Why does Kluyveromyces lactis not grow under anaerobic conditions? Comparison of essential anaerobic genes of Saccharomyces cerevisiae with the Kluyveromyces lactis genome

FEMS Yeast Research

Volumn 6, Issue 3, 2006, Pages 393-403

  Ishtar Snoek, I ^a   Yde Steensma, H ^a,b  

^a LEIDEN UNIVERSITY   (Netherlands)

^b DELFT UNIVERSITY OF TECHNOLOGY   (Netherlands)

Author keywords

Anaerobic essential genes; Kluyveromyces lactis; Saccharomyces cerevisiae; Yeast deletion strains

Indexed keywords

OXYGEN; STEROL;

ANAEROBIC METABOLISM; ARG82 GENE; ARTICLE; ARV1 GENE; BTS1 GENE; CAX4 GENE; CDC40 GENE; CNM67 GENE; CONTROLLED STUDY; CTF4 GENE; DBP7 GENE; DRS2 GENE; FUNGAL GENE; FUNGUS GROWTH; FZO1 GENE; GENE FUNCTION; GENE LIBRARY; GENETIC IDENTIFICATION; GENOME; GUP1 GENE; HFI1 GENE; HPR1 GENE; IES2 GENE; KLUYVEROMYCES; MRPL10 GENE; NONHUMAN; NPT1 GENE; PGD1 GENE; RIM8 GENE; SACCHAROMYCES CEREVISIAE; SIN4 GENE; SNF1 GENE; SPT20 GENE; VPS65 GENE;

ANAEROBIOSIS; BIOLOGICAL TRANSPORT; GENE DELETION; GENES, ESSENTIAL; GENES, FUNGAL; GENOME, FUNGAL; GENOMIC LIBRARY; KLUYVEROMYCES; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; STEROLS;

FUNGI; KLUYVEROMYCES; KLUYVEROMYCES LACTIS; SACCHAROMYCES CEREVISIAE;

EID: 33645962833     PISSN: 15671356     EISSN: 15671364     Source Type: Journal    
DOI: 10.1111/j.1567-1364.2005.00007.x     Document Type: Article

References (52)

1. Alimardani P Regnacq M Moreau-Vauzelle C Ferreira T Rossignol T Berges T 2004 SUT1-promoted sterol uptake involves the ABC transporter Aus1 and the mannoprotein Dan1 whose synergistic action is sufficient for this process Biochem J 381 195 202
2. Andreasen AA Stier TJB 1953 Anaerobic nutrition of Saccharomyces cerevisiae. I. Ergosterol requirement for growth in a defined medium J Cell Physiol 41 23 36
3. +-dependent glycerol 3-phosphate dehydrogenase encoded by GPD1 and GPD2 have distinct roles in osmoadaptation and redox regulation EMBO J 16 2179 2187
4. Arikawa Y Enomoto K Muratsubaki H Okazaki M 1998 Soluble fumarate reductase isoenzymes from Saccharomyces cerevisiae are required for anaerobic growth FEMS Microbiol Lett 165 111 116
5. Bakker BM Bro C Kotter P Luttik MA van Dijken JP Pronk JT 2000 The mitochondrial alcohol dehydrogenase Adh3p is involved in a redox shuttle in Saccharomyces cerevisiae J Bacteriol 182 4730 4737
6. Betina S Gavurnikova G Haviernik P Sabova L Kolarov J 1995 Expression of the AAC2 gene encoding the major mitochondrial ADP/ATP carrier in Saccharomyces cerevisiae is controlled at the transcriptional level by oxygen, heme, and HAP2 factor Eur J Biochem 229 651 657
7. Bolotin-Fukuhara M Toffano-Nioche C Artiguenave F Duchateau-Nguyen G Lemaire MR Montrocher RC Termier M Wincker P Wesolowski-Louvel M 2000 Genomic exploration of the hemiascomycetous yeasts 11. Kluyveromyces lactis FEBS Lett 487 66 70
8. Breunig KD Steensma HY 2003 Kluyveromyces lactis genetics, physiology, and application Functional Genetics of Industrial Yeasts deWinde JH ed.), pp. 171 205 Springer-Verlag Berlin
9. Breunig KD Bolotin-Fukuhara M Bianchi MM et al 2000 Regulation of primary carbon metabolism in Kluyveromyces lactis Enzymes Microbiol Technol 26 771 780
10. Burke PV Raitt D Allen L Kellog EA Poyton RO 1997 Effect of oxygen concentration on the expression of cytochrome c and cytochrome c oxidase genes in yeast J Biol Chem 272 14705 14712
11. Chabes A Domkin V Larsson G Liu A Graslund A Wijmenga S Thelander L 2000 Yeast ribonucleotide reductase has a heterodimeric iron-radical-containing subunit Proc Natl Acad Sci USA 97 2474 2479
12. Clarkson SP Large PJ Boulton CA Bamforth CW 1991 Synthesis of superoxide dismutase, catalase and other enzymes and oxygen and superoxide toxicity during changes in oxygen concentration in cultures of brewing yeast Yeast 7 91 103
13. Crowley JH Leak FW Jr. Shianna KV Tove S Parks LW 1998 A mutation in a purported regulatory gene affects control of sterol uptake in Saccharomyces cerevisiae J Bacteriol 180 4177 4183
14. Deckert J Perini R Balasubramanian B Zitomer RS 1995 Multiple elements and auto-repression regulate Rox1, a repressor of hypoxic genes in Saccharomyces cerevisiae Genetics 139 1149 1158
15. Drgon T Sabova L Nelson N Kolarov J 1991 ADP/ATP translocator is essential only for anaerobic growth of yeast Saccharomyces cerevisiae FEBS Lett 289 159 162
16. Dunn TM Haak D Monaghan E Beeler TJ 1998 Synthesis of monohydroxylated inositolphosphorylceramide (IPC-C) in Saccharomyces cerevisiae requires Scs7p, a protein with both a cytochrome b5-like domain and a hydroxylase/desaturase domain Yeast 14 311 321
17. Enomoto K Arikawa Y Muratsubaki H 2002 Physiological role of soluble fumarate reductase in redox balancing during anaerobiosis in Saccharomyces cerevisiae FEMS Microbiol Lett 215 103 108
18. Faergeman NJ DiRusso CC Elberger A Knudsen J Black PN 1997 Disruption of the Saccharomyces cerevisiae homologue to the murine fatty acid transport protein impairs uptake and growth on long-chain fatty acids J Biol Chem 272 8531 8538
19. Gavurnikova G Sabova L Kissova I Haviernik P Kolarov J 1996 Transcription of the AAC1 gene encoding an isoform of mitochondrial ADP/ATP carrier in Saccharomyces cerevisiae is regulated by oxygen in a heme-independent manner Eur J Biochem 239 759 763
20. Giaever G Chu AM Ni L et al 2002 Functional profiling of the Saccharomyces cerevisiae genome Nature 418 387 391
21. Goffrini P Algeri AA Donnini C Wesolowski-Louvel M Ferrero I 1989 RAG1 and RAG2 nuclear genes involved in the dependence/independence on mitochondrial respiratory function for growth on sugars Yeast 5 99 106
22. Goffrini P Wesolowski-Louvel M Ferrero I Fukuhara H 1990 RAG1 gene of the yeast Kluyveromyces lactis codes for a sugar transporter Nucleic Acids Res 18 5294 5294
23. Gojkovic Z Knecht W Zameitat E Warneboldt J Coutelis JB Pynyaha Y Neuveglise C Møller K Loffler M Piskur J 2005 Horizontal gene transfer promoted evolution of the ability to propagate under anaerobic conditions in yeasts Mol Gen Genet 271 387 393
24. Heus JJ Zonneveld BJM Steensma HY Van den Berg JA 1990 Centromeric DNA of Kluyveromyces lactis Curr Genet 18 517 522
25. Kiers J Zeeman AM Luttik M Thiele C Castrillo JI Steensma HY van Dijken JP Pronk JT 1998 Regulation of alcoholic fermentation in batch and chemostat cultures of Kluyveromyces lactis CBS 2359 Yeast 14 459 469
26. Kolarov J Kolarova N Nelson N 1990 A third ADP/ATP translocator gene in yeast J Biol Chem 265 14195 14201
27. Kolberg M Strand KR Graff P Andersson K 2004 Structure, function, and mechanism of ribonucleotide reductases Biochim Biophys Acta 1699 1 34
28. Kwast KE Lai LC Menda N James DT III. Aref S Burke PV 2002 Genomic analyses of anaerobically induced genes in Saccharomyces cerevisiae functional roles of Rox1 and other factors in mediating the anoxic response J Bacteriol 184 250 265
29. Lambert JR Bilanchone VW Cumsky MG 1994 The ORD1 gene encodes a transcription factor involved in oxygen regulation and is identical to IXR1, a gene that confers cisplatin sensitivity to Saccharomyces cerevisiae Proc Natl Acad Sci USA 91 7345 7349
30. ter Linde JJM Liang H Davis RW Steensma HY van Dijken JP Pronk JT 1999 Genome-wide transcriptional analysis of aerobic and anaerobic chemostat cultures of Saccharomyces cerevisiae J Bacteriol 181 7409 7413
31. Møller K Olsson L Piškur J 2004 Ability for anaerobic growth is not sufficient for development of the petite phenotype in Saccharomyces kluyveri J Bacteriol 183 2485 2489
32. Nagy M Lacroute F Thomas D 1992 Divergent evolution of pyrimidine biosynthesis between anaerobic and aerobic yeasts Proc Natl Acad Sci USA 89 8966 8970
33. Ness F Achstetter T Duport C Karst F Spagnoli R Degryse E 1998 Sterol uptake in Saccharomyces cerevisiae heme auxotrophic mutants is affected by ergosterol and oleate but not by palmitoleate or by sterol esterification J Bacteriol 180 1913 1919
34. Ness F Bourot S Régnacq M Spagnoli R Bergès T Karst F 2001 SUT1 is a putative Zn[II]2Cys6-transcription factor whose upregulation enhances both sterol uptake and synthesis in aerobically growing Saccharomyces cerevisiae cells Eur J Biochem 268 1585 1595
35. + metabolism in Saccharomyces cerevisiae FEBS Lett 517 97 102
36. Piper MDW Daran-Lapujade P Bro C Regenberg B Knudsen S Nielsen J Pronk JT 2004 Reproducibility of oligonucleotide microarray transcriptome analyses J Biol Chem 277 37001 37008
37. Plattner H Schatz G 1969 Promitochondria of anaerobically grown yeast III Morphology Biochemistry 8 339 343
38. Rosenfeld E Beauvoit B 2003 Role of the non-respiratory pathways in the utilization of molecular oxygen by Saccharomyces cerevisiae Yeast 20 1115 1144
39. Rubio-Texeira M Castrillo JI Adam AC Ugalde UO Polaina J 1998 Highly efficient assimilation of lactose by a metabolically engineered strain of Saccharomyces cerevisiae Yeast 14 827 837
40. Sabova L Zeman I Supek F Kolarov J 1993 Transcriptional control of AAC3 gene encoding mitochondrial ADP/ATP translocator in Saccharomyces cerevisiae by oxygen, heme and ROX1 factor Eur J Biochem 213 547 553
41. Shi NQ Jeffries TW 1998 Anaerobic growth and improved fermentation of Pichia stipitis bearing a URA1 gene from Saccharomyces cerevisiae Appl Microbiol Biotechnol 50 339 345
42. Shianna KV Dotson WD Tove S Parks LW 2001 Identification of a UPC2 homolog in Saccharomyces cerevisiae and its involvement in aerobic sterol uptake J Bacteriol 183 830 834
43. Stukey JE McDonough VM Martin CE 1990 The OLE1 gene of Saccharomyces cerevisiae encodes the delta 9 fatty acid desaturase and can be functionally replaced by the rat stearoyl-CoA desaturase gene J Biol Chem 265 20144 20149
44. Ter Linde JJM Steensma HY 2002 A microarray-assisted screen for potential Hap1 and Rox1 target genes in Saccharomyces cerevisiae Yeast 19 825 840
45. Tinkelenberg AH Liu Y Alcantara F Khan S Guo Z Bard M Sturley SL 2000 Mutations in yeast ARV1 alter intracellular sterol distribution and are complemented by human ARV1 J Biol Chem 275 40667 40670
46. Trezeguet V Zeman I David C Lauquin GJ Kolarov J 1999 Expression of the ADP/ATP carrier encoding genes in aerobic yeasts; phenotype of an ADP/ATP carrier deletion mutant of Schizosaccharomyces pombe Biochim Biophys Acta 1410 229 236
47. Trotter PJ Hagerman RA Voelker DR 1999 A yeast strain defective in oleic acid utilization has a mutation in the RML2 gene Biochim Biophys Acta 1438 223 238
48. Visser W Scheffers WA Batenburg-van der Vegte WH van Dijken JP 1990 Oxygen requirements of yeasts Appl Environ Microbiol 56 3785 3792
49. Wesolowski-Louvel M Goffrini P Ferrero I Fukuhara H 1992 Glucose transport in the yeast Kluyveromyces lactis. I. Properties of an inducible low-affinity glucose transporter gene Mol Gen Genet 33 89 96
50. Wilcox LJ Balderes DA Wharton B Rao G Sturley SL 2002 Transcriptional profiling identifies two members of the ATP-binding cassette transporter superfamily required for sterol uptake in yeast J Biol Chem 277 32466 32472
51. Zitomer RS Lowry CV 1992 Regulation of gene expression by oxygen in Saccharomyces cerevisiae Microbiol Rev 56 1 11
52. Zonneveld BJM 1986 Cheap and simple yeast media J Microbiol Meth 4 287 291