Isolation and characterisation of main olfactory and vomeronasal receptor gene families from the Atlantic salmon (Salmo salar)

Gene

Volumn 371, Issue 2, 2006, Pages 257-267

  Dukes, Juliet P ^a   Deaville, Robert ^a   Gottelli, Dada ^a   Neigel, Joseph E ^b   Bruford, Michael W ^c   Jordan, William C ^a  

^a INSTITUTE OF ZOOLOGY   (United Kingdom)

^b UNIVERSITY OF LOUISIANA AT LAFAYETTE   (United States)

^c CARDIFF UNIVERSITY   (United Kingdom)

Author keywords

Gene expression; Molecular evolution; Odorant receptors; Pseudogenes

Indexed keywords

CALCIUM SENSING RECEPTOR;

AMINO ACID SEQUENCE; ARTICLE; ATLANTIC SALMON; BIOLOGY; CLUSTER ANALYSIS; FISH; GENE AMPLIFICATION; GENE EXPRESSION; GENE IDENTIFICATION; GENE ISOLATION; GENE SEQUENCE; GENETIC TRANSCRIPTION; GENOMICS; KIDNEY; MULTIGENE FAMILY; NONHUMAN; NUCLEOTIDE SEQUENCE; OLFACTORY EPITHELIUM; OLFACTORY RECEPTOR; OPEN READING FRAME; PHYLOGENY; PRIORITY JOURNAL; PSEUDOGENE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SMELLING; STOP CODON; TESTIS; VERTEBRATE; VOMERONASAL ORGAN;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CLONING, MOLECULAR; DNA PRIMERS; OLFACTORY MUCOSA; PHYLOGENY; POLYMERASE CHAIN REACTION; PSEUDOGENES; SALMO SALAR; SEQUENCE HOMOLOGY, AMINO ACID; VOMERONASAL ORGAN;

PORZANA CAROLINA; SALMO SALAR; SASA; VERTEBRATA;

EID: 33645796722     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2005.12.003     Document Type: Article

References (59)

1. Altschul S.F., et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25 (1997) 3389-3402
2. Asano-Miyoshi M., et al. Random expression of main and vomeronasal olfactory receptor genes in immature and mature olfactory epithelia of Fugu rubripes. J. Biochem. 127 (2000) 915-924
3. Bargmann C.I. Olfactory receptors, vomeronasal receptors, and the organization of olfactory information. Cell 90 (1997) 585-587
4. Barth A.L., Justice N.J., and Ngai J. Asynchronous onset of odorant receptor expression in the developing zebrafish olfactory system. Neuron 16 (1996) 23-34
5. Bjarnadottir T., Fredriksson R., and Schioth H.B. The gene repertoire and the common evolutionary history of glutamate, pheromone (V2R), taste(1) and other related G protein-coupled receptors. Gene 362 (2005) 70-84
6. Branscomb A., Seger J., and White R.L. Evolution of odorant receptors expressed in mammalian testes. Genetics 156 (2000) 785-797
7. Buck L., and Axel R. A novel multigene family may encode odorant receptors: a molecular basis for odor recognition. Cell 65 (1991) 175-187
8. Byrd C.A., Jones J.T., Quattro J.M., Rogers M.E., Brunjes P.C., and Vogt R.G. Ontogeny of odorant receptor gene expression in zebrafish, Danio rerio. J. Neurobiol. 29 (1996) 445-458
9. Cao Y., Oh B.C., and Stryer L. Cloning and localization of two multigene receptor families in goldfish olfactory epithelium. Proc. Natl. Acad. Sci. U. S. A. 95 (1998) 11987-11992
10. Chenna R., et al. Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res. 31 (2003) 3497-3500
11. Chess A., Simon I., Cedar H., and Axel R. Allelic inactivation regulates olfactory receptor gene expression. Cell 78 (1994) 823-834
12. Consuegra S., Megens H.-J., Leon K., Stet R.J.M., and Jordan W.C. Patterns of variation at the MH class II alpha locus in Atlantic salmon contrast with those at the class I locus. Immunogenetics 57 (2005) 16-24
13. Consuegra S., Megens H.-J., Schaschl H., Leon K., Stet R.J.M., and Jordan W.C. Rapid evolution of the MH class I locus results in different allelic compositions in recently diverged populations of Atlantic Salmon. Mol. Biol. Evol. 22 (2005) 1095-1106
14. Dittman A.H., and Quinn T.P. Homing in Pacific salmon: mechanisms and ecological basis. J. Exp. Biol. 199 (1996) 83-91
15. Dugas J.C., and Ngai J. Analysis and characterization of an odorant receptor gene cluster in the zebrafish genome. Genomics 71 (2001) 53-65
16. Dulac C., and Axel R. A novel family of genes encoding putative pheromone receptors in mammals. Cell 83 (1995) 195-206
17. Dukes J.P., Deaville R., Bruford M.W., Youngson A.F., and Jordan W.C. Odorant receptor gene expression changes during the parr-smolt transformation in Atlantic salmon. Mol. Ecol. 13 (2004) 2851-2857
18. Firestein S. How the olfactory system makes sense of scents. Nature 413 (2001) 211-218
19. Flanagan J.A., et al. Cloning of the cDNA for the putative calcium-sensing receptor and its tissue distribution in sea bream (Sparus aurata). Gen. Comp. Endocrinol. 127 (2002) 117-127
20. Freitag J., Kreiger J., Strotmann J., and Breer H. Two classes of olfactory receptors in Xenopus laevis. Neuron 15 (1995) 1383-1392
21. Freitag J., Ludwig G., Andreini I., Rössler P., and Breer H. Olfactory receptors in aquatic and terrestrial vertebrates. J. Comp. Physiol. 183 (1998) 635-650
22. Garrett J.E., et al. Molecular cloning and functional expression of human parathyroid calcium receptor cDNAs. J. Biol. Chem. 270 (1995) 12919-12925
23. Gilad Y., Wiebe V., Przeworski M., Lancet D., and Pääbo S. Loss of olfactory receptor genes coincides with the acquisition of full trichromatic vision in primates. PLOS Biology 2 (2004) 0120-0125
24. Hagino-Yamagashi K., et al. Expression of vomeronasal receptor genes in Xenopus laevis. J. Comp. Neurol. 472 (2004) 246-256
25. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Symp. Ser. 41 (1999) 95-98
26. Hallam E.A., and Carlson J.R. The odor coding system of Drosophila. Trends Genet. 20 (2004) 453-459
27. Hara T.J. Fish Chemoreception (1992), Chapman and Hall, London
28. Herrada G., and Dulac C. A novel family of putative pheromone receptors in mammals with a topographically organised and sexually dimorphic distribution. Cell 90 (1997) 763-773
29. Irie-Kushiyama S., Asano-Miyoshi M., Suda T., Abe K., and Emori Y. Identification of 24 genes and two pseudogenes coding for olfactory receptors in the Japanese loach, classified into four subfamilies: a putative evolutionary process for fish olfactory receptor genes by comprehensive phylogenetic analysis. Gene 325 (2004) 123-135
30. Korsching S.I. Odor maps in the brain: spatial aspects of odor representation in sensory surface and olfactory bulb. Cell. Mol. Life Sci. 58 (2001) 520-530
31. 2+ sensing receptor with truncated C-terminal tail from the Mozambique tilapia (Oreochromis mossambicus). J. Biol. Chem. 279 (2004) 53288-53297
32. Luo M., and Katz L.C. Encoding pheromonal signals in the mammalian vomeronasal system. Curr. Opin. Neurobiol. 14 (2004) 428-434
33. Matsunami H., and Buck L. A multigene family encoding a diverse array of putative pheromone receptors in mammals. Cell 90 (1997) 775-784
34. Mombaerts P. Molecular biology of odorant receptors in vertebrates. Annu. Rev. Neurosci. 22 (1999) 487-509
35. Montmayeur J.P., Liberles S.D., Matsunami H., and Buck L.B. A candidate taste receptor gene near a sweet taste locus. Nat. Neurosci. 4 (2001) 492-498
36. 2+-sensing receptor in Fugu. Proc. Natl. Acad. Sci. U. S. A. 95 (1998) 5178-5181
37. Nelson G., Hoon M.A., Chandrashekar J., Zhang Y., Ryba N.J., and Zuker C.S. Mammalian sweet taste receptors. Cell 106 (2001) 381-390
38. Nevitt G.A., Dittman A.H., Quinn T.P., and Moody W.J. Evidence for a peripheral olfactory memory in imprinted salmon. Proc. Natl. Acad. Sci. U. S. A. 91 (1994) 4288-4292
39. Ngai J., Dowling M.M., Buck L., Axel R., and Chess A. The family of genes encoding odorant receptors in the channel catfish. Cell 72 (1993) 657-666
40. Niimura Y., and Nei M. Evolutionary dynamics of olfactory receptor genes in fishes and tetrapods. Proc. Natl. Acad. Sci., U. S. A 102 (2005) 6039-6044
41. Page R.D.M. TREEVIEW: an application to display phylogenetic trees on personal computers. Comp. Appl. Biosci. 12 (1996) 357-358
42. Pantages E., and Dulac C. A novel family of candidate pheromone receptors in mammals. Neuron 28 (2000) 835-845
43. Pfister P., and Rodriguez I. Olfactory expression of a single and highly variable V1r pheromone-like receptor gene in fish species. Proc. Natl. Acad. Sci., U. S. A 102 (2005) 5489-5494
44. Restrepo D., Arellano J., Oliva A.M., Schaefer M.L., and Lin W. Emerging views on the distinct but related roles of the main and accessory olfactory systems in responsiveness to chemosensory signals in mice. Horm. Behav. 46 (2004) 247-256
45. Riccardi D., Park J., Lee W.S., Gamba G., Brown E.M., and Hebert S.C. Cloning and functional expression of a rat kidney extracellular calcium/polyvalent cation-sensing receptor. Proc. Natl. Acad. Sci. U. S. A. 92 (1995) 131-135
46. Rodriguez I., Del Punta K., Rothman A., Ishii T., and Mombaerts P. Multiple new and isolated families within the mouse superfamily of V1r vomeronasal receptors. Nat. Neurosci. 5 (2002) 134-140
47. Ryba N.J.P., and Tirindelli R. A new multigene family of putative pheromone receptors. Neuron 19 (1997) 371-379
48. Sambrook J., Fritsch E.F., and Maniatis T. Molecular Cloning: A Laboratory Manual. 2nd edition (1989), Cold Spring Harbor Laboratory Press, Cold Spring Harbor
49. Serizawa S., et al. Negative feedback regulation ensures the one receptor-one olfactory neuron rule in mouse. Science 302 (2003) 2088-2094
50. Speca D.J., Lin D.M., Sorensen P.W., Isacoff E.Y., Ngai J., and Dittman A.H. Functional identification of a goldfish odorant receptor. Neuron 23 (1999) 487-498
51. Spehr M., Schwane K., Heilmann S., Gisselmann G., Hummel T., and Hatt H. Dual capacity of a human olfactory receptor. Curr. Biol. 14 (2004) R832-R833
52. Sun H., Kondo R., Shima A., Naruse K., Hori H., and Chigusa S.I. Evolutionary analysis of putative olfactory receptor genes of medaka fish, Oryzias latipes. Gene 231 (1999) 137-145
53. Swofford D.L. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4 (2002), Sinauer Associates, Sunderland, Massachusetts
54. Walensky L.D., Ruat M., Bakin R.E., Blackshaw S., Ronnett G.V., and Snyder S.H. Two novel odorant receptor families expressed in spermatids undergo 5′-splicing. J. Biol. Chem. 273 (1998) 9378-9387
55. Weth F., Nadler W., and Korsching S. Nested expression domains for odorant receptors in zebrafish olfactory epithelium. Proc. Natl. Acad. Sci. U. S. A. 93 (1996) 13321-13326
56. Wickens A., May D., and Rand-Weaver M. Molecular characterisation of a putative Atlantic salmon (Salmo salar) odorant receptor. Comp. Biochem. Physiol., B 129 (2001) 653-660
57. Yang H., Shi P., Zhang Y., and Zhang J. Composition and evolution of the V2r vomeronasal receptor gene repertoire in mice and rats. Genomics 86 (2005) 306-315
58. Yasuoka A., Endo K., Asano-Miyoshi M., Abe K., and Emori Y. Two subfamilies of olfactory receptor genes in medaka fish, Oryzias lapites: genomic organization and differential expression in olfactory epithelium. J. Biochem. 126 (1999) 866-873
59. Zhang J., and Webb D.M. Evolutionary deterioration of the vomeronasal pheromone transduction pathway in catarrhine primates. Proc. Natl. Acad. Sci. U. S. A. 100 (2003) 8337-8341