Cooperative fluctuations and subunit communication in tryptophan synthase

Biochemistry

Volumn 38, Issue 12, 1999, Pages 3478-3490

  Bahar, Ivet ^a,b   Jernigan, Robert L ^a  

^a NATIONAL CANCER INSTITUTE   (United States)

^b BOGAZICI UNIVERSITY   (Turkey)

Author keywords

[No Author keywords available]

Indexed keywords

TRYPTOPHAN; TRYPTOPHAN SYNTHASE;

AMINO ACID SYNTHESIS; ARTICLE; BINDING SITE; ENZYME ACTIVITY; ENZYME CONFORMATION; ENZYME STRUCTURE; ENZYME SUBUNIT; KINETICS; LIGAND BINDING; MOLECULAR INTERACTION; NONHUMAN; PRIORITY JOURNAL; SITE DIRECTED MUTAGENESIS; X RAY CRYSTALLOGRAPHY;

ALLOSTERIC REGULATION; BINDING SITES; CATALYSIS; CRYSTALLOGRAPHY, X-RAY; LIGANDS; MODELS, MOLECULAR; PROTEIN CONFORMATION; PROTEIN FOLDING; SALMONELLA TYPHIMURIUM; SUBSTRATE SPECIFICITY; TRYPTOPHAN SYNTHASE;

EID: 0033596908     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi982697v     Document Type: Article

References (47)

1. Ahmed, S. A., Miles, E. W., and Davies, D. R. (1985) J. Biol. Chem. 260, 3716-3718.
2. Hyde, C. C., Ahmed, S. A., Padlan, E. A., Miles, E. W., and Davies, D. R. (1988) J. Biol. Chem. 263, 17857-17871.
3. Hyde, C. C., and Miles, E. W. (1990) Biotechnology 8, 27-32.
4. Rhee, S., Parris, K. D., Ahmed, S. A., Miles, E. W., and Davies, D. R. (1996) Biochemistry 35, 4211-4221.
5. Rhee, S., Parris, K. D., Hyde, C. C., Ahmed, S. A., Miles, E. W., and Davies, D. R. (1997) Biochemistry 36, 7664-7680.
6. Rhee, S., Miles, E. W., and Davies, D. (1998) J. Biol. Chem. 273, 8553-8555.
7. Schneider, T. R., Gerhardt, E., Liang, P.-H., Anderson, K. S., and Schlichting, I. (1998) Biochemistry 37, 5394-5406.
8. Kawasaki, H., Bauerle, R., Zon, G., Ahmed, S. A., and Miles, E. W. (1987) J. Biol. Chem. 262, 10678-10683.
9. Nagata, S., Hyde, C. C., and Miles, E. W. (1989) J. Biol. Chem. 265, 7987-7993.
10. Brzovic, P. S., Kayastha, A. M., Miles, E. W., and Dunn, M. F. (1992) Biochemistry 31, 1180-1190.
11. Brzovic, P. S., Haig, C. C., Miles, E. W., and Dunn, M. F. (1993) Biochemistry 32, 10404-10413.
12. Rowlett, R., Yang, L., Ahmed, S. A., McPhie, P., Jhee, K., and Miles, E. W. (1998) Biochemistry 37, 2961-2968.
13. Dunn, M. F., Aguilar, V., Brzovic, P. S., Drewe, W. F. J., Houben, K. F., Leja, C. A., and Roy, M. (1990) Biochemistry 29, 8598-8607.
14. Anderson, K. S., Miles, E. W., and Johnson, K. A. (1991) J. Biol. Chem. 266, 8020-8033.
15. Lane, A. N., and Kirschner, K. (1991) Biochemistry 30, 479-484.
16. Brzovic, P. S., Sawa, Y., Hyde, C. C., Miles, E. W., and Dunn, M. F. (1992) J. Biol. Chem. 267, 13028-13038.
17. Peracchi, A., Bettati, S., Mozzarelli, A., Rossi, G. L., Miles, E. W., and Dunn, M. F. (1996) Biochemistry 35, 1872-1879.
18. 2 Multienzyme Complex: Relationship of the Amino Acid Sequence and Folding Domains to the Three-dimensional Structure, in Conformations and Forces in Protein Folding (Nall, B. T., and Dill, K. A., Eds.) pp 115-124, American Association for the Advancement of Science, Waldorf, MD.
19. Miles, E. W., Ahmed, S. A., Hyde, C. C., Kayastha, A. M., Yang, X., Ruvinov, S. B., and Lu, Z. (1994) in Molecular Aspects of Enzyme Catalysis (Fukui, T., and Soda, K., Eds.) pp 127-146, Kodansha Ltd., Tokyo, Japan.
20. Miles, E. W. (1995) Tryptophan Synthase: Structure, Function, and Protein Engineering, in Subcellular Biochemistry: Proteins: Structure, Function, and Protein Engineering (Biswas, B. B., and Roy, S., Eds.) pp 207-254, Plenum Press, New York.
21. Pan, P., Woehl, E., and Dunn, M. F. (1997) Trends Biochem. Sci. 22, 22-27.
22. Bahar, I., Atilgan, A. R., and Erman, B. (1997) Folding Des. 2, 173-181.
23. Haliloglu, T., Bahar, I., and Erman. B. (1997) Phys. Rev. Lett. 79, 3090-3093.
24. Bahar, I., Wallqvist, A., Covell, D. G., and Jernigan, R. L. (1998) Biochemistry 37, 1067-1075.
25. Bahar, I., Atilgan, A. R., Demirel, M. C., and Erman, B. (1998) Phys. Rev. Lett. 80, 2733-2736.
26. Bahar, I., and Jernigan, R. L. (1998) J. Mol. Biol. 281, 871-884.
27. Bahar, I., Erman, B., Jernigan, R. L., Atilgan, A. R., and Covell, D. G. (1998) J. Mol. Biol. 285, 1023-1037.
28. Demirel, M. C., Atilgan, A. R., Jernigan, R. L., Erman, B., and Bahar, I. (1998) Protein Sci. 7, 2522-2532.
29. Flory, P. J. (1976) Proc. R. Soc. London, Ser. A 351, 351-380.
30. Tirion, M. M. (1996) Phys. Rev. Lett. 77, 1905-1908.
31. Lustig, B. R., Bahar, I., and Jernigan, R. L. (1998) Nucleic Acids Res. 26, 5212-5217.
32. Miles, E. W., Yutani, K., and Ogasahara, K. (1982) Biochemistry 21, 2586-2592.
33. Beasty, A. M., Hurle, M. R., Manz, J. T., Stackhouse, T., Onuffer, J. J., and Matthews, C. R. (1986) Biochemistry 25, 2965-2974.
34. Stackhouse, T. M., Onuffer, J. J., Matthews, C. R., Ahmed, S. A., and Miles, E. W. (1988) Biochemistry 27, 824-832.
35. Chrunyk, B. A., and Matthews, C. R. (1990) Biochemistry 29, 2149-2154.
36. Rhee, S., Miles, E. W., Mozzarelli, A., and Davies, D. R. (1998) Biochemistry 37, 10653-10659.
37. Miles, E. W. (1991) J. Biol. Chem. 266, 10715-10718.
38. Lolis, E., Alber, T., Davenport, R. C., Rose, D., Hartman, F. C., and Petsko, G. A. (1990) Biochemistry 29, 6609-6618.
39. Lolis, E., and Petsko, G. A. (1990) Biochemistry 29, 6619-6625.
40. Wierenga, R. K., Noble, M. E. M., Postma, J. P. M., Groendijk, H., Kalk, K. H., Hol, W. G. J., and Opperdoes, F. R. (1991) Proteins 10, 33-49.
41. Ruvinov, S. B., and Miles, E. W. (1992) FEBS Lett. 299, 197-200.
42. Ogahasara, K., Hiraga, K., Ito, W., Miles, E. W., and Yutani, K. (1992) J. Biol. Chem. 267, 5222-5228.
43. Stroud, R. M. (1994) Nat. Struct. Biol. 1, 131-134.
44. Ruvinov, S. B., Yang, X. J., Parris, K. D., Banik, U., Ahmed, S. A., Miles, E. W., and Sackett, D. L. (1995) J. Biol. Chem. 270, 6357-6369.
45. Zhao, G., and Somerville, R. I. (1992) J. Biol. Chem. 267, 526-541.
46. Kishore, N., Tewari, Y. B., Akers, D. L., Goldberg, R. N., and Miles, E. W. (1998) Biophys. Chem. 73, 265-280.
47. Pearson, D. S. (1977) Macromolecules 10, 696-701.