고
    • Complex organization of Streptomyces avermitilis genes encoding the avermectin polyketide synthase
    • MacNeil DJ, Occi JL, Gewain KM, MacNeil T, Gibbons PH, Ruby CL, Danis SJ (1992) Complex organization of Streptomyces avermitilis genes encoding the avermectin polyketide synthase. Gene 115:119-225
    • (1992) Gene , vol.115 , pp. 119-225
    • MacNeil, D.J.1    Occi, J.L.2    Gewain, K.M.3    MacNeil, T.4    Gibbons, P.H.5    Ruby, C.L.6    Danis, S.J.7
  • 25
    • 0028825809 scopus 로고
    • Nucleotide sequences of streptomycete 16S ribosomal DNA: Towards a specific identification system for streptomycetes using PCR
    • Mehling A, Wehmeier FU, Piepersberg W (1995) Nucleotide sequences of streptomycete 16S ribosomal DNA: towards a specific identification system for streptomycetes using PCR. Microbiology 141:2139-2147
    • (1995) Microbiology , vol.141 , pp. 2139-2147
    • Mehling, A.1    Wehmeier, F.U.2    Piepersberg, W.3
  • 27
    • 0030707561 scopus 로고    scopus 로고
    • Will natural products remain an important source of drug research for the future?
    • Nisbet LJ, Moore M (1997) Will natural products remain an important source of drug research for the future? Curr Opin Biotechnol 8:708-712
    • (1997) Curr Opin Biotechnol , vol.8 , pp. 708-712
    • Nisbet, L.J.1    Moore, M.2
  • 29
    • 0028180280 scopus 로고
    • Using mismatched primer-template pairs in TD PCR
    • Roux KH (1994) Using mismatched primer-template pairs in TD PCR. BioTechniques 16:812-814
    • (1994) BioTechniques , vol.16 , pp. 812-814
    • Roux, K.H.1
  • 30
    • 0028952289 scopus 로고
    • Optimization and troubleshooting in PCR
    • Roux KH (1995) Optimization and troubleshooting in PCR. PCR Methods Appl 4:S185-S194
    • (1995) PCR Methods Appl , vol.4
    • Roux, K.H.1
  • 31
    • 33646445415 scopus 로고    scopus 로고
    • One-step optimization using touchdown and stepdown PCR. PCR cloning protocols: From molecular cloning to genetic engineering
    • White BA (ed) Humana Press, Totowa
    • Roux KH, Hecker KH (1997) One-step optimization using touchdown and stepdown PCR. PCR cloning protocols: from molecular cloning to genetic engineering. In: White BA (ed) Methods in molecular biology, vol 67. Humana Press, Totowa
    • (1997) Methods in Molecular Biology , vol.67
    • Roux, K.H.1    Hecker, K.H.2
  • 34
    • 0024438917 scopus 로고
    • Structure and deduced function of the granaticin producing polyketide synthase gene cluster of Streptomyces violaceoruber TÜ22
    • Sherman DH, Malpatrida F, Bibb MJ, Kieser HH, Hopwood DA (1989) Structure and deduced function of the granaticin producing polyketide synthase gene cluster of Streptomyces violaceoruber TÜ22. EMBO J 8:2717-2725
    • (1989) EMBO J , vol.8 , pp. 2717-2725
    • Sherman, D.H.1    Malpatrida, F.2    Bibb, M.J.3    Kieser, H.H.4    Hopwood, D.A.5
  • 35
    • 12844272203 scopus 로고    scopus 로고
    • Construction of Saccharomyces cerevisiae strain FAV20 useful in detection of immunosuppressants produced by soil actinomycetes
    • Skoko N, Vujovic J, Savic M, Papic N, Vasiljevic B, Ljubijankic G (2005) Construction of Saccharomyces cerevisiae strain FAV20 useful in detection of immunosuppressants produced by soil actinomycetes. J Microbiol Methods 61:137-140
    • (2005) J Microbiol Methods , vol.61 , pp. 137-140
    • Skoko, N.1    Vujovic, J.2    Savic, M.3    Papic, N.4    Vasiljevic, B.5    Ljubijankic, G.6
  • 36
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 37
    • 0019151854 scopus 로고
    • Thin-layer chromatography of macrolide antibiotics
    • Vanderhaeghe H, Kerremans L (1980) Thin-layer chromatography of macrolide antibiotics. J Chromatogr 193:119-127
    • (1980) J Chromatogr , vol.193 , pp. 119-127
    • Vanderhaeghe, H.1    Kerremans, L.2
  • 38
    • 0034643859 scopus 로고    scopus 로고
    • The FK520 gene cluster of Streptomyces hygroscopicus var. ascomyceticus (ATCC14891) contains genes for biosynthesis of unusual polyketide extender units
    • Wu K, Chung L, Revill WP, Katz L, Reeves CD (2000) The FK520 gene cluster of Streptomyces hygroscopicus var. ascomyceticus (ATCC14891) contains genes for biosynthesis of unusual polyketide extender units. Gene 251:81-90
    • (2000) Gene , vol.251 , pp. 81-90
    • Wu, K.1    Chung, L.2    Revill, W.P.3    Katz, L.4    Reeves, C.D.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.