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Volumn 26, Issue 8, 2006, Pages 3256-3265

Structure and function of the Saccharomyces cerevisiae Sir3 BAH domain

Author keywords

[No Author keywords available]

Indexed keywords

SILENT INFORMATION REGULATOR PROTEIN; SILENT INFORMATION REGULATOR PROTEIN 1; SILENT INFORMATION REGULATOR PROTEIN 2; SILENT INFORMATION REGULATOR PROTEIN 3; SILENT INFORMATION REGULATOR PROTEIN 4; UNCLASSIFIED DRUG;

EID: 33645832546     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.26.8.3256-3265.2006     Document Type: Article
Times cited : (53)

References (41)
  • 1
    • 0028832366 scopus 로고
    • The multidomain structure of Orc1p reveals similarity to regulators of DNA replication and transcriptional silencing
    • Bell, S. P., J. Mitchell, J. Leber, R. Kobayashi, and B. Stillman. 1995. The multidomain structure of Orc1p reveals similarity to regulators of DNA replication and transcriptional silencing. Cell 83:563-568.
    • (1995) Cell , vol.83 , pp. 563-568
    • Bell, S.P.1    Mitchell, J.2    Leber, J.3    Kobayashi, R.4    Stillman, B.5
  • 2
    • 0346725950 scopus 로고    scopus 로고
    • The origin recognition complex and Sir4 protein recruit Sir1p to yeast silent chromatin through independent interactions requiring a common Sir1p domain
    • Bose, M. E., K. H. McConnell, K. A. Gardner-Aukema, U. Muller, M. Weinreich, J. L. Keck, and C. A. Fox. 2004. The origin recognition complex and Sir4 protein recruit Sir1p to yeast silent chromatin through independent interactions requiring a common Sir1p domain. Mol. Cell. Biol. 24:774-786.
    • (2004) Mol. Cell. Biol. , vol.24 , pp. 774-786
    • Bose, M.E.1    McConnell, K.H.2    Gardner-Aukema, K.A.3    Muller, U.4    Weinreich, M.5    Keck, J.L.6    Fox, C.A.7
  • 4
    • 0032991918 scopus 로고    scopus 로고
    • The BAH (bromo-adjacent homology) domain: A link between DNA methylation, replication and transcriptional regulation
    • Callebaut, I., J. C. Courvalin, and J. P. Mornon. 1999. The BAH (bromo-adjacent homology) domain: a link between DNA methylation, replication and transcriptional regulation. FEBS Lett. 446:189-193.
    • (1999) FEBS Lett. , vol.446 , pp. 189-193
    • Callebaut, I.1    Courvalin, J.C.2    Mornon, J.P.3
  • 5
    • 0037085264 scopus 로고    scopus 로고
    • Acetylation of the yeast histone H4 N terminus regulates its binding to heterochromatin protein SIR3
    • Carmen, A. A., L. Milne, and M. Grunstein. 2002. Acetylation of the yeast histone H4 N terminus regulates its binding to heterochromatin protein SIR3. J. Biol. Chem. 277:4778-4781.
    • (2002) J. Biol. Chem. , vol.277 , pp. 4778-4781
    • Carmen, A.A.1    Milne, L.2    Grunstein, M.3
  • 6
    • 11844303478 scopus 로고    scopus 로고
    • Mechanism of transcriptional silencing in yeast
    • Chen, L., and J. Widom. 2005. Mechanism of transcriptional silencing in yeast. Cell 120:37-48.
    • (2005) Cell , vol.120 , pp. 37-48
    • Chen, L.1    Widom, J.2
  • 7
    • 0027443405 scopus 로고
    • Targeting of SIR1 protein establishes transcriptional silencing at HM loci and telomeres in yeast
    • Chien, C. T., S. Buck, R. Sternglanz, and D. Shore. 1993. Targeting of SIR1 protein establishes transcriptional silencing at HM loci and telomeres in yeast. Cell 75:531-541.
    • (1993) Cell , vol.75 , pp. 531-541
    • Chien, C.T.1    Buck, S.2    Sternglanz, R.3    Shore, D.4
  • 8
    • 77957027468 scopus 로고
    • Basic analysis of transcription factor binding to nucleosomes
    • Cote, J., R. T. Utley, and J. Workman. 1995. Basic analysis of transcription factor binding to nucleosomes. Methods Mol. Genet. 6:108-128.
    • (1995) Methods Mol. Genet. , vol.6 , pp. 108-128
    • Cote, J.1    Utley, R.T.2    Workman, J.3
  • 10
    • 0030003051 scopus 로고    scopus 로고
    • Repression domain of the yeast global repressor Tup1 interacts directly with histones H3 and H4
    • Edmondson, D. G., M. M. Smith, and S. Y. Roth. 1996. Repression domain of the yeast global repressor Tup1 interacts directly with histones H3 and H4. Genes Dev. 10:1247-1259.
    • (1996) Genes Dev. , vol.10 , pp. 1247-1259
    • Edmondson, D.G.1    Smith, M.M.2    Roth, S.Y.3
  • 11
    • 15744376691 scopus 로고    scopus 로고
    • Toward biochemical understanding of a transcriptionally silenced chromosomal domain in Saccharomyces cerevisiae
    • Fox, C. A., and K. H. McConnell. 2005. Toward biochemical understanding of a transcriptionally silenced chromosomal domain in Saccharomyces cerevisiae. J. Biol. Chem. 280:8629-8632.
    • (2005) J. Biol. Chem. , vol.280 , pp. 8629-8632
    • Fox, C.A.1    McConnell, K.H.2
  • 12
    • 0032944877 scopus 로고    scopus 로고
    • A region of the Sir1 protein dedicated to recognition of a silencer and required for interaction with the Orc1 protein in Saccharomyces cerevisiae
    • Gardner, K. A., J. Rine, and C. A. Fox. 1999. A region of the Sir1 protein dedicated to recognition of a silencer and required for interaction with the Orc1 protein in Saccharomyces cerevisiae. Genetics 151:31-44.
    • (1999) Genetics , vol.151 , pp. 31-44
    • Gardner, K.A.1    Rine, J.2    Fox, C.A.3
  • 13
    • 0035861202 scopus 로고    scopus 로고
    • The molecular biology of the SIR proteins
    • Gasser, S. M., and M. M. Cockell. 2001. The molecular biology of the SIR proteins. Gene 279:1-16.
    • (2001) Gene , vol.279 , pp. 1-16
    • Gasser, S.M.1    Cockell, M.M.2
  • 16
    • 0035881504 scopus 로고    scopus 로고
    • Sir2p exists in two nucleosome-binding complexes with distinct deacetylase activities
    • Ghidelli, S., D. Donze, N. Dhillon, and R. T. Kamakaka. 2001. Sir2p exists in two nucleosome-binding complexes with distinct deacetylase activities. EMBO J. 20:4522-4535.
    • (2001) EMBO J. , vol.20 , pp. 4522-4535
    • Ghidelli, S.1    Donze, D.2    Dhillon, N.3    Kamakaka, R.T.4
  • 17
    • 0031682736 scopus 로고    scopus 로고
    • Functional characterization of the N terminus of Sir3p
    • Gotta, M., F. Palladino, and S. M. Gasser. 1998. Functional characterization of the N terminus of Sir3p. Mol. Cell. Biol. 18:6110-6120.
    • (1998) Mol. Cell. Biol. , vol.18 , pp. 6110-6120
    • Gotta, M.1    Palladino, F.2    Gasser, S.M.3
  • 18
    • 20844445832 scopus 로고    scopus 로고
    • Structural basis of the Sir1-origin recognition complex interaction in transcriptional silencing
    • Hou, Z., D. A. Bernstein, C. A. Fox, and J. L. Keck. 2005. Structural basis of the Sir1-origin recognition complex interaction in transcriptional silencing. Proc. Natl. Acad. Sci. USA 102:8489-8494.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 8489-8494
    • Hou, Z.1    Bernstein, D.A.2    Fox, C.A.3    Keck, J.L.4
  • 19
    • 20844453952 scopus 로고    scopus 로고
    • Structural basis for origin recognition complex 1 protein-silence information regulator 1 protein interaction in epigenetic silencing
    • Hsu, H. C., B. Stillman, and R. M. Xu. 2005. Structural basis for origin recognition complex 1 protein-silence information regulator 1 protein interaction in epigenetic silencing. Proc. Natl. Acad. Sci. USA 102:8519-8524.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 8519-8524
    • Hsu, H.C.1    Stillman, B.2    Xu, R.M.3
  • 20
    • 0025002966 scopus 로고
    • Genetic evidence for an interaction between SIR3 and histone H4 in the repression of the silent mating loci in Saccharomyces cerevisiae
    • Johnson, L. M., P. S. Kayne, E. S. Kahn, and M. Grunstein. 1990. Genetic evidence for an interaction between SIR3 and histone H4 in the repression of the silent mating loci in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 87:6286-6290.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 6286-6290
    • Johnson, L.M.1    Kayne, P.S.2    Kahn, E.S.3    Grunstein, M.4
  • 21
    • 84889120137 scopus 로고
    • Improved methods for building protein models in electron density maps and the location of errors in these models
    • Jones, T. A., J. Y. Zou, S. W. Cowan, and M. Kjeldgaard. 1991. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A 47:110-119.
    • (1991) Acta Crystallogr. A , vol.47 , pp. 110-119
    • Jones, T.A.1    Zou, J.Y.2    Cowan, S.W.3    Kjeldgaard, M.4
  • 22
    • 0024280881 scopus 로고
    • Extremely conserved histone H4 N terminus is dispensable for growth but essential for repressing the silent mating loci in yeast
    • Kayne, P. S., U. J. Kim, M. Han, J. R. Mullen, F. Yoshizaki, and M. Grunstein. 1988. Extremely conserved histone H4 N terminus is dispensable for growth but essential for repressing the silent mating loci in yeast. Cell 55:27-39.
    • (1988) Cell , vol.55 , pp. 27-39
    • Kayne, P.S.1    Kim, U.J.2    Han, M.3    Mullen, J.R.4    Yoshizaki, F.5    Grunstein, M.6
  • 23
    • 0030862060 scopus 로고    scopus 로고
    • Two new S-phase-specific genes from Saccharomyces cerevisiae
    • Le, S., C. Davis, J. B. Konopka, and R. Sternglanz. 1997. Two new S-phase-specific genes from Saccharomyces cerevisiae. Yeast 13:1029-1042.
    • (1997) Yeast , vol.13 , pp. 1029-1042
    • Le, S.1    Davis, C.2    Konopka, J.B.3    Sternglanz, R.4
  • 24
    • 0034934774 scopus 로고    scopus 로고
    • Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association
    • Lieb, J. D., X. Liu, D. Botstein, and P. O. Brown. 2001. Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association. Nat. Genet. 28:327-334.
    • (2001) Nat. Genet. , vol.28 , pp. 327-334
    • Lieb, J.D.1    Liu, X.2    Botstein, D.3    Brown, P.O.4
  • 25
    • 19344377042 scopus 로고    scopus 로고
    • Assembly of the SIR complex and its regulation by O-acetyl-ADP-ribose, a product of NAD-dependent histone deacetylation
    • Liou, G. G., J. C. Tanny, R. G. Kruger, T. Walz, and D. Moazed. 2005. Assembly of the SIR complex and its regulation by O-acetyl-ADP-ribose, a product of NAD-dependent histone deacetylation. Cell 121:515-527.
    • (2005) Cell , vol.121 , pp. 515-527
    • Liou, G.G.1    Tanny, J.C.2    Kruger, R.G.3    Walz, T.4    Moazed, D.5
  • 26
    • 0030009208 scopus 로고    scopus 로고
    • Genetic analysis of Rap1p/Sir3p interactions in telomeric and HML silencing in Saccharomyces cerevisiae
    • Liu, C., and A. J. Lustig. 1996. Genetic analysis of Rap1p/Sir3p interactions in telomeric and HML silencing in Saccharomyces cerevisiae. Genetics 143: 81-93.
    • (1996) Genetics , vol.143 , pp. 81-93
    • Liu, C.1    Lustig, A.J.2
  • 27
    • 0031820288 scopus 로고    scopus 로고
    • Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae
    • Longtine, M. S., A. McKenzie III, D. J. Demarini, N. G. Shah, A. Wach, A. Brachat, P. Philippsen, and J. R. Pringle. 1998. Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast 14:953-961.
    • (1998) Yeast , vol.14 , pp. 953-961
    • Longtine, M.S.1    McKenzie III, A.2    Demarini, D.J.3    Shah, N.G.4    Wach, A.5    Brachat, A.6    Philippsen, P.7    Pringle, J.R.8
  • 28
    • 1842411320 scopus 로고    scopus 로고
    • Crystal structure of the nucleosome core particle at 2.8 A resolution
    • Luger, K., A. W. Mader, R. K. Richmond, D. F. Sargent, and T. J. Richmond. 1997. Crystal structure of the nucleosome core particle at 2.8 A resolution. Nature 389:251-260.
    • (1997) Nature , vol.389 , pp. 251-260
    • Luger, K.1    Mader, A.W.2    Richmond, R.K.3    Sargent, D.F.4    Richmond, T.J.5
  • 29
    • 0028953840 scopus 로고
    • Yeast vectors for the controlled expression of heterologous proteins in different genetic backgrounds
    • Mumberg, D., R. Muller, and M. Funk. 1995. Yeast vectors for the controlled expression of heterologous proteins in different genetic backgrounds. Gene 156:119-122.
    • (1995) Gene , vol.156 , pp. 119-122
    • Mumberg, D.1    Muller, R.2    Funk, M.3
  • 30
    • 0035788101 scopus 로고    scopus 로고
    • Implementation of molecular replacement in AMoRe
    • Navaza, J. 2001. Implementation of molecular replacement in AMoRe. Acta Crystallogr. D Biol. Crystallogr. 57:1367-1372.
    • (2001) Acta Crystallogr. D Biol. Crystallogr. , vol.57 , pp. 1367-1372
    • Navaza, J.1
  • 31
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • Otwinowski, Z., and W. Minor. 1997. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276:307-326.
    • (1997) Methods Enzymol. , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 32
    • 0031737958 scopus 로고    scopus 로고
    • Sir3p domains involved in the initiation of telomeric silencing in Saccharomyces cerevisiae
    • Park, Y., J. Hanish, and A. J. Lustig. 1998. Sir3p domains involved in the initiation of telomeric silencing in Saccharomyces cerevisiae. Genetics 150: 977-986.
    • (1998) Genetics , vol.150 , pp. 977-986
    • Park, Y.1    Hanish, J.2    Lustig, A.J.3
  • 33
    • 0037636027 scopus 로고    scopus 로고
    • The establishment, inheritance, and function of silenced chromatin in Saccharomyces cerevisiae
    • Rusche, L. N., A. L. Kirchmaier, and J. Rine. 2003. The establishment, inheritance, and function of silenced chromatin in Saccharomyces cerevisiae. Annu. Rev. Biochem. 72:481-516.
    • (2003) Annu. Rev. Biochem. , vol.72 , pp. 481-516
    • Rusche, L.N.1    Kirchmaier, A.L.2    Rine, J.3
  • 34
    • 0035805063 scopus 로고    scopus 로고
    • Silenced chromatin is permissive to activator binding and PIC recruitment
    • Sekinger, E. A., and D. S. Gross. 2001. Silenced chromatin is permissive to activator binding and PIC recruitment. Cell 105:403-414.
    • (2001) Cell , vol.105 , pp. 403-414
    • Sekinger, E.A.1    Gross, D.S.2
  • 35
    • 0034046081 scopus 로고    scopus 로고
    • Two classes of sir3 mutants enhance the sir1 mutant mating defect and abolish telomeric silencing in Saccharomyces cerevisiae
    • Stone, E. M., C. Reifsnyder, M. McVey, B. Gazo, and L. Pillus. 2000. Two classes of sir3 mutants enhance the sir1 mutant mating defect and abolish telomeric silencing in Saccharomyces cerevisiae. Genetics 155:509-522.
    • (2000) Genetics , vol.155 , pp. 509-522
    • Stone, E.M.1    Reifsnyder, C.2    McVey, M.3    Gazo, B.4    Pillus, L.5
  • 36
    • 0026061252 scopus 로고
    • The SIR1 gene of Saccharomyces cerevisiae and its role as an extragenic suppressor of several mating-defective mutants
    • Stone, E. M., M. J. Swanson, A. M. Romeo, J. B. Hicks, and R. Sternglanz. 1991. The SIR1 gene of Saccharomyces cerevisiae and its role as an extragenic suppressor of several mating-defective mutants. Mol. Cell. Biol. 11:2253-2262.
    • (1991) Mol. Cell. Biol. , vol.11 , pp. 2253-2262
    • Stone, E.M.1    Swanson, M.J.2    Romeo, A.M.3    Hicks, J.B.4    Sternglanz, R.5
  • 37
    • 0037277984 scopus 로고    scopus 로고
    • Identification of a functional domain within the essential core of histone H3 that is required for telomeric and HM silencing in Saccharomyces cerevisiae
    • Thompson, J. S., M. L. Snow, S. Giles, L. E. McPherson, and M. Grunstein. 2003. Identification of a functional domain within the essential core of histone H3 that is required for telomeric and HM silencing in Saccharomyces cerevisiae. Genetics 163:447-452.
    • (2003) Genetics , vol.163 , pp. 447-452
    • Thompson, J.S.1    Snow, M.L.2    Giles, S.3    McPherson, L.E.4    Grunstein, M.5
  • 38
    • 0029922959 scopus 로고    scopus 로고
    • Role of interactions between the origin recognition complex and SIR1 in transcriptional silencing
    • Triolo, T., and R. Sternglanz. 1996. Role of interactions between the origin recognition complex and SIR1 in transcriptional silencing. Nature 381:251-253.
    • (1996) Nature , vol.381 , pp. 251-253
    • Triolo, T.1    Sternglanz, R.2
  • 39
    • 5144232518 scopus 로고    scopus 로고
    • Importance of the Sir3 N terminus and its acetylation for yeast transcriptional silencing
    • Wang, X., J. J. Connelly, C. L. Wang, and R. Sternglanz. 2004. Importance of the Sir3 N terminus and its acetylation for yeast transcriptional silencing. Genetics 168:547-551.
    • (2004) Genetics , vol.168 , pp. 547-551
    • Wang, X.1    Connelly, J.J.2    Wang, C.L.3    Sternglanz, R.4
  • 40
    • 0037009519 scopus 로고    scopus 로고
    • Structure and function of the BAH-containing domain of Orc1p in epigenetic silencing
    • Zhang, Z., M. K. Hayashi, O. Merkel, B. Stillman, and R. M. Xu. 2002. Structure and function of the BAH-containing domain of Orc1p in epigenetic silencing. EMBO J. 21:4600-4611.
    • (2002) EMBO J. , vol.21 , pp. 4600-4611
    • Zhang, Z.1    Hayashi, M.K.2    Merkel, O.3    Stillman, B.4    Xu, R.M.5
  • 41
    • 0034623161 scopus 로고    scopus 로고
    • Heterochromatin protein 1 binds to nucleosomes and DNA in vitro
    • Zhao, T., T. Heyduk, C. D. Allis, and J. C. Eissenberg. 2000. Heterochromatin protein 1 binds to nucleosomes and DNA in vitro. J. Biol. Chem. 275:28332-28338.
    • (2000) J. Biol. Chem. , vol.275 , pp. 28332-28338
    • Zhao, T.1    Heyduk, T.2    Allis, C.D.3    Eissenberg, J.C.4


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