-
1
-
-
0242267499
-
-
Č. Venclovas, A. Zemla, K. Fidelis, and J. Moult, Proteins: Struct., Funct., Genet. 53, 585 (2003).
-
(2003)
Proteins: Struct., Funct., Genet.
, vol.53
, pp. 585
-
-
Venclovas, Č.1
Zemla, A.2
Fidelis, K.3
Moult, J.4
-
5
-
-
0023305986
-
-
T. L. Blundell, B. L. Sibanda, M. J. Sternberg, and J. M. Thornton, Nature (London) 326, 347 (1987).
-
(1987)
Nature (London)
, vol.326
, pp. 347
-
-
Blundell, T.L.1
Sibanda, B.L.2
Sternberg, M.J.3
Thornton, J.M.4
-
14
-
-
0000095892
-
-
A. Liwo, S. Ołdziej, M. R. Pincus, R. J. Wawak, S. Rackovsky, and H. A. Scheraga, J. Comput. Chem. 18, 849 (1997).
-
(1997)
J. Comput. Chem.
, vol.18
, pp. 849
-
-
Liwo, A.1
Ołdziej, S.2
Pincus, M.R.3
Wawak, R.J.4
Rackovsky, S.5
Scheraga, H.A.6
-
15
-
-
0000095890
-
-
A. Liwo, M. R. Pincus, R. J. Wawak, S. Rackovsky, S. Ołdziej, and H. A. Scheraga, J. Comput. Chem. 18, 874 (1997).
-
(1997)
J. Comput. Chem.
, vol.18
, pp. 874
-
-
Liwo, A.1
Pincus, M.R.2
Wawak, R.J.3
Rackovsky, S.4
Ołdziej, S.5
Scheraga, H.A.6
-
16
-
-
0001181898
-
-
A. Liwo, R. Kaźmierkiewicz, C. Czaplewski, M. Groth, S. Oldziej, R. J. Wawak, S. Rackovsky, M. R. Pincus, and H. A. Scheraga, J. Comput. Chem. 19, 259 (1998).
-
(1998)
J. Comput. Chem.
, vol.19
, pp. 259
-
-
Liwo, A.1
Kaźmierkiewicz, R.2
Czaplewski, C.3
Groth, M.4
Oldziej, S.5
Wawak, R.J.6
Rackovsky, S.7
Pincus, M.R.8
Scheraga, H.A.9
-
25
-
-
0033411289
-
-
A. Liwo, J. Pillardy, R. Kaźmierkiewicz, R. J. Wawak, M. Groth, C. Czaplewski, S. Oldziej, and H. A. Scheraga, Theor. Chem. Acc. 101, 16 (1999).
-
(1999)
Theor. Chem. Acc.
, vol.101
, pp. 16
-
-
Liwo, A.1
Pillardy, J.2
Kaźmierkiewicz, R.3
Wawak, R.J.4
Groth, M.5
Czaplewski, C.6
Oldziej, S.7
Scheraga, H.A.8
-
30
-
-
0035342435
-
-
N. Gibbs, A. R. Clarke, and R. B. Sessions, Proteins: Struct., Funct., Genet. 43, 186 (2001).
-
(2001)
Proteins: Struct., Funct., Genet.
, vol.43
, pp. 186
-
-
Gibbs, N.1
Clarke, A.R.2
Sessions, R.B.3
-
31
-
-
84953648015
-
-
A. P. Lyubartsev, A. A. Martinovski, S. V. Shevkunov, and P. N. Vorontsov-Velyaminov, J. Chem. Phys. 96, 1776 (1992).
-
(1992)
J. Chem. Phys.
, vol.96
, pp. 1776
-
-
Lyubartsev, A.P.1
Martinovski, A.A.2
Shevkunov, S.V.3
Vorontsov-Velyaminov, P.N.4
-
33
-
-
0036568327
-
-
G. Favrin, A. Irbäck, and S. Wallin, Proteins: Struct., Funct., Genet. 47, 99 (2002).
-
(2002)
Proteins: Struct., Funct., Genet.
, vol.47
, pp. 99
-
-
Favrin, G.1
Irbäck, A.2
Wallin, S.3
-
36
-
-
0042171838
-
-
C.-Y. Lin, C.-K. Hu, and U. H. E. Hansmann, Proteins: Struct., Funct., Genet. 52, 436 (2003).
-
(2003)
Proteins: Struct., Funct., Genet.
, vol.52
, pp. 436
-
-
Lin, C.-Y.1
Hu, C.-K.2
Hansmann, U.H.E.3
-
37
-
-
0036137805
-
-
Y. Liu and D. L. Beveridge, Proteins: Struct., Funct., Genet. 46, 128 (2002).
-
(2002)
Proteins: Struct., Funct., Genet.
, vol.46
, pp. 128
-
-
Liu, Y.1
Beveridge, D.L.2
-
42
-
-
0035964191
-
-
D. Kihara, H. Lu, A. Kolinski, and J. Skolnick, Proc. Natl. Acad. Sci. U.S.A. 98, 10125 (2001).
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 10125
-
-
Kihara, D.1
Lu, H.2
Kolinski, A.3
Skolnick, J.4
-
43
-
-
0031585984
-
-
K. T. Simons, C. Koopberg, E. Huang, and D. Baker, J. Mol. Biol. 268, 209 (1997).
-
(1997)
J. Mol. Biol.
, vol.268
, pp. 209
-
-
Simons, K.T.1
Koopberg, C.2
Huang, E.3
Baker, D.4
-
44
-
-
0036219887
-
-
S. Crivelli, E. Eskow, B. Bader, V. Lamberti, R. H. Byrd, R. Schnabel, and T. Head-Gordon, Biophys. J. 82, 36 (2002).
-
(2002)
Biophys. J.
, vol.82
, pp. 36
-
-
Crivelli, S.1
Eskow, E.2
Bader, B.3
Lamberti, V.4
Byrd, R.H.5
Schnabel, R.6
Head-Gordon, T.7
-
52
-
-
0346665548
-
-
A. Fernández, M.-Y. Shen, A. Colubri, T. R. Sosnick, R. S. Berry, and K. F. Freed, Biochemistry 42, 664 (2003).
-
(2003)
Biochemistry
, vol.42
, pp. 664
-
-
Fernández, A.1
Shen, M.-Y.2
Colubri, A.3
Sosnick, T.R.4
Berry, R.S.5
Freed, K.F.6
-
54
-
-
0033954256
-
-
H. M. Berman, J. Westbrook, Z. Feng, G. Gilliland, T. N. Bhat, H. Weissig, I. N. Shindyalov, and P. E. Bourne, Nucleic Acids Res. 28, 235 (2000); the Protein Data Bank home page is http://www.rcsb.org/pdb
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
55
-
-
0033954256
-
-
H. M. Berman, J. Westbrook, Z. Feng, G. Gilliland, T. N. Bhat, H. Weissig, I. N. Shindyalov, and P. E. Bourne, Nucleic Acids Res. 28, 235 (2000); the Protein Data Bank home page is http://www.rcsb.org/pdb
-
-
-
-
57
-
-
14744302714
-
-
M. Buscaglia, J. Kubelka, W. A. Eaton, and J. Hofrichter, J. Mol. Biol. 347, 657 (2005).
-
(2005)
J. Mol. Biol.
, vol.347
, pp. 657
-
-
Buscaglia, M.1
Kubelka, J.2
Eaton, W.A.3
Hofrichter, J.4
-
58
-
-
0038288925
-
-
M. Wang, Y. Tang, S. Sato, L. Vugmeyster, C. J. McKnight, and D. P. Raleigh, J. Am. Chem. Soc. 125, 6032 (2003).
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 6032
-
-
Wang, M.1
Tang, Y.2
Sato, S.3
Vugmeyster, L.4
McKnight, C.J.5
Raleigh, D.P.6
-
61
-
-
0034212858
-
-
M. R. Lee, Y. Duan, and P. A. Kollman, Proteins: Struct., Funct., Genet. 39, 309 (2000).
-
(2000)
Proteins: Struct., Funct., Genet.
, vol.39
, pp. 309
-
-
Lee, M.R.1
Duan, Y.2
Kollman, P.A.3
-
63
-
-
0036892356
-
-
M. Y. Shen and K. F. Freed, Proteins: Struct., Funct., Genet. 49, 439 (2002).
-
(2002)
Proteins: Struct., Funct., Genet.
, vol.49
, pp. 439
-
-
Shen, M.Y.1
Freed, K.F.2
-
64
-
-
1942455284
-
-
E. Z. Wen, M.-J. Hsieh, P. A. Kollman, and R. Luo, J. Mol. Graphics Modell. 22, 415 (2004).
-
(2004)
J. Mol. Graphics Modell.
, vol.22
, pp. 415
-
-
Wen, E.Z.1
Hsieh, M.-J.2
Kollman, P.A.3
Luo, R.4
-
65
-
-
0345724787
-
-
S. Jang, E. Kim, S. Shin, and Y. Pak, J. Am. Chem. Soc. 125, 14841 (2003).
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 14841
-
-
Jang, S.1
Kim, E.2
Shin, S.3
Pak, Y.4
-
70
-
-
0036428782
-
-
B. Zagrovic, C. D. Snow, M. R. Shirts, and V. Pande, J. Mol. Biol. 323, 927 (2002).
-
(2002)
J. Mol. Biol.
, vol.323
, pp. 927
-
-
Zagrovic, B.1
Snow, C.D.2
Shirts, M.R.3
Pande, V.4
-
74
-
-
0037478676
-
-
E. Paci, A. Cavalli, M. Vendruscolo, and A. Caflish, Proc. Natl. Acad. Sci. U.S.A. 100, 8217 (2003).
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 8217
-
-
Paci, E.1
Cavalli, A.2
Vendruscolo, M.3
Caflish, A.4
-
75
-
-
0033545962
-
-
A. Liwo, J. Lee, D. R. Ripoll, J. Pillardy, and H. A. Scheraga, Proc. Natl. Acad. Sci. U.S.A. 96, 5482 (1999).
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 5482
-
-
Liwo, A.1
Lee, J.2
Ripoll, D.R.3
Pillardy, J.4
Scheraga, H.A.5
-
78
-
-
0028177676
-
-
T. J. Oldfield and R. E. Hubbard, Proteins: Struct., Funct., Genet. 18, 324 (1994).
-
(1994)
Proteins: Struct., Funct., Genet.
, vol.18
, pp. 324
-
-
Oldfield, T.J.1
Hubbard, R.E.2
-
82
-
-
0042797442
-
-
Cambridge University Press, Cambridge
-
D. J. Wales, Energy Landscapes (Cambridge University Press, Cambridge, 2003).
-
(2003)
Energy Landscapes
-
-
Wales, D.J.1
-
84
-
-
0000729781
-
-
C. Dellago, P. G. Bolhuis, F. S. Csajka, and D. Chandler, J. Chem. Phys. 108, 1964 (1998).
-
(1998)
J. Chem. Phys.
, vol.108
, pp. 1964
-
-
Dellago, C.1
Bolhuis, P.G.2
Csajka, F.S.3
Chandler, D.4
-
86
-
-
0036424048
-
-
P. G. Bolhuis, D. Chandler, C. Dellago, and P. L. Geissler, Annu. Rev. Phys. Chem. 53, 291 (2002).
-
(2002)
Annu. Rev. Phys. Chem.
, vol.53
, pp. 291
-
-
Bolhuis, P.G.1
Chandler, D.2
Dellago, C.3
Geissler, P.L.4
-
98
-
-
0004003691
-
-
Dover, New York
-
E. B. Wilson, Jr., J. C. Decius, and P. C. Cross, Molecular Vibrations (Dover, New York, 1955).
-
(1955)
Molecular Vibrations
-
-
Wilson Jr., E.B.1
Decius, J.C.2
Cross, P.C.3
-
107
-
-
0004236492
-
-
3rd ed. (John Hopkins University Press, Baltimore, MD
-
G. H. Golub and C. F. van Loan, Matrix Computations, 3rd ed. (John Hopkins University Press, Baltimore, MD, 1996).
-
(1996)
Matrix Computations
-
-
Golub, G.H.1
Van Loan, C.F.2
-
108
-
-
0004161838
-
-
2nd ed. (Cambridge University Press, Cambridge, England
-
W. Press, B. Flannery, S. Teukolsky, and W. Vetterling, Numerical Recipes in FORTRAN. The Art of Scientific Computing, 2nd ed. (Cambridge University Press, Cambridge, England, 1992), pp. 866-869.
-
(1992)
Numerical Recipes in FORTRAN. the Art of Scientific Computing
, pp. 866-869
-
-
Press, W.1
Flannery, B.2
Teukolsky, S.3
Vetterling, W.4
-
110
-
-
0041814016
-
-
The Scripps Research Institute, San Diego, CA
-
M. Feig, J. Karanicolas, and C. L. Brooks III, MMTSB Tool Set, MMTSB NIH Research Resource., The Scripps Research Institute, San Diego, CA, 2001.
-
(2001)
MMTSB Tool Set, MMTSB NIH Research Resource
-
-
Feig, M.1
Karanicolas, J.2
Brooks Iii, C.L.3
-
111
-
-
0034308093
-
-
M. Feig, P. Rotkiewicz, A. Kolinski, J. Skolnick, and C. L. Brooks III, Proteins: Struct., Funct., Genet. 41, 86 (2000).
-
(2000)
Proteins: Struct., Funct., Genet.
, vol.41
, pp. 86
-
-
Feig, M.1
Rotkiewicz, P.2
Kolinski, A.3
Skolnick, J.4
Brooks Iii, C.L.5
-
112
-
-
0042511005
-
-
A. A. Canutescu, A. A. Shelenkov, and R. L. Dunbrack, Jr., Protein Sci. 12, 2001 (2003).
-
(2003)
Protein Sci.
, vol.12
, pp. 2001
-
-
Canutescu, A.A.1
Shelenkov, A.A.2
Dunbrack Jr., R.L.3
-
113
-
-
84986512474
-
-
B. R. Brooks, R. E. Bruccoleri, B. D. Olafson, D. J. States, S. Swaminathan, and M. Karplus, J. Comput. Chem. 4, 187 (1983).
-
(1983)
J. Comput. Chem.
, vol.4
, pp. 187
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
114
-
-
0026801084
-
-
H. Gouda, H. Torigoe, A. Saito, M. Sato, Y. Arata, and I. Shimada, Biochemistry 31, 9665 (1992).
-
(1992)
Biochemistry
, vol.31
, pp. 9665
-
-
Gouda, H.1
Torigoe, H.2
Saito, A.3
Sato, M.4
Arata, Y.5
Shimada, I.6
-
115
-
-
0028032397
-
-
N. D. Clarke, C. R. Kissinger, J. Desjarlais, G. L. Gilliland, and C. O. Pabo, Protein Sci. 3, 1779 (1994).
-
(1994)
Protein Sci.
, vol.3
, pp. 1779
-
-
Clarke, N.D.1
Kissinger, C.R.2
Desjarlais, J.3
Gilliland, G.L.4
Pabo, C.O.5
-
116
-
-
0036407694
-
-
M. Allen, A. Friedler, O. Schon, and M. Bycroft, J. Mol. Biol. 323, 411 (2002).
-
(2002)
J. Mol. Biol.
, vol.323
, pp. 411
-
-
Allen, M.1
Friedler, A.2
Schon, O.3
Bycroft, M.4
-
119
-
-
0037197857
-
-
D. Kihara, Y. Zhang, H. Lu, A. Kolinski, and J. Skolnick, Proc. Natl. Acad. Sci. U.S.A. 99, 5993 (2002).
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 5993
-
-
Kihara, D.1
Zhang, Y.2
Lu, H.3
Kolinski, A.4
Skolnick, J.5
-
120
-
-
0035703089
-
-
R. Bonneau, J. Tsai, I. Ruczinski, D. Chivian, C. Rohl, and D. Baker, Proteins: Struct., Funct., Genet. S5, 119 (2001).
-
(2001)
Proteins: Struct., Funct., Genet.
, vol.5
, pp. 119
-
-
Bonneau, R.1
Tsai, J.2
Ruczinski, I.3
Chivian, D.4
Rohl, C.5
Baker, D.6
-
121
-
-
0242299187
-
-
P. Aloy, A. Stark, C. Hadley, and R. B. Russell, Proteins: Struct., Funct., Genet. 53, 436 (2003).
-
(2003)
Proteins: Struct., Funct., Genet.
, vol.53
, pp. 436
-
-
Aloy, P.1
Stark, A.2
Hadley, C.3
Russell, R.B.4
-
122
-
-
29244450432
-
-
Ph.D. thesis, University of Cambridge
-
D. A. Evans, Ph.D. thesis, University of Cambridge, 2003.
-
(2003)
-
-
Evans, D.A.1
-
123
-
-
0004116989
-
-
2nd ed. (MIT, Cambridge, MA
-
T. H. Cormen, C. E. Leiserson, R. L. Rivest, and C. Stein, Introduction to Algorithms, 2nd ed. (MIT, Cambridge, MA, 2001).
-
(2001)
Introduction to Algorithms
-
-
Cormen, T.H.1
Leiserson, C.E.2
Rivest, R.L.3
Stein, C.4
-
126
-
-
8344277888
-
-
S. Ołdziej, A. Liwo, C. Czaplewski, J. Pillardy, and H. A. Scheraga, J. Phys. Chem. B 108, 16934 (2004).
-
(2004)
J. Phys. Chem. B
, vol.108
, pp. 16934
-
-
Ołdziej, S.1
Liwo, A.2
Czaplewski, C.3
Pillardy, J.4
Scheraga, H.A.5
-
127
-
-
8344262957
-
-
S. Ołdziej, J. Ła̧giewka, A. Liwo, C. Czaplewski, M. Chinchio, M. Nanias, and H. A. Scheraga, J. Phys. Chem. B 108, 16950 (2004).
-
(2004)
J. Phys. Chem. B
, vol.108
, pp. 16950
-
-
Ołdziej, S.1
Ła̧giewka, J.2
Liwo, A.3
Czaplewski, C.4
Chinchio, M.5
Nanias, M.6
Scheraga, H.A.7
-
129
-
-
19644381706
-
-
T. K. Chiu, J. Kubelka, R. Herbst-Irmer, W. A. Eaton, J. Hofrichter, and D. R. Davies, Proc. Natl. Acad. Sci. U.S.A. 102, 7517 (2005).
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 7517
-
-
Chiu, T.K.1
Kubelka, J.2
Herbst-Irmer, R.3
Eaton, W.A.4
Hofrichter, J.5
Davies, D.R.6
|