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Volumn 292, Issue 2, 2006, Pages 519-532

Developmental timing in Dictyostelium is regulated by the Set1 histone methyltransferase

Author keywords

Chromatin; Clock; Dictyostelium; Gene cluster; Lysine 4 methylation; Set1

Indexed keywords

HISTONE H3; HISTONE METHYLTRANSFERASE; LYSINE; BIOLOGICAL MARKER; HISTONE; HISTONE LYSINE METHYLTRANSFERASE; PROTOZOAL PROTEIN;

EID: 33646140512     PISSN: 00121606     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ydbio.2005.12.054     Document Type: Article
Times cited : (35)

References (59)
  • 1
    • 0036299092 scopus 로고    scopus 로고
    • The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly
    • Ahmad K., and Henikoff S. The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly. Mol. Cell 9 (2002) 1191-1200
    • (2002) Mol. Cell , vol.9 , pp. 1191-1200
    • Ahmad, K.1    Henikoff, S.2
  • 3
    • 0345826148 scopus 로고    scopus 로고
    • Vernalization requires epigenetic silencing of FLC by histone methylation
    • Bastow R., Mylne J.S., Lister C., Lippman Z., Martienssen R.A., and Dean C. Vernalization requires epigenetic silencing of FLC by histone methylation. Nature 427 (2004) 164-167
    • (2004) Nature , vol.427 , pp. 164-167
    • Bastow, R.1    Mylne, J.S.2    Lister, C.3    Lippman, Z.4    Martienssen, R.A.5    Dean, C.6
  • 6
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing
    • Benjamini Y., and Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc., B 57 (1995) 289-300
    • (1995) J. R. Stat. Soc., B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 7
    • 0028285402 scopus 로고
    • Folate responsiveness during growth and development of Dictyostelium: separate but related pathways control chemotaxis and gene regulation
    • Blusch J.H., and Nellen W. Folate responsiveness during growth and development of Dictyostelium: separate but related pathways control chemotaxis and gene regulation. Mol. Microbiol. 11 (1994) 331-335
    • (1994) Mol. Microbiol. , vol.11 , pp. 331-335
    • Blusch, J.H.1    Nellen, W.2
  • 9
    • 8844259568 scopus 로고    scopus 로고
    • Epigenome changes in active and inactive polycomb-group-controlled regions
    • Breiling A., O'Neill L.P., D'Eliseo D., Turner B.M., and Orlando V. Epigenome changes in active and inactive polycomb-group-controlled regions. EMBO Rep. 5 (2004) 976-982
    • (2004) EMBO Rep. , vol.5 , pp. 976-982
    • Breiling, A.1    O'Neill, L.P.2    D'Eliseo, D.3    Turner, B.M.4    Orlando, V.5
  • 10
    • 0035893240 scopus 로고    scopus 로고
    • Histone H3 lysine 4 methylation is mediated by Set1 and required for cell growth and rDNA silencing in Saccharomyces cerevisiae
    • Briggs S.D., Bryk M., Strahl B.D., Cheung W.L., Davie J.K., Dent S.Y., Winston F., and Allis C.D. Histone H3 lysine 4 methylation is mediated by Set1 and required for cell growth and rDNA silencing in Saccharomyces cerevisiae. Genes Dev. 15 (2001) 3286-3295
    • (2001) Genes Dev. , vol.15 , pp. 3286-3295
    • Briggs, S.D.1    Bryk, M.2    Strahl, B.D.3    Cheung, W.L.4    Davie, J.K.5    Dent, S.Y.6    Winston, F.7    Allis, C.D.8
  • 11
    • 0037154013 scopus 로고    scopus 로고
    • Evidence that Set1, a factor required for methylation of histone H3, regulates rDNA silencing in S. cerevisiae by a Sir2-independent mechanism
    • Bryk M., Briggs S.D., Strahl B.D., Curcio M.J., Allis C.D., and Winston F. Evidence that Set1, a factor required for methylation of histone H3, regulates rDNA silencing in S. cerevisiae by a Sir2-independent mechanism. Curr. Biol. 12 (2002) 165-170
    • (2002) Curr. Biol. , vol.12 , pp. 165-170
    • Bryk, M.1    Briggs, S.D.2    Strahl, B.D.3    Curcio, M.J.4    Allis, C.D.5    Winston, F.6
  • 12
    • 0034009562 scopus 로고    scopus 로고
    • The Dictyostelium RasS protein is required for macropinocytosis, phagocytosis and the control of cell movement
    • Chubb J.R., Wilkins A., Thomas G.M., and Insall R.H. The Dictyostelium RasS protein is required for macropinocytosis, phagocytosis and the control of cell movement. J. Cell Sci. 113 Pt. 4 (2000) 709-719
    • (2000) J. Cell Sci. , vol.113 , Issue.PART 4 , pp. 709-719
    • Chubb, J.R.1    Wilkins, A.2    Thomas, G.M.3    Insall, R.H.4
  • 13
    • 0023072523 scopus 로고
    • Density-dependent induction of discoidin-I synthesis in exponentially growing cells of Dictyostelium discoideum
    • Clarke M., Kayman S.C., and Riley K. Density-dependent induction of discoidin-I synthesis in exponentially growing cells of Dictyostelium discoideum. Differentiation 34 (1987) 79-87
    • (1987) Differentiation , vol.34 , pp. 79-87
    • Clarke, M.1    Kayman, S.C.2    Riley, K.3
  • 14
    • 0024236602 scopus 로고
    • Analysis of the prestarvation response in growing cells of Dictyostelium discoideum
    • Clarke M., Yang J., and Kayman S.C. Analysis of the prestarvation response in growing cells of Dictyostelium discoideum. Dev. Genet. 9 (1988) 315-326
    • (1988) Dev. Genet. , vol.9 , pp. 315-326
    • Clarke, M.1    Yang, J.2    Kayman, S.C.3
  • 15
    • 0033780450 scopus 로고    scopus 로고
    • A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression
    • Cohen B.A., Mitra R.D., Hughes J.D., and Church G.M. A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression. Nat. Genet. 26 (2000) 183-186
    • (2000) Nat. Genet. , vol.26 , pp. 183-186
    • Cohen, B.A.1    Mitra, R.D.2    Hughes, J.D.3    Church, G.M.4
  • 16
    • 4444244496 scopus 로고    scopus 로고
    • Mechanisms of HP1-mediated gene silencing in Drosophila
    • Danzer J.R., and Wallrath L.L. Mechanisms of HP1-mediated gene silencing in Drosophila. Development 131 (2004) 3571-3580
    • (2004) Development , vol.131 , pp. 3571-3580
    • Danzer, J.R.1    Wallrath, L.L.2
  • 17
    • 0023250545 scopus 로고
    • Disruption of the Dictyostelium myosin heavy chain gene by homologous recombination
    • De Lozanne A., and Spudich J.A. Disruption of the Dictyostelium myosin heavy chain gene by homologous recombination. Science 236 (1987) 1086-1091
    • (1987) Science , vol.236 , pp. 1086-1091
    • De Lozanne, A.1    Spudich, J.A.2
  • 18
    • 0020323360 scopus 로고
    • Differential expression of the members of the discoidin I multigene family during growth and development of Dictyostelium discoideum
    • Devine J.M., Tsang A.S., and Williams J.G. Differential expression of the members of the discoidin I multigene family during growth and development of Dictyostelium discoideum. Cell 28 (1982) 793-800
    • (1982) Cell , vol.28 , pp. 793-800
    • Devine, J.M.1    Tsang, A.S.2    Williams, J.G.3
  • 19
    • 18344395923 scopus 로고    scopus 로고
    • The genome of the social amoeba Dictyostelium discoideum
    • Eichinger L., et al. The genome of the social amoeba Dictyostelium discoideum. Nature 435 (2005) 43-57
    • (2005) Nature , vol.435 , pp. 43-57
    • Eichinger, L.1
  • 20
    • 0037426839 scopus 로고    scopus 로고
    • Rhythmic histone acetylation underlies transcription in the mammalian circadian clock
    • Etchegaray J.P., Lee C., Wade P.A., and Reppert S.M. Rhythmic histone acetylation underlies transcription in the mammalian circadian clock. Nature 421 (2003) 177-182
    • (2003) Nature , vol.421 , pp. 177-182
    • Etchegaray, J.P.1    Lee, C.2    Wade, P.A.3    Reppert, S.M.4
  • 21
    • 0032562720 scopus 로고    scopus 로고
    • Visualization of single RNA transcripts in situ
    • Femino A.M., Fay F.S., Fogarty K., and Singer R.H. Visualization of single RNA transcripts in situ. Science 280 (1998) 585-590
    • (1998) Science , vol.280 , pp. 585-590
    • Femino, A.M.1    Fay, F.S.2    Fogarty, K.3    Singer, R.H.4
  • 22
    • 3042648658 scopus 로고    scopus 로고
    • A cluster of Arabidopsis genes with a coordinate response to an environmental stimulus
    • Finnegan E.J., Sheldon C.C., Jardinaud F., Peacock W.J., and Dennis E.S. A cluster of Arabidopsis genes with a coordinate response to an environmental stimulus. Curr. Biol. 14 (2004) 911-916
    • (2004) Curr. Biol. , vol.14 , pp. 911-916
    • Finnegan, E.J.1    Sheldon, C.C.2    Jardinaud, F.3    Peacock, W.J.4    Dennis, E.S.5
  • 23
    • 0025057255 scopus 로고
    • A role for cAMP-dependent protein kinase A in early Dictyostelium development
    • Firtel R.A., and Chapman A.L. A role for cAMP-dependent protein kinase A in early Dictyostelium development. Genes Dev. 4 (1990) 18-28
    • (1990) Genes Dev. , vol.4 , pp. 18-28
    • Firtel, R.A.1    Chapman, A.L.2
  • 25
    • 0038740693 scopus 로고    scopus 로고
    • Tails of intrigue: phosphorylation of RNA polymerase II mediates histone methylation
    • Hampsey M., and Reinberg D. Tails of intrigue: phosphorylation of RNA polymerase II mediates histone methylation. Cell 113 (2003) 429-432
    • (2003) Cell , vol.113 , pp. 429-432
    • Hampsey, M.1    Reinberg, D.2
  • 26
    • 0028876734 scopus 로고
    • Dictyostelium discoideum contains a single-copy gene encoding a unique subtype of histone H1
    • Hauser L.J., Dhar M.S., and Olins D.E. Dictyostelium discoideum contains a single-copy gene encoding a unique subtype of histone H1. Gene 154 (1995) 119-122
    • (1995) Gene , vol.154 , pp. 119-122
    • Hauser, L.J.1    Dhar, M.S.2    Olins, D.E.3
  • 28
    • 0037470569 scopus 로고    scopus 로고
    • The fission yeast spSet1p is a histone H3K4 methyltransferase that functions in telomere maintenance and DNA repair in an ATM kinase Rad3-dependent pathway
    • Kanoh J., Francesconi S., Collura A., Schramke V., Ishikawa F., Baldacci G., and Geli V. The fission yeast spSet1p is a histone H3K4 methyltransferase that functions in telomere maintenance and DNA repair in an ATM kinase Rad3-dependent pathway. J. Mol. Biol. 326 (2003) 1081-1094
    • (2003) J. Mol. Biol. , vol.326 , pp. 1081-1094
    • Kanoh, J.1    Francesconi, S.2    Collura, A.3    Schramke, V.4    Ishikawa, F.5    Baldacci, G.6    Geli, V.7
  • 31
    • 2942518343 scopus 로고    scopus 로고
    • Mapping global histone acetylation patterns to gene expression
    • Kurdistani S.K., Tavazoie S., and Grunstein M. Mapping global histone acetylation patterns to gene expression. Cell 117 (2004) 721-733
    • (2004) Cell , vol.117 , pp. 721-733
    • Kurdistani, S.K.1    Tavazoie, S.2    Grunstein, M.3
  • 32
    • 0036613754 scopus 로고    scopus 로고
    • Clustering of housekeeping genes provides a unified model of gene order in the human genome
    • Lercher M.J., Urrutia A.O., and Hurst L.D. Clustering of housekeeping genes provides a unified model of gene order in the human genome. Nat. Genet. 31 (2002) 180-183
    • (2002) Nat. Genet. , vol.31 , pp. 180-183
    • Lercher, M.J.1    Urrutia, A.O.2    Hurst, L.D.3
  • 34
    • 0141540848 scopus 로고    scopus 로고
    • Inositol pyrophosphates mediate chemotaxis in Dictyostelium via pleckstrin homology domain-PtdIns(3,4,5)P3 interactions
    • Luo H.R., Huang Y.E., Chen J.C., Saiardi A., Iijima M., Ye K., Huang Y., Nagata E., Devreotes P., and Snyder S.H. Inositol pyrophosphates mediate chemotaxis in Dictyostelium via pleckstrin homology domain-PtdIns(3,4,5)P3 interactions. Cell 114 (2003) 559-572
    • (2003) Cell , vol.114 , pp. 559-572
    • Luo, H.R.1    Huang, Y.E.2    Chen, J.C.3    Saiardi, A.4    Iijima, M.5    Ye, K.6    Huang, Y.7    Nagata, E.8    Devreotes, P.9    Snyder, S.H.10
  • 36
    • 3042709817 scopus 로고    scopus 로고
    • Circadian and light-induced transcription of clock gene Per1 depends on histone acetylation and deacetylation
    • Naruse Y., Oh-hashi K., Iijima N., Naruse M., Yoshioka H., and Tanaka M. Circadian and light-induced transcription of clock gene Per1 depends on histone acetylation and deacetylation. Mol. Cell. Biol. 24 (2004) 6278-6287
    • (2004) Mol. Cell. Biol. , vol.24 , pp. 6278-6287
    • Naruse, Y.1    Oh-hashi, K.2    Iijima, N.3    Naruse, M.4    Yoshioka, H.5    Tanaka, M.6
  • 37
    • 0344022572 scopus 로고    scopus 로고
    • Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity
    • Ng H.H., Robert F., Young R.A., and Struhl K. Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity. Mol. Cell 11 (2003) 709-719
    • (2003) Mol. Cell , vol.11 , pp. 709-719
    • Ng, H.H.1    Robert, F.2    Young, R.A.3    Struhl, K.4
  • 38
    • 0035839110 scopus 로고    scopus 로고
    • Transitions in distinct histone H3 methylation patterns at the heterochromatin domain boundaries
    • Noma K., Allis C.D., and Grewal S.I. Transitions in distinct histone H3 methylation patterns at the heterochromatin domain boundaries. Science 293 (2001) 1150-1155
    • (2001) Science , vol.293 , pp. 1150-1155
    • Noma, K.1    Allis, C.D.2    Grewal, S.I.3
  • 39
    • 0027075169 scopus 로고
    • Multiple cyclic AMP receptors are linked to adenylyl cyclase in Dictyostelium
    • Pupillo M., Insall R., Pitt G.S., and Devreotes P.N. Multiple cyclic AMP receptors are linked to adenylyl cyclase in Dictyostelium. Mol. Biol. Cell 3 (1992) 1229-1234
    • (1992) Mol. Biol. Cell , vol.3 , pp. 1229-1234
    • Pupillo, M.1    Insall, R.2    Pitt, G.S.3    Devreotes, P.N.4
  • 40
    • 0026071719 scopus 로고
    • Induction of gene expression in Dictyostelium by prestarvation factor, a factor secreted by growing cells
    • Rathi A., Kayman S.C., and Clarke M. Induction of gene expression in Dictyostelium by prestarvation factor, a factor secreted by growing cells. Dev. Genet. 12 (1991) 82-87
    • (1991) Dev. Genet. , vol.12 , pp. 82-87
    • Rathi, A.1    Kayman, S.C.2    Clarke, M.3
  • 42
    • 0026502043 scopus 로고
    • Cloning and characterization of the Dictyostelium discoideum rasG genomic sequences
    • Robbins S.M., Williams J.G., Spiegelman G.B., and Weeks G. Cloning and characterization of the Dictyostelium discoideum rasG genomic sequences. Biochim. Biophys. Acta 1130 (1992) 85-89
    • (1992) Biochim. Biophys. Acta , vol.1130 , pp. 85-89
    • Robbins, S.M.1    Williams, J.G.2    Spiegelman, G.B.3    Weeks, G.4
  • 48
    • 0024852656 scopus 로고
    • Primary structure and regulation of vegetative specific genes of Dictyostelium discoideum
    • Singleton C.K., Manning S.S., and Ken R. Primary structure and regulation of vegetative specific genes of Dictyostelium discoideum. Nucleic Acids Res. 17 (1989) 9679-9692
    • (1989) Nucleic Acids Res. , vol.17 , pp. 9679-9692
    • Singleton, C.K.1    Manning, S.S.2    Ken, R.3
  • 49
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
    • (No 1, Article 3)
    • Smyth G.K. Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol. 3 (2004) (No 1, Article 3)
    • (2004) Stat. Appl. Genet. Mol. Biol. , vol.3
    • Smyth, G.K.1
  • 50
    • 0003328368 scopus 로고    scopus 로고
    • Evidence for large domains of similarly expressed genes in the Drosophila genome
    • Spellman P.T., and Rubin G.M. Evidence for large domains of similarly expressed genes in the Drosophila genome. J. Biol. 1 (2002) 5
    • (2002) J. Biol. , vol.1 , pp. 5
    • Spellman, P.T.1    Rubin, G.M.2
  • 51
    • 0034610814 scopus 로고    scopus 로고
    • The language of covalent histone modifications
    • Strahl B.D., and Allis C.D. The language of covalent histone modifications. Nature 403 (2000) 41-45
    • (2000) Nature , vol.403 , pp. 41-45
    • Strahl, B.D.1    Allis, C.D.2
  • 52
    • 0033592999 scopus 로고    scopus 로고
    • Methylation of histone H3 at lysine 4 is highly conserved and correlates with transcriptionally active nuclei in Tetrahymena
    • Strahl B.D., Ohba R., Cook R.G., and Allis C.D. Methylation of histone H3 at lysine 4 is highly conserved and correlates with transcriptionally active nuclei in Tetrahymena. Proc. Natl. Acad. Sci. U. S. A. 96 (1999) 14967-14972
    • (1999) Proc. Natl. Acad. Sci. U. S. A. , vol.96 , pp. 14967-14972
    • Strahl, B.D.1    Ohba, R.2    Cook, R.G.3    Allis, C.D.4
  • 53
    • 0025832630 scopus 로고
    • Gene targeting of the aggregation stage cAMP receptor cAR1 in Dictyostelium
    • Sun T.J., and Devreotes P.N. Gene targeting of the aggregation stage cAMP receptor cAR1 in Dictyostelium. Genes Dev. 5 (1991) 572-582
    • (1991) Genes Dev. , vol.5 , pp. 572-582
    • Sun, T.J.1    Devreotes, P.N.2
  • 54
    • 0014200325 scopus 로고
    • Cultivation of Dictyostelium discoideum in axenic medium
    • Sussman R., and Sussman M. Cultivation of Dictyostelium discoideum in axenic medium. Biochem. Biophys. Res. Commun. 29 (1967) 53-55
    • (1967) Biochem. Biophys. Res. Commun. , vol.29 , pp. 53-55
    • Sussman, R.1    Sussman, M.2
  • 55
    • 0027217068 scopus 로고
    • A transformation vector for Dictyostelium discoideum with a new selectable marker bsr
    • Sutoh K. A transformation vector for Dictyostelium discoideum with a new selectable marker bsr. Plasmid 30 (1993) 150-154
    • (1993) Plasmid , vol.30 , pp. 150-154
    • Sutoh, K.1
  • 57
    • 0033397841 scopus 로고    scopus 로고
    • Preparation of site-specific antibodies to acetylated histones
    • White D.A., Belyaev N.D., and Turner B.M. Preparation of site-specific antibodies to acetylated histones. Methods 19 (1999) 417-424
    • (1999) Methods , vol.19 , pp. 417-424
    • White, D.A.1    Belyaev, N.D.2    Turner, B.M.3
  • 58
    • 0037382574 scopus 로고    scopus 로고
    • Human Sin3 deacetylase and trithorax-related Set1/Ash2 histone H3K4 methyltransferase are tethered together selectively by the cell-proliferation factor HCF-1
    • Wysocka J., Myers M.P., Laherty C.D., Eisenman R.N., and Herr W. Human Sin3 deacetylase and trithorax-related Set1/Ash2 histone H3K4 methyltransferase are tethered together selectively by the cell-proliferation factor HCF-1. Genes Dev. 17 (2003) 896-911
    • (2003) Genes Dev. , vol.17 , pp. 896-911
    • Wysocka, J.1    Myers, M.P.2    Laherty, C.D.3    Eisenman, R.N.4    Herr, W.5
  • 59
    • 0035145588 scopus 로고    scopus 로고
    • Interaction of gdt1 and protein kinase A (PKA) in the growth-differentiation-transition in Dictyostelium
    • Zeng C., Anjard C., Primpke G., Wetterauer B., Wille S., and Nellen W. Interaction of gdt1 and protein kinase A (PKA) in the growth-differentiation-transition in Dictyostelium. Differentiation 67 (2001) 25-32
    • (2001) Differentiation , vol.67 , pp. 25-32
    • Zeng, C.1    Anjard, C.2    Primpke, G.3    Wetterauer, B.4    Wille, S.5    Nellen, W.6


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