Information management for the study of allergies

Inflammation and Allergy - Drug Targets

Volumn 5, Issue 1, 2006, Pages 35-42

  Brusic, Vladimir ^a  

^a UNIVERSITY OF QUEENSLAND   (Australia)

Author keywords

Allergen databases; Allergenicity prediction; Allergic cross reactivity

Indexed keywords

ADRENALIN; ALLERGEN; ANTIHISTAMINIC AGENT; CORTICOSTEROID; HLA DP ANTIGEN; HLA DQ ANTIGEN; HLA DR ANTIGEN; IMMUNOGLOBULIN E; INSECT VENOM; EPITOPE;

ACCESS TO INFORMATION; ALLERGENICITY; ALLERGIC DISEASE; ASTHMA; BIOINFORMATICS; DATA ANALYSIS; DATA BASE; DNA MICROARRAY; EPITOPE MAPPING; FOOD ALLERGY; GENE EXPRESSION; GENETIC VARIABILITY; GENOMICS; HUMAN; IMMUNOPATHOGENESIS; IMMUNOREACTIVITY; IMMUNOTHERAPY; INFORMATION PROCESSING; INFORMATION RETRIEVAL; NONHUMAN; PROTEIN ANALYSIS; PROTEOMICS; REVIEW; TH2 CELL; ANIMAL; BIOLOGY; GENETIC DATABASE; GENETICS; HYPERSENSITIVITY; IMMUNOLOGY;

ALLERGENS; ANIMALS; COMPUTATIONAL BIOLOGY; DATABASES, GENETIC; EPITOPES; HUMANS; HYPERSENSITIVITY;

EID: 33646068775     PISSN: 18715281     EISSN: None     Source Type: Journal    
DOI: 10.2174/187152806775269277     Document Type: Review

References (90)

1. Ono, S.J. Annu. Rev. Immunol., 2000, 18, 347-366.
2. Brusic, V.; Millot, M.; Petrovsky, N.; Gendel, S.M.; Gigonzac, O.; Stelman, S.J. Allergy, 2003, 58, 1093-1100.
3. Cookson, W. Immunol. Rev., 2002, 190, 195-206.
4. Deinhofer, K.; Sevcik, H.; Balic, N.; Harwanegg, C.; Hiller, R.; Rumpold, H.; Mueller, M.W.; Spitzauer, S. Methods, 2004, 32, 249-254.
5. Pineiro, C.; Barros-Velazquez, J.; Vazquez, J.; Figueras, A.; Gallardo, J.M. Proteome Res., 2003, 2, 127-135.
6. Toda M.; Ono S.J. Immunology, 2002, 106, 1-10.
7. Puc, M. Ann. Agric. Environ. Med., 2003, 10, 143-149.
8. de Lalla, C.; Sturniolo, T.; Abbruzzese, L.; Hammer, J.; Sidoli, A.; Sinigaglia, F.; Panina-Bordignon, P. J. Immunol., 1999, 163, 1725-1729.
9. Brusic, V.; Petrovsky, N.; Gendel, S.M.; Millot, M.; Gigonzac, O.; Stelman, S.J. Allergy, 2003, 58, 1083-1092.
10. Hamalainen, H.; Zhou, H.; Chou, W.; Hashizume, H.; Heller, R.; Lahesmaa, R. Genome Biol., 2001, 167, 3057-3063.
11. Li, X.D.; Essayan, D.M.; Liu, M.C.; Beaty, T.H.; Huang, S.K. Genes Immun., 2001, 2, 88-98.
12. Brutsche, M.H.; Brutsche, I.C.; Wood, P.; Mogulkoc, N.; Custovic, A.; Egan, J.; Woodcock, A. Clin. Exp. Immunol., 2001, 123, 181-187.
13. Karp, C.L.; Grupe, A.; Schadt, E.; Ewart, S.L.; Keane-Moore, M.; Cuomo, P.J.; Kohl, J.; Wahl, L.; Kuperman, D.; Germer, S.; Aud, D.; Peltz, G.; Wills-Karp, M. Nat. Immunol., 2000, 1, 221-226.
14. Saito, H.; Nakajima, T.; Matsumoto K. Int. Arch. Allergy Immunol., 2001, 125, 1-8.
15. Viquez, O.M.; Summer, C.G.; Dodo, H.W. J. Allergy Clin. Immunol., 2001, 107, 713-717.
16. Pawliczak, R.; Shelhamer, J.H. Allergy, 2003, 58, 973-980.
17. Ticha M.; Pacakova V.; Stulik K. J. Chromatogr. B Analyt. Technol. Biomed. Life Sci., 2002, 771, 343-353.
18. Fujimura, T.; Shigeta, S.; Kawamoto, S.; Aki, T.; Masubuchi, M.; Hayashi, T.; Yoshizato, K.; Ono, K. Int. Arch. Allergy Immunol., 2004, 133, 126-135.
19. Yu, C.J.; Lin, Y.F.; Chiang, B.L.; Chow, L.P. J. Immunol., 2003, 170, 445-453.
20. Halapi, E.; Hakonarson, H. Curr. Opin. Pulm. Med., 2004, 10, 22-30.
21. Aalberse, R.C. J. Allergy Clin. Immunol., 2000, 106, 228-238.
22. Shreffler, W.G.; Beyer, K.; Chu, T.H.; Burks, A.W, Sampson, H.A. J. Allergy Clin. Immunol. 2004, 113, 776-782.
23. Laukkanen, M.L.; Makinen-Kiljunen, S.; Isoherranen, K.; Haahtela, T.; Soderlund, H.; Takkinen, K. J. Immunol. Methods, 2003, 278, 271-281.
24. de Silva, H.D.; Gardner, L.M.; Drew, A.C.; Beezhold, D.H.; Rolland, J.M.; O'Hehir, R.E. Clin. Exp. Allergy, 2004, 34, 611-618.
25. Bohle, B.; Radakovics, A.; Jahn-Schmid, B.; Hoffmann-Sommergruber, K.; Fischer, G.F.; Ebner, C. Eur. J. Immunol., 2003, 33, 3303-3310.
26. King, T.P.; Spangfort, M.D. Int. Arch. Allergy Immunol., 2000; 123, 99-106.
27. Bolhaar, S.T.; Tiemessen, M.M.; Zuidmeer, L.; van Leeuwen, A.; Hoffmann-Sommergruber K.; Bruijnzeel-Koomen C.A.; Taams L.S.; Knol E.F.; van Hoffen E.; van Ree R.; Knulst A.C. Clin. Exp. Allergy, 2004, 34, 761-769.
28. Van Ree, R. Curr Opin Allergy Clin Immunol., 2004, 4, 235-240.
29. Spangfort, M.D. Arb. Paul Ehrlich Inst. Bundesami Sera Impfstoffe Frankf A. M., 2003, 94, 151-154.
30. Hartl, A.; Weiss, R.; Hochreiter, R.; Scheiblhofer, S.; Bauer, R.; Valenta, R.; Ferreira, F.; Leitner, W.; Thalhamer, J. Arb. Paul Ehrlich Inst. Bundesamt Sera Impfstoffe Frankf. A. M., 2003, 94, 279-298.
31. Westritschnig, K.; Focke, M.; Verdino, P.; Goessler, W.; Keller, W.; Twardosz, A.; Mari, A.; Horak, F.; Wiedermann, U.; Hartl, A.; Thalhamer, J.; Sperr, W.R.; Valent, P.; Valenta, R. J. Immunol., 2004, 172, 5684-5692.
32. Akdis C.A.; Blaser K. Arb. Paul Ehrlich Inst. Bundesamt Sera Impfstoffe Frankf A. M., 2003, 94, 219-227.
33. Cromwell, O.; Kahlert, H.; Schramm, G.; Suck, R.; Nandy, A.; Weber, B.; Fiebig, H. Arb. Paul Ehrlich Inst. Bundesamt Sera Impfstoffe Frankf. A. M., 2003, 94, 156-161.
34. King, T.P.; Hoffman, D.; Lowenstein, H.; Marsh, D.G.; Platts-Mills, T.A.E.; Thomas, W. Bull. WHO, 1994, 72, 797-806.
35. Huby, R.D.J.; Dearman, R.J.; Kimber, I. Toxicol. Sci., 2000, 55, 235-246.
36. Furmonaviciene, R.; Shakib, F. Mol. Pathol., 2001; 54, 155-159.
37. Ivanciuc, O.; Schein, C.H.; Braun, W. Bioinformatics, 2002, 18, 1358-1364.
38. Topham C.M.; Srinivasan N.; Thorpe C.J.; Overington J.P.; Kalsheker N.A. Protein Eng., 1994, 7, 869-894.
39. Ichikawa, K.; Vailes, L.D.; Pomes, A.; Chapman MD. Int. Arch. Allergy Immunol., 2001, 124, 55-56.
40. Puerta, L.; Kennedy, M.W.; Jimenez, S.; Caraballo, L. Int. Arch. Allergy Immunol., 1999, 119, 181-184.
41. Ramachandran, H.; Banerjee, B.; Greenberger, P.A.; Kelly, K.J.; Fink, J.N.; Kurup, V.P. Clin. Diagn. Lab. Immunol., 2004, 11, 261-265.
42. Karisola, P.; Alenius, H.; Mikkola, J.; Kalkkinen, N.; Helin, J.; Pentikainen, O.T.; Repo, S.; Reunala, T.; Turjanmaa, K.; Johnson, M.S.; Palosuo, T.; Kulomaa, M.S. J. Biol. Chem., 2002, 277, 22656-22661.
43. Robotham, J.M.; Teuber, S.S.; Sathe, S.K.; Roux, K.H. J. Allergy Clin. Immunol., 2002, 109, 143-149.
44. van Kampen V.; Liebers V.; Sander I.; Chen Z.; Baur X.; Raulf-Heimsoth M.; Falkenberg F.W. Allergy, 2001, 56, 118-125.
45. Garcia-Casado, G.; Pacios, L.F.; Diaz-Perales, A.; Sanchez-Monge, R.; Lombardero, M.; Garcia-Selles, F.J.; Polo, F.; Barber, D.; Salcedo, G. J. Allergy Clin. Immunol., 2003, 112, 599-605.
46. Crameri, R. Biochem J., 2003, 376(Pt 1), e1-2.
47. Valenta, R.; Kraft, D. Immunol. Rev., 2001, 179, 119-127.
48. Romagnani, S. Immunol. Today, 1997, 18, 263-266.
49. van Neerven, R.J.; Ebner, C.; Yssel, H.; Kapsenberg, M.L.; Lamb, J.R. Immunol. Today, 1996, 17, 526-532.
50. Robinson, J.; Malik, A.; Parham, P.; Bodmer, J.G.; Marsh, S.G. Tissue Antigens, 2000, 55, 280-287.
51. Kim, Y.K.; Oh, H.B.; Oh, S.Y.; Cho, S.H.; Kim, Y.Y.; Min, K.U. Clin. Exp. Allergy, 2001, 31, 110-115.
52. Friedl-Hajek, R.; Spangfort, M.D.; Schou, C.; Breiteneder, H.; Yssel, H.; Joost van Neerven, R.J. Clin. Exp. Allergy, 1999, 29, 478-487.
53. Bian, H.; Reidhaar-Olson, J.F.; Hammer, J. Methods, 2003, 29, 299-309.
54. Benson, D.A.; Karsch-Mizrachi, I.; Lipman, D.J.; Ostell, J.; Wheeler, D.L. Nucl. Acids Res., 2004, 32, D23-26.
55. Bairoch, A.; Boeckmann, B; Ferro, S. Gasteiger E. Brief. Bioinform. 2004, 5, 39-55.
56. Bourne P.E.; Westbrook J.; Berman H.M. Brief Bioinform., 2004, 5, 23-30.
57. Brusic, V.; Rudy, G.; Harrison, L.C. Nucl. Acids Res., 1998, 26, 368-371.
58. Schönbach, C.; Koh, J.L.; Flower, D.R.; Wong, L.; Brusic, V. Nucl. Acids Res., 2002, 30, 226-229.
59. Swoboda, I.; Jilek, A.; Ferreira, F.; Engel, E.; Hoffmann-Sommergruber, K.; Scheiner, O.; Kraft, D.; Breiteneder, H.; Pittenauer, E.; Schmid, E.; Vicente, O.; Heberle-Bors, E.; Ahorn, H.; Breitenbach, M. J. Biol. Chem., 1995, 270, 2607-2613.
60. Kettner, A.; Hughes, G.J.; Frutiger, S.; Astori, M.; Roggero, M.; Spertini, F.; Corradin, G. J. Allergy Clin. Immunol., 2001, 107, 9194-20.
61. Hileman, R.E.; Silvanovich, A.; Goodman, R.E.; Rice, E.A.; Holleschak, G.; Astwood, J.D.; Hefle, S.L. Int. Arch. Allergy Immunol., 2002, 128, 280-291.
62. Gendel, S.M. Adv. Food. Nutr. Res., 1998, 42, 63-92
63. Wjst, M; Immervoll, T. Bioinformatics, 1998, 14, 827-828.
64. Ivanciuc, O.; Schein, C.H.; Braun, W. Nucl. Acids Res., 2003, 31, 359-362.
65. Pearson, W.R. Methods Mol. Biol., 1994, 25, 365-389.
66. Joint FAO/WHO Expert Consultation. Evaluation of Allergenicity of Genetically Modified Foods. FAO/WHO, Rome, 2001. (www.who.int/foodsafety/publications/biotech/en/ec_jan2001.pdf).
67. Codex Alimentarius Comission. Codex Principles and Guidelines on Foods Derived from Biotechnology. (ftp://ftp.fao.org/codex/standard/en/ CodexTextsBiotechFoods.pdf). FAO prepublication, 2003.
68. Altschul, S.F.; Madden T.L.; Schaffer, A.A.; Zhang, J.; Zhang, Z.; Miller, W.; Lipman, D.J. Nucl. Acids Res., 1997, 25, 3389-3402.
69. Brusic, V.; Petrovsky, N. Trends Immunol., 2003, 24, 225-228.
70. Luttkopf, D.; Muller, U.; Skov, P.S.; Ballmer-Weber, B.K.; Wuthrich, B.; Skamstrup Hansen, K.; Poulsen, L.K.; Kastner, M.; Haustein, D.; Vieths, S. Mol. Immunol., 2002, 38, 515-525.
71. Scheurer, S.; Son, D.Y.; Boehm, M.; Karamloo, F.; Franke, S.; Hoffmann, A.; Haustein, D.; Vieths, S. Mol. Immunol. 1999, 36, 155-167.
72. Furtado, P.B.; Furmonaviciene, R.; McElveen, J.; Sewell, H.F.; Shakib, F. Proteins, 2001, 43, 134-144.
73. Smith, A.M.; Benjamin, D.C.; Hozic, N.; Derewenda, U.; Smith, W.A.; Thomas, W.R.; Gafvelin, G.; van Hage-Hamsten, M.; Chapman, M.D. J. Allergy Clin. Immunol., 2001, 107, 977-984.
74. Brusic, V.; Flower, D.R. Drug Discov. Today: Biosilico, 2004, 2, 18-23.
75. Uzogara S.G. Biotechnol. Adv., 2000, 18, 179-206.
76. Gendel, S.M. Ann. N. Y. Acad. Sci., 2002, 964, 87-98.
77. Metcalfe, D.D.; Astwood, J.D.; Townsend, R.; Sampson, H.A.; Taylor, S.L.; Fuchs, R.L. Rev. Food Sci. Nutr., 1996, 36 Suppl, S165-186.
78. Stanley, J.S.; King, N.; Burks, A.W.; Huang, S.K.; Sampson, H.; Cockrell, G.; Helm, R.M.; West, C.M.; Bannon, G.A. Arch. Biochem. Biophys., 1997, 342, 244-253.
79. Shin, D.S.; Compadre, C.M.; Maleki, S.J.; Kopper, R.A.; Sampson, H.; Huang, S.K.; Burks, A.W.; Bannon, G.A. J. Biol. Chem., 1998, 273, 13753-13759.
80. Stadler, M.B.; Stadler, B.M. FASEB J., 2003, 17, 1141-1143.
81. Zorzet, A.; Gustafsson, M.; Hammerling, U. In Silico Biol., 2002, 2, 525-534.
82. Pearson, W.R. Methods Mol. Biol., 2000, 132, 185-219.
83. Soeria-Atmadja, D.; Zorzet, A.; Gustafsson, M.G.; Hammerling, U. Int. Arch. Allergy Immunol., 2004, 133, 101-112.
84. Bailey, T.L.; Elkan, C.; Proc. Int. Conf. Intell. Syst. Mol. Biol., 1995, 3, 21-29.
85. Li, K.B.; Issac, P.; Krishnan, A. Bioinformatics, 2004, 20, 2572-8.
86. Larche, M.; Ferreira, F.; Mohapatra, S.S. Clin. Allergy Immunol., 2004, 18, 641-661.
87. Alexander, C.; Kay, A.B.; Larche, M. Curr. Drug. Targets Inflamm. Allergy, 2002, 1, 353-361.
88. Larche, M. Br. Med. Bull., 2000, 56, 1019-1036.
89. Woodcock, A.; Custovic, A. Br. Med. Bull., 2000, 56, 1071-1086.
90. Sampson, H.A. Br. Med. Bull., 2000, 56, 925-935.