-
1
-
-
0029920331
-
Specificity of ribonucleoprotein interaction determined by RNA folding during complex formation
-
Allain F.-H.T., Gubser C.C., Howe P.W.A., Nagai K., Neuhaus D., and Varani G. Specificity of ribonucleoprotein interaction determined by RNA folding during complex formation. Nature 380 (1996) 646-650
-
(1996)
Nature
, vol.380
, pp. 646-650
-
-
Allain, F.-H.T.1
Gubser, C.C.2
Howe, P.W.A.3
Nagai, K.4
Neuhaus, D.5
Varani, G.6
-
2
-
-
0029978824
-
Solution structure of the N-terminal RNP domain of U1A protein: the role of C-terminal residues in structure stability and RNA binding
-
Avis J., Allain F.H.-T., Howe P.W.A., Varani G., Neuhaus D., and Nagai K. Solution structure of the N-terminal RNP domain of U1A protein: the role of C-terminal residues in structure stability and RNA binding. J. Mol. Biol. 257 (1996) 398-411
-
(1996)
J. Mol. Biol.
, vol.257
, pp. 398-411
-
-
Avis, J.1
Allain, F.H.-T.2
Howe, P.W.A.3
Varani, G.4
Neuhaus, D.5
Nagai, K.6
-
3
-
-
0027753933
-
Analysis of the RNA-recognition motif and RS and RGG domains: conservation in Metazoan pre-mRNA splicing factors
-
Birney E., Kumar S., and Krainer A.R. Analysis of the RNA-recognition motif and RS and RGG domains: conservation in Metazoan pre-mRNA splicing factors. Nucleic Acids Res. 21 (1993) 5803-5816
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 5803-5816
-
-
Birney, E.1
Kumar, S.2
Krainer, A.R.3
-
4
-
-
0033003335
-
Protein backbone angle restraints from searching a database for chemical shift and sequence homology
-
Cornilescu G., Delaglio F., and Bax A. Protein backbone angle restraints from searching a database for chemical shift and sequence homology. J. Biomol. NMR 13 (1999) 289-302
-
(1999)
J. Biomol. NMR
, vol.13
, pp. 289-302
-
-
Cornilescu, G.1
Delaglio, F.2
Bax, A.3
-
5
-
-
0035919649
-
Covariance analysis of RNA recognition motifs identifies functionally linked amino acids
-
Crowder S., Holton J., and Alber T. Covariance analysis of RNA recognition motifs identifies functionally linked amino acids. J. Mol. Biol. 310 (2001) 793-800
-
(2001)
J. Mol. Biol.
, vol.310
, pp. 793-800
-
-
Crowder, S.1
Holton, J.2
Alber, T.3
-
6
-
-
0030987610
-
Probing the role of packing specificity in protein design
-
Dahiyat B.I., and Mayo S.L. Probing the role of packing specificity in protein design. Proc. Natl. Acad. Sci. USA 94 (1997) 10172-10177
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 10172-10177
-
-
Dahiyat, B.I.1
Mayo, S.L.2
-
7
-
-
0041387567
-
A large scale test of computational protein design: folding and stability of nine completely redesigned globular proteins
-
Dantas G., Kuhlman B., Callender D., Wong M., and Baker D. A large scale test of computational protein design: folding and stability of nine completely redesigned globular proteins. J. Mol. Biol. 332 (2003) 449-460
-
(2003)
J. Mol. Biol.
, vol.332
, pp. 449-460
-
-
Dantas, G.1
Kuhlman, B.2
Callender, D.3
Wong, M.4
Baker, D.5
-
8
-
-
14844355104
-
Protein and RNA dynamics play key roles in determining the specific recognition of GU-rich polydenylation regulatory elements by human Cstf-64 protein
-
Deka P., Paranj P.K., Perez-Canadillas J.M., and Varani G. Protein and RNA dynamics play key roles in determining the specific recognition of GU-rich polydenylation regulatory elements by human Cstf-64 protein. J. Mol. Biol. 347 (2005) 719-733
-
(2005)
J. Mol. Biol.
, vol.347
, pp. 719-733
-
-
Deka, P.1
Paranj, P.K.2
Perez-Canadillas, J.M.3
Varani, G.4
-
9
-
-
0029400480
-
NMRPipe: a multidimensional spectral processing system based on UNIX pipes
-
Delaglio F., Grzesiek S., Vuister G.W., Zhu G., Pfeifer J., and Bax A. NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J. Biomol. NMR 6 (1995) 277-293
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 277-293
-
-
Delaglio, F.1
Grzesiek, S.2
Vuister, G.W.3
Zhu, G.4
Pfeifer, J.5
Bax, A.6
-
10
-
-
3042655537
-
Computational design of a biologically active enzyme
-
Dwyer M.A., Looger L.L., and Hellinga H.W. Computational design of a biologically active enzyme. Science 304 (2004) 1967-1971
-
(2004)
Science
, vol.304
, pp. 1967-1971
-
-
Dwyer, M.A.1
Looger, L.L.2
Hellinga, H.W.3
-
11
-
-
0028282555
-
15N NMR relaxation
-
15N NMR relaxation. Biochemistry 33 (1994) 5984-6003
-
(1994)
Biochemistry
, vol.33
, pp. 5984-6003
-
-
Farrow, N.A.1
Muhandiram, R.2
Singer, A.U.3
Pascal, S.M.4
Kay, C.M.5
Gish, G.6
Shoelson, S.E.7
Pawson, T.8
Forman-Kay, J.D.9
Kay, L.E.10
-
12
-
-
33646377824
-
-
Goddard, T.D., and Kneller, D.G. (2006). Sparky 3 (http://www.cgl.ucsf.edu/home/sparky/).
-
-
-
-
13
-
-
4344698912
-
Automated NMR protein structure calculation
-
Güntert P. Automated NMR protein structure calculation. Prog. Nuclear Magn. Res Spectrosc. 43 (2003) 105-125
-
(2003)
Prog. Nuclear Magn. Res Spectrosc.
, vol.43
, pp. 105-125
-
-
Güntert, P.1
-
14
-
-
0032553587
-
High-resolution protein design with backbone freedom
-
Harbury P.B., Plecs J.J., Tidor B., Alber T., and Kim P.S. High-resolution protein design with backbone freedom. Science 282 (1998) 1462-1467
-
(1998)
Science
, vol.282
, pp. 1462-1467
-
-
Harbury, P.B.1
Plecs, J.J.2
Tidor, B.3
Alber, T.4
Kim, P.S.5
-
15
-
-
0037217406
-
Automated design of specificity in molecular recognition
-
Havranek J.J., and Harbury P.B. Automated design of specificity in molecular recognition. Nat. Struct. Biol. 10 (2003) 45-52
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 45-52
-
-
Havranek, J.J.1
Harbury, P.B.2
-
16
-
-
0033566738
-
Solution structure and dynamics of a designed hydrophobic core variant of ubiquitin
-
Johnson E.C., Lazar G.A., Desjarlais J.R., and Handel T.M. Solution structure and dynamics of a designed hydrophobic core variant of ubiquitin. Structure 7 (1999) 967-976
-
(1999)
Structure
, vol.7
, pp. 967-976
-
-
Johnson, E.C.1
Lazar, G.A.2
Desjarlais, J.R.3
Handel, T.M.4
-
18
-
-
0025761656
-
RNA recognition: towards identifying determinants of specificity
-
Kenan D.J., Query C.C., and Keene J.D. RNA recognition: towards identifying determinants of specificity. Trends Biochem. Sci. 16 (1991) 214-220
-
(1991)
Trends Biochem. Sci.
, vol.16
, pp. 214-220
-
-
Kenan, D.J.1
Query, C.C.2
Keene, J.D.3
-
19
-
-
0029881007
-
MOLMOL: a program for display and analysis of macromolecular structures
-
Koradi R., Billeter M., and Wuthrich K. MOLMOL: a program for display and analysis of macromolecular structures. J. Mol. Graph. 14 (1996) 51-55
-
(1996)
J. Mol. Graph.
, vol.14
, pp. 51-55
-
-
Koradi, R.1
Billeter, M.2
Wuthrich, K.3
-
20
-
-
0345306764
-
Design of a novel globular protein fold with atomic-level accuracy
-
Kuhlman B., Dantas G., Ireton G.C., Varani G., Stoddard B.L., and Baker D. Design of a novel globular protein fold with atomic-level accuracy. Science 302 (2003) 1364-1368
-
(2003)
Science
, vol.302
, pp. 1364-1368
-
-
Kuhlman, B.1
Dantas, G.2
Ireton, G.C.3
Varani, G.4
Stoddard, B.L.5
Baker, D.6
-
21
-
-
0035942731
-
Microscopic origin of entropy, heat capacity and the glass transition in proteins
-
Lee A.L., and Wand A.J. Microscopic origin of entropy, heat capacity and the glass transition in proteins. Nature 411 (2001) 501-504
-
(2001)
Nature
, vol.411
, pp. 501-504
-
-
Lee, A.L.1
Wand, A.J.2
-
22
-
-
33646719091
-
Model-free approach to the interpretation of nuclear magnetic relaxation in macromolecules. 1. Theory and range of validity
-
Lipari G., and Szabo A. Model-free approach to the interpretation of nuclear magnetic relaxation in macromolecules. 1. Theory and range of validity. J. Am. Chem. Soc. 104 (1982) 4546-4559
-
(1982)
J. Am. Chem. Soc.
, vol.104
, pp. 4546-4559
-
-
Lipari, G.1
Szabo, A.2
-
23
-
-
33845553743
-
Model-free approach to the interpretation of nuclear magnetic relaxation in macromolecules. 2. Analysis of experimental results
-
Lipari G., and Szabo A. Model-free approach to the interpretation of nuclear magnetic relaxation in macromolecules. 2. Analysis of experimental results. J. Am. Chem. Soc. 104 (1982) 4559-4570
-
(1982)
J. Am. Chem. Soc.
, vol.104
, pp. 4559-4570
-
-
Lipari, G.1
Szabo, A.2
-
24
-
-
0038752617
-
Computational design of receptor and sensor proteins with novel functions
-
Looger L.L., Dwyer M.A., Smith J.J., and Hellinga H.W. Computational design of receptor and sensor proteins with novel functions. Nature 423 (2003) 132-133
-
(2003)
Nature
, vol.423
, pp. 132-133
-
-
Looger, L.L.1
Dwyer, M.A.2
Smith, J.J.3
Hellinga, H.W.4
-
25
-
-
0033544709
-
Changes in side chain and backbone dynamics identify determinants of specificity in RNA recognition by human U1A protein
-
Mittermaier A., Varani L., Muhandiram D.R., Kay L.E., and Varani G. Changes in side chain and backbone dynamics identify determinants of specificity in RNA recognition by human U1A protein. J. Mol. Biol. 294 (1999) 967-979
-
(1999)
J. Mol. Biol.
, vol.294
, pp. 967-979
-
-
Mittermaier, A.1
Varani, L.2
Muhandiram, D.R.3
Kay, L.E.4
Varani, G.5
-
26
-
-
0043238060
-
Repacking the core of T4 lysozyme by automated design
-
Mooers B.H.M., Datta D., Baase W.A., Zollars E.S., Mayo S.L., and Matthews B.W. Repacking the core of T4 lysozyme by automated design. J. Mol. Biol. 332 (2003) 741-756
-
(2003)
J. Mol. Biol.
, vol.332
, pp. 741-756
-
-
Mooers, B.H.M.1
Datta, D.2
Baase, W.A.3
Zollars, E.S.4
Mayo, S.L.5
Matthews, B.W.6
-
27
-
-
0025221731
-
Structure of the RNA-binding domain of the U1 small nuclear ribonucleoprotein A
-
Nagai K., Oubridge C., Jessen T.H., Li J., and Evans P.R. Structure of the RNA-binding domain of the U1 small nuclear ribonucleoprotein A. Nature 348 (1990) 515-520
-
(1990)
Nature
, vol.348
, pp. 515-520
-
-
Nagai, K.1
Oubridge, C.2
Jessen, T.H.3
Li, J.4
Evans, P.R.5
-
28
-
-
0028990057
-
The RNP domain: a sequence-specific RNA-binding domain involved in processing and transport of RNA
-
Nagai K., Oubridge C., Ito N., Avis J., and Evans P. The RNP domain: a sequence-specific RNA-binding domain involved in processing and transport of RNA. Trends Biochem. Sci. 20 (1995) 235-240
-
(1995)
Trends Biochem. Sci.
, vol.20
, pp. 235-240
-
-
Nagai, K.1
Oubridge, C.2
Ito, N.3
Avis, J.4
Evans, P.5
-
29
-
-
0028004607
-
Crystal structure at 1.92 Å resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin
-
Oubridge C., Ito N., Evans P.R., Teo C.-H., and Nagai K. Crystal structure at 1.92 Å resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin. Nature 372 (1994) 432-438
-
(1994)
Nature
, vol.372
, pp. 432-438
-
-
Oubridge, C.1
Ito, N.2
Evans, P.R.3
Teo, C.-H.4
Nagai, K.5
-
30
-
-
0035782661
-
Protein design-where we were, where we are, where we're going
-
Pokala N., and Handel T.M. Protein design-where we were, where we are, where we're going. J. Struct. Biol. 134 (2001) 269-281
-
(2001)
J. Struct. Biol.
, vol.134
, pp. 269-281
-
-
Pokala, N.1
Handel, T.M.2
-
31
-
-
0347722841
-
Heteronuclear multidimensional NMR experiments for the structure determination of proteins in solution employing pulsed field gradients
-
Sattler M., Schleucher J., and Griesinger C. Heteronuclear multidimensional NMR experiments for the structure determination of proteins in solution employing pulsed field gradients. Prog. NMR Spectrosc. 34 (1999) 93-158
-
(1999)
Prog. NMR Spectrosc.
, vol.34
, pp. 93-158
-
-
Sattler, M.1
Schleucher, J.2
Griesinger, C.3
-
32
-
-
1842635571
-
Characterization of the folding energy landscapes of computer generated proteins suggests high folding free energy barriers and cooperativity may be consequences of natural selection
-
Scalley-Kim M., and Baker D. Characterization of the folding energy landscapes of computer generated proteins suggests high folding free energy barriers and cooperativity may be consequences of natural selection. J. Mol. Biol. 338 (2004) 573-583
-
(2004)
J. Mol. Biol.
, vol.338
, pp. 573-583
-
-
Scalley-Kim, M.1
Baker, D.2
-
33
-
-
0344392711
-
Exploring the origins of binding specificity through the computational redesign of calmodulin
-
Shifman J.M., and Mayo S.L. Exploring the origins of binding specificity through the computational redesign of calmodulin. Proc. Natl. Acad. Sci. USA 100 (2003) 13274-13279
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 13274-13279
-
-
Shifman, J.M.1
Mayo, S.L.2
-
34
-
-
0031860374
-
RNA recognition by RNP proteins during RNA processing and maturation
-
Varani G., and Nagai K. RNA recognition by RNP proteins during RNA processing and maturation. Annu. Rev. Biophys. Biomol. Struct. 27 (1998) 407-445
-
(1998)
Annu. Rev. Biophys. Biomol. Struct.
, vol.27
, pp. 407-445
-
-
Varani, G.1
Nagai, K.2
-
35
-
-
0034070741
-
The NMR structure of the 38 kDa RNA-protein complex reveals the basis for cooperativity in inhibition of polyadenylation by human U1A protein
-
Varani L., Gunderson S., Kay L.E., Neuhaus D., Mattaj I., and Varani G. The NMR structure of the 38 kDa RNA-protein complex reveals the basis for cooperativity in inhibition of polyadenylation by human U1A protein. Nat. Struct. Biol. 7 (2000) 329-335
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 329-335
-
-
Varani, L.1
Gunderson, S.2
Kay, L.E.3
Neuhaus, D.4
Mattaj, I.5
Varani, G.6
-
36
-
-
0033545937
-
Solution structure and dynamics of a de novo designed three-helix bundle protein
-
Walsh S.T.R., Cheng H., Bryson J.W., Roder H., and DeGrado W.F. Solution structure and dynamics of a de novo designed three-helix bundle protein. Proc. Natl. Acad. Sci. USA 96 (1999) 5486-5491
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 5486-5491
-
-
Walsh, S.T.R.1
Cheng, H.2
Bryson, J.W.3
Roder, H.4
DeGrado, W.F.5
-
37
-
-
0035859875
-
Dynamics of a de novo deisgned three-helix bundle protein studied by 15N, 13C and 2D NMR relaxation methods
-
Walsh S.T.R., Lee A.L., DeGrado W.F., and Wand A.J. Dynamics of a de novo deisgned three-helix bundle protein studied by 15N, 13C and 2D NMR relaxation methods. Biochemistry 40 (2001) 9560-9569
-
(2001)
Biochemistry
, vol.40
, pp. 9560-9569
-
-
Walsh, S.T.R.1
Lee, A.L.2
DeGrado, W.F.3
Wand, A.J.4
-
38
-
-
0034760077
-
Dynamic activation of protein function: a view emerging from NMR spectroscopy
-
Wand A.J. Dynamic activation of protein function: a view emerging from NMR spectroscopy. Nat. Struct. Biol. 8 (2001) 926-931
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 926-931
-
-
Wand, A.J.1
|