RNA recognition by RNP proteins during RNA processing

Annual Review of Biophysics and Biomolecular Structure

Volumn 27, Issue , 1998, Pages 407-445

  Varani, Gabriele ^a   Nagai, Kiyoshi ^a  

^a MRC LABORATORY OF MOLECULAR BIOLOGY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

CRYSTALLOGRAPHY; HUMAN; NONHUMAN; NUCLEAR MAGNETIC RESONANCE; PRIORITY JOURNAL; PROTEIN RNA BINDING; REVIEW; RNA ANALYSIS; RNA PROCESSING; RNA STRUCTURE;

ALTERNATIVE SPLICING; AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; BINDING SITES; GENE EXPRESSION REGULATION; HUMANS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; PROTEIN BIOSYNTHESIS; PROTEIN CONFORMATION; PROTEINS; RIBONUCLEOPROTEINS; RNA; RNA PROCESSING, POST-TRANSCRIPTIONAL; RNA, MESSENGER; TRANSCRIPTION, GENETIC;

EUKARYOTA;

EID: 0031860374     PISSN: 10568700     EISSN: None     Source Type: Book Series    
DOI: 10.1146/annurev.biophys.27.1.407     Document Type: Review

References (21)

1. Abdul-Manam N, O'Malley SM, Williams KR. 1996. Origins of the binding specificity of the Al heterogeneous ribonucleoprotein. Biochemistry 35:3545-54
2. Adam SA, Nakagawa T, Swanson MS, Woodruff TK, Dreyfuss G. 1986. mRNA polyadenylate-binding protein: gene isolation and sequencing and identification of a ribonucleoprotein consensus sequence. Mol. Cell. Biol. 6:2932-43
3. Allain FH-T, Gubser CC, Howe PWA, Nagai K, Neuhaus D, Varani G. 1996. Specificity of ribonucleoprotein interaction determined by RNA folding during complex formation. Nature 380:646-50
4. Allain FH-T, Howe PWA, Neuhaus D, Varani G. 1997. Structural basis of the RNA binding specificity of human U1A protein. EMBO J. 16:5764-74
5. Amrani N, Minet M, Le Gouar M, Lacroute F, Wyers F. 1997. Yeast Pab1 interacts with RNA15 and participates in the control of the poly(A) tail length in vitro. Mol. Cell. Biol. 17:3694-3701
6. Amrein H, Hedley ML, Maniatis T. 1994. The role of specific protein-RNA and protein-protein interactions in positive and negative control of pre-mRNA splicing by Transformer 2. Cell 76:735-46
7. Avis J, Allain FH-T, Howe PWA, Varani G, Neuhaus D, Nagai K. 1996. Solution structure of the N-terminal RNP domain of U1A protein: the role of C-terminal residues in structure stability and RNA binding. J. Mol. Biol. 257:398-411
8. Beelman CA, Parker R. 1995. Degradation of mRNA in eukaryotes. Cell 81:179-83
9. Bentley RC, Keene JD. 1991. Recognition of U1 and U2 small nuclear RNAs can be altered by a 5-amino-acid segment in the U2 small nuclear ribonucleoprotein particle (snRNP) B" protein and through interactions with U2 snRNP-A' protein. Mol. Cell. Biol. 11:1829-39
10. Biamonti G, Riva S. 1994. New insights into the auxiliary domains of eukaryotic RNA binding proteins. FEBS Lett. 340:1-8
11. Bimey E, Kumar S, Krainer AR. 1993. Analysis of the RNA-recognition motif and RS and RGG domains: conservation in metazoan pre-mRNA splicing factors. Nucleic Acids Res. 21:5803-16
12. Bochkarev A, Pfuetzner RA, Edwards AM, Frappier L. 1997. Structure of the single-stranded-DNA-binding domain of replication protein A bound to DNA. Nature 385:176-81
13. Boelens WC, Jansen EJR, van Venrooij WJ, Stripecke R, Mattaj IW, Gunderson SI. 1993. The human U1 snRNP-specific U1A protein inhibits polyadenylation of its own pre-mRNA. Cell 72:881-92
14. Burd CG, Dreyfuss G. 1994. Conserved structures and diversity of functions of RNA-binding proteins. Science 265:615-21
15. Burd CG, Dreyfuss G. 1994. RNA binding specificity of hnRNP A1: significance of hnRNP A1 high-affinity binding sites in pre-mRNA splicing. EMBO J. 13:1197-1204
16. Burd CG, Matunis EL, Dreyfuss G. 1991. The multiple RNA-binding domains of the mRNA poly(A)-binding protein have different RNA-binding activities. Mol. Cell. Biol. 11:3419-24
17. Bycroft M, Grünert S, Murzin AG, Proctor M, St Johnston D. 1995. NMR solution structure of a dsRNA binding domain from Drosophila staufen protein reveals homology to the N-terminal domain of ribosomal protein S5. EMBO J. 14:3563-71
18. Cáceres JF, Krainer AR. 1993. Functional analysis of pre-mRNA splicing factor ASF/SF2 structural domains. EMBO J. 12:4715-26
19. Cáceres JF, Stamm S, Helfman DM, Krainer AR. 1994. Regulation of alternative splicing in vivo by overexpression of antagonistic splicing factors. Science 265:1706-9
20. Caponigro G, Parker R. 1995. Multiple functions for the poly(A)-binding protein in mRNA decapping and deadenylation in yeast. Genes Dev. 9:2421-32
21. Caprara MG, Mohr G, Lambowitz AM. 1996. A tyrosyl-tRNA synthetase protein induces tertiary folding of the group I intron catalytic core. J. Mol. Biol. 257:512-31