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Volumn 7, Issue , 2006, Pages

Profiling alternatively spliced mRNA isoforms for prostate cancer classification

Author keywords

[No Author keywords available]

Indexed keywords

CANCER CLASSIFICATION; CLASSIFICATION PERFORMANCE; CLINICAL DIAGNOSIS; DIFFERENTIAL EXPRESSIONS; FALSE DISCOVERY RATE; MRNA ABUNDANCES; PROSTATE CANCERS; VARIABLE SELECTION METHODS;

EID: 33646364024     PISSN: 14712105     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-7-202     Document Type: Article
Times cited : (88)

References (55)
  • 1
    • 0034767957 scopus 로고    scopus 로고
    • Cancer burden in the year 2000. The global picture
    • Parkin DM, Bray FI, Devesa SS: Cancer burden in the year 2000. The global picture. Eur J Cancer 2001, 37(Supplement 8):4-66.
    • (2001) Eur J Cancer , vol.37 , Issue.SUPPL. 8 , pp. 4-66
    • Parkin, D.M.1    Bray, F.I.2    Devesa, S.S.3
  • 4
    • 0036559864 scopus 로고    scopus 로고
    • A history of prostate cancer treatment
    • Denmeade SR, Isaacs JT. A history of prostate cancer treatment. Nat Rev Cancer 2002, 2:389-3396.
    • (2002) Nat Rev Cancer , vol.2 , pp. 389-3396
    • Denmeade, S.R.1    Isaacs, J.T.2
  • 6
    • 0035496220 scopus 로고    scopus 로고
    • The development of androgen-independent prostate cancer
    • Feldman BJ, Feldman D: The development of androgen-independent prostate cancer. Nat Rev Cancer 2001, 1:34-45.
    • (2001) Nat Rev Cancer , vol.1 , pp. 34-45
    • Feldman, B.J.1    Feldman, D.2
  • 15
    • 6944244084 scopus 로고    scopus 로고
    • A module map showing conditional activity of expression modules in cancer
    • Segal E, Friedman N, Koller D, Regev A: A module map showing conditional activity of expression modules in cancer. Nat Genet 2004, 36(10):1090-1098.
    • (2004) Nat Genet , vol.36 , Issue.10 , pp. 1090-1098
    • Segal, E.1    Friedman, N.2    Koller, D.3    Regev, A.4
  • 18
    • 17144444034 scopus 로고    scopus 로고
    • Transcriptional programs activated by exposure of human prostate cancer cells to androgen
    • research0032.1 - research0032.12
    • DePrimo S, Diehn M, Nelson J, Reiter R, Matese J, Fero M, Tibshirani R, Brown P, Brooks J: Transcriptional programs activated by exposure of human prostate cancer cells to androgen. Genome Biol 2002,3(7):research0032.1 - research0032.12.
    • (2002) Genome Biol , vol.3 , Issue.7
    • DePrimo, S.1    Diehn, M.2    Nelson, J.3    Reiter, R.4    Matese, J.5    Fero, M.6    Tibshirani, R.7    Brown, P.8    Brooks, J.9
  • 20
    • 0035036534 scopus 로고    scopus 로고
    • Gene Structure Prediction and Alternative Splicing Analysis Using Genomically Aligned ESTs
    • Kan Z, Rouchka EC, Gish WR, States DJ: Gene Structure Prediction and Alternative Splicing Analysis Using Genomically Aligned ESTs. Genome Res 2001, 11(5):889-900.
    • (2001) Genome Res , vol.11 , Issue.5 , pp. 889-900
    • Kan, Z.1    Rouchka, E.C.2    Gish, W.R.3    States, D.J.4
  • 21
    • 0036207384 scopus 로고    scopus 로고
    • Listening to silence and understanding nonsense: Exonic mutations that affect splicing
    • Cartegni L, Chew SL, Krainer AR: Listening to silence and understanding nonsense: exonic mutations that affect splicing. Nat Rev Genet 2002, 3:285-298.
    • (2002) Nat Rev Genet , vol.3 , pp. 285-298
    • Cartegni, L.1    Chew, S.L.2    Krainer, A.R.3
  • 22
    • 0026794668 scopus 로고
    • The mutational spectrum of single base-pair substitutions in mRNA splice junctions of human genes: Causes and consequences
    • Krawczak M, Reiss J, Cooper DN: The mutational spectrum of single base-pair substitutions in mRNA splice junctions of human genes: causes and consequences. Hum Genet 1992, 90(1-2):41-54.
    • (1992) Hum Genet , vol.90 , Issue.1-2 , pp. 41-54
    • Krawczak, M.1    Reiss, J.2    Cooper, D.N.3
  • 23
    • 3042642783 scopus 로고    scopus 로고
    • Splice variants as cancer biomarkers
    • Brinkman BMN: Splice variants as cancer biomarkers. Clin Biochem 2004, 37(7):584-594.
    • (2004) Clin Biochem , vol.37 , Issue.7 , pp. 584-594
    • Brinkman, B.M.N.1
  • 28
    • 0037012922 scopus 로고    scopus 로고
    • Genomewide Analysis of mRNA Processing in Yeast Using Splicing-Specific Microarrays
    • Clark TA, Sugnet CW, Ares MJ: Genomewide Analysis of mRNA Processing in Yeast Using Splicing-Specific Microarrays. Science 2002, 296(5569):907-910.
    • (2002) Science , vol.296 , Issue.5569 , pp. 907-910
    • Clark, T.A.1    Sugnet, C.W.2    Ares, M.J.3
  • 30
    • 0032441150 scopus 로고    scopus 로고
    • Cluster analysis and display of genome-wide expression patterns
    • Eisen MB, Spellman PT, Brown PO, Botstein D: Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci USA 1998, 95(25):14863-14868.
    • (1998) Proc Natl Acad Sci USA , vol.95 , Issue.25 , pp. 14863-14868
    • Eisen, M.B.1    Spellman, P.T.2    Brown, P.O.3    Botstein, D.4
  • 31
    • 84874660677 scopus 로고    scopus 로고
    • Cluster and TreeView
    • Cluster and TreeView [http://rana.lbl.gov]
  • 32
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • Storey JD, Tibshirani R: Statistical significance for genomewide studies. Proc Natl Acad Sci USA 2003, 100(16):9440-9445.
    • (2003) Proc Natl Acad Sci USA , vol.100 , Issue.16 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 33
    • 5044235577 scopus 로고    scopus 로고
    • The role of tau (MAPT) in frontotemporal dementia and related tauopathies
    • Rademakers R, Cruts M, van Broechkoven C: The role of tau (MAPT) in frontotemporal dementia and related tauopathies. Hum Mutat 2004, 24(4):277-295.
    • (2004) Hum Mutat , vol.24 , Issue.4 , pp. 277-295
    • Rademakers, R.1    Cruts, M.2    van Broechkoven, C.3
  • 36
    • 0042242582 scopus 로고    scopus 로고
    • ESEfinder: A web resource to identify exonic splicing enhancers
    • Cartegni L, Wang J, Zhu Z, Zhang MQ, Krainer AR: ESEfinder: a web resource to identify exonic splicing enhancers. Nucl Acids Res 2003, 31(13):3568-3571
    • (2003) Nucl Acids Res , vol.31 , Issue.13 , pp. 3568-3571
    • Cartegni, L.1    Wang, J.2    Zhu, Z.3    Zhang, M.Q.4    Krainer, A.R.5
  • 38
    • 0036161259 scopus 로고    scopus 로고
    • Gene selection for cancer classification using support vector machines
    • Guyon I, Weston J, Barnhill S, Vapnik V: Gene selection for cancer classification using support vector machines. Machine Learning 2002, 46(1-3):389-422.
    • (2002) Machine Learning , vol.46 , Issue.1-3 , pp. 389-422
    • Guyon, I.1    Weston, J.2    Barnhill, S.3    Vapnik, V.4
  • 39
    • 0037076322 scopus 로고    scopus 로고
    • Selection bias in gene extraction on the basis of microarray gene-expression data
    • Ambroise C, McLachlan GJ: Selection bias in gene extraction on the basis of microarray gene-expression data. Proc Natl Acad Sci USA 2002, 99(10):6562-6566.
    • (2002) Proc Natl Acad Sci USA , vol.99 , Issue.10 , pp. 6562-6566
    • Ambroise, C.1    McLachlan, G.J.2
  • 42
    • 14244263334 scopus 로고    scopus 로고
    • Alternative Splicing Microarrays Reveal Functional Expression of Neuron-specific Regulators in Hodgkin Lymphoma Cells
    • Relogio A, Ben-Dov C, Baum M, Ruggiu M, Gemund C, Benes V, Darnell RB, Valcarcel J: Alternative Splicing Microarrays Reveal Functional Expression of Neuron-specific Regulators in Hodgkin Lymphoma Cells. J Biol Chem 2005, 280(6):4779-4784.
    • (2005) J Biol Chem , vol.280 , Issue.6 , pp. 4779-4784
    • Relogio, A.1    Ben-Dov, C.2    Baum, M.3    Ruggiu, M.4    Gemund, C.5    Benes, V.6    Darnell, R.B.7    Valcarcel, J.8
  • 44
    • 26444502673 scopus 로고    scopus 로고
    • A microarray configuration to quantify expression levels and relative abundance of splice variants
    • Fehlbaum P, Guihal C, Bracco L, Cochet O: A microarray configuration to quantify expression levels and relative abundance of splice variants. Nucl Acids Res 2005, 33(5):e47.
    • (2005) Nucl Acids Res , vol.33 , Issue.5
    • Fehlbaum, P.1    Guihal, C.2    Bracco, L.3    Cochet, O.4
  • 45
    • 4344641894 scopus 로고    scopus 로고
    • Analysis of alternative splicing with microarrays: Successes and challenges
    • Lee C, Roy M: Analysis of alternative splicing with microarrays: successes and challenges. Genome Biol 2004, 5(7):231.
    • (2004) Genome Biol , vol.5 , Issue.7 , pp. 231
    • Lee, C.1    Roy, M.2
  • 47
    • 0346492952 scopus 로고    scopus 로고
    • Paraneoplastic neurological degenerations: Keys to tumour immunity
    • Albert ML, Darnell RB: Paraneoplastic neurological degenerations: keys to tumour immunity. Nat Rev Cancer 2004, 4(1):36-44.
    • (2004) Nat Rev Cancer , vol.4 , Issue.1 , pp. 36-44
    • Albert, M.L.1    Darnell, R.B.2
  • 48
    • 84874666929 scopus 로고    scopus 로고
    • MAASE
    • MAASE [http://maase.genomics.purdue.edu]
  • 50
    • 0004236492 scopus 로고    scopus 로고
    • Matrix Computation
    • Johns Hopkins Univ. Press, Baltimore
    • Golub GH, Van Loan CF: Matrix Computation. Johns Hopkins Univ. Press, Baltimore; 1996.
    • (1996)
    • Golub, G.H.1    Van Loan, C.F.2
  • 51
    • 0034730140 scopus 로고    scopus 로고
    • Singular value decomposition for genome-wide expression data processing and modeling
    • Alter O, Brown PO, Botstein D: Singular value decomposition for genome-wide expression data processing and modeling. Proc Natl Acad Sci USA 2000, 97(18):10101-10106.
    • (2000) Proc Natl Acad Sci USA , vol.97 , Issue.18 , pp. 10101-10106
    • Alter, O.1    Brown, P.O.2    Botstein, D.3
  • 52
    • 0034682504 scopus 로고    scopus 로고
    • Fundamental patterns underlying gene expression profiles: Simplicity from complexity
    • Holter NS, Mitra M, Maritan A, Cieplak M, Banavar JR, Fedoroff NV: Fundamental patterns underlying gene expression profiles: Simplicity from complexity. PNAS 2000, 97(15):8409-8414.
    • (2000) PNAS , vol.97 , Issue.15 , pp. 8409-8414
    • Holter, N.S.1    Mitra, M.2    Maritan, A.3    Cieplak, M.4    Banavar, J.R.5    Fedoroff, N.V.6
  • 53
    • 0344824414 scopus 로고    scopus 로고
    • Robust singular value decomposition analysis of microarray data
    • Liu L, Hawkins DM, Ghosh S, Young SS: Robust singular value decomposition analysis of microarray data. PNAS 2003, 100(23):13167-13172.
    • (2003) PNAS , vol.100 , Issue.23 , pp. 13167-13172
    • Liu, L.1    Hawkins, D.M.2    Ghosh, S.3    Young, S.S.4
  • 54
    • 0035184851 scopus 로고    scopus 로고
    • Biomarker Identification by Feature Wrappers
    • Xiong M, Fang X, Zhao J: Biomarker Identification by Feature Wrappers. Genome Res 2001, 11(11):1878-1887.
    • (2001) Genome Res , vol.11 , Issue.11 , pp. 1878-1887
    • Xiong, M.1    Fang, X.2    Zhao, J.3
  • 55
    • 0000913324 scopus 로고    scopus 로고
    • SVMTorch: Support Vector Machines for Large-Scale Regression Problems
    • Collobert R, Bengio S: SVMTorch: Support Vector Machines for Large-Scale Regression Problems. J Machine Learning Res 2001, 1:143-160.
    • (2001) J Machine Learning Res , vol.1 , pp. 143-160
    • Collobert, R.1    Bengio, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.