메뉴 건너뛰기




Volumn 41, Issue 1, 2000, Pages 1-7

Building-block approach for determining low-frequency normal modes of macromolecules

Author keywords

B factors; Collective motion; Conformational change; Rigid bodies; Rotation translation; RTB method

Indexed keywords

ADENYLATE KINASE; ALCOHOL DEHYDROGENASE; CITRATE SYNTHASE; ENOLASE; PROTEINASE; TRIACYLGLYCEROL LIPASE; VIRUS PROTEIN;

EID: 0034308140     PISSN: 08873585     EISSN: None     Source Type: Journal    
DOI: 10.1002/1097-0134(20001001)41:1<1::AID-PROT10>3.0.CO;2-P     Document Type: Article
Times cited : (451)

References (36)
  • 4
    • 0021701376 scopus 로고
    • Variational calculation of the normal modes of a large macromolecule: Methods and some initial results
    • (1984) Biopolymers , vol.23 , pp. 2943-2949
    • Harrison, W.1
  • 6
    • 0025066772 scopus 로고
    • Normal mode analysis of human lysozyme: Study of the relative motion of the two domains and characterization of the harmonic motion
    • (1990) Proteins , vol.8 , pp. 258-279
    • Gibrat, J.F.1    Go, N.2
  • 7
    • 0025109873 scopus 로고
    • Deoxymyoglobin studied by the conformational normal mode analysis: I. Dynamics of globin and the heme-globin interaction
    • (1990) J Mol Biol , vol.216 , pp. 95-109
    • Seno, Y.1    Go, N.2
  • 8
    • 0025163070 scopus 로고
    • Deoxymyoglobin studied by the conformational normal mode analysis: II. The conformational change upon oxygenation
    • (1990) J Mol Biol , vol.216 , pp. 111-126
    • Seno, Y.1    Go, N.2
  • 10
    • 0029374782 scopus 로고
    • Computation of low-frequency normal modes in macromolecules: Improvements to the method of diagonalization in a mixed basis and application to hemoglobin
    • (1995) Comput Chem , vol.19 , pp. 241-246
    • Perahia, D.1    Mouawad, L.2
  • 11
    • 0030888546 scopus 로고    scopus 로고
    • Model-free methods of analyzing domain motions in proteins from simulation: A comparison of normal mode analysis and molecular dynamics simulation of lysozyme
    • (1997) Proteins , vol.27 , pp. 425-437
    • Hayward, S.1    Kitao, A.2    Berendsen, H.J.C.3
  • 12
    • 0032533790 scopus 로고    scopus 로고
    • Analysis of domain motions by approximate normal mode calculations
    • (1998) Proteins , vol.33 , pp. 417-429
    • Hinsen, K.1
  • 15
    • 4243716593 scopus 로고
    • E'tude theorique des mouvements internes de grande amplitude de la decaalanine et du fragment C-terminal de la proteine ribosomale. Ph.D. thesis, Orsay (France)
    • (1990)
    • Sanejouand, Y.H.1
  • 19
    • 0027576952 scopus 로고
    • DIMB: Diagonalization in a mixed basis, a method to compute low-frequency normal modes for large macro-molecules
    • (1993) Biopolymers , vol.33 , pp. 569-611
    • Mouawad, L.1    Perahia, D.2
  • 24
    • 0008264445 scopus 로고
    • Classical mechanics. Reading, Mass: Addison Wesley
    • (1950)
    • Goldstein, H.1
  • 29
    • 0030700726 scopus 로고    scopus 로고
    • Ligand-induced conformational changes in ras p21: A normal mode and energy minimization analysis
    • (1997) J Mol Biol , vol.274 , pp. 114-131
    • Ma, J.1    Karplus, M.2
  • 32
    • 0029791008 scopus 로고    scopus 로고
    • Normal-mode analysis suggests important flexibility between the two N-terminal domains of CD4 and supports the hypothesis of a conformational change in CD4 upon HIV binding
    • (1996) Protein Eng , vol.9 , pp. 671-677
    • Sanejouand, Y.H.1
  • 33
  • 36
    • 0000197372 scopus 로고    scopus 로고
    • Large amplitude elastic motions in proteins from asingle-parameter, atomic analysis
    • (1996) Phys Rev Lett , vol.77 , pp. 1905-1908
    • Tirion, M.M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.