Development and evaluation of PCR-based diagnostic assays for the bacterial speck and bacterial spot pathogens of tomato

Plant Disease

Volumn 90, Issue 4, 2006, Pages 451-458

  Cuppels, Diane A ^a   Louws, Frank J ^b   Ainsworth, Teresa ^a  

^a AGRICULTURE AND AGRI FOOD CANADA   (Canada)

^b NORTH CAROLINA STATE UNIVERSITY   (United States)

Author keywords

Coronatine; Rep PCR; Xanthomonas gardneri

Indexed keywords

ASSAYS; DIAGNOSIS; DNA; FRUITS; GREENHOUSES;

CORONATINE; PATHOGENS; POLYMERASE CHAIN REACTION; REP-PCR; XANTHOMONAS GARDNERI;

BACTERIA;

BACTERIA; DIAGNOSIS; FRUITS; GREENHOUSES; NUCLEIC ACIDS;

BACTERIA (MICROORGANISMS); LYCOPERSICON ESCULENTUM; PSEUDOMONAS SYRINGAE; PSEUDOMONAS SYRINGAE PV. TOMATO; XANTHOMONAS; XANTHOMONAS GARDNERI;

EID: 33645300091     PISSN: 01912917     EISSN: None     Source Type: Journal    
DOI: 10.1094/PD-90-0451     Document Type: Article

References (46)

1. Altschul, S., Madden, T., Schaffer, A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D. 1997. Gapped BLAST and PSI_BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
2. Atlas, R., and Bej, A. K. 1994. Polymerase chain reaction. Pages 418-435 in: Methods in General and Molecular Bacteriology. P. Gerhardt, R. G. E. Murray, W. A. Wood, and N. R. Krieg, eds. American Society for Microbiology, Washington, DC.
3. Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D .D., Seidman, J.G., Smith, J. A., and Struhl, J. A., eds. 1987. Current Protocols in Molecular Biology, and Supplements. John Wiley & Sons, Inc., New York.
4. Bender, C. L., Young, S. A., and Mitchell, R. E. 1991. Conservation of plasmid DNA sequences in coronatine-producing pathovars of Pseudomonas syringae. Appl. Environ. Microbiol. 57:993-999.
5. Bereswill, S., Bugert, P., Völksch, B., Ullrich, M., Bender, C., and Geider, K. 1994. Identification and relatedness of coronatine-producing Pseudomonas syringae pathovars by PCR analysis and sequence determination of the amplification products. Appl. Environ. Microbiol. 60:2924-2930.
6. Bereswill, S., Pahl, A., Bellemann, P., Zeller, W., and Geider, K. 1992. Sensitive and species-specific detection of Erwinia amylovora by polymerase chain reaction analysis. Appl. Environ. Microbiol. 58:3522-3526.
7. Bouzar, H., Jones, J. B., Stall, R. E., Hodge, N., C., Minsavage, G. V., Benedict, A. A., and Alvarez, A. M. 1994. Physiological, chemical, serological, and pathogenic analyses of a worldwide collection of Xanthomonas campestris pv. vesicatoria strains. Phytopathology 84:663-671.
8. Bouzar, H., Jones, J. B., Stall, R. E., Louws, F. J., Schneider, M., Rademaker, J. L. W., de Bruijn, F. J., and Jackson, L. E. 1999. Multiphasic taxonomy of bacteria causing spot disease on tomato and pepper plants in the Caribbean and Central America reveals distinct predominance of Xanthomonas axonopodis vesicatoria strains. Phytopathology 89:328-335.
9. Brooks, D. M., Hernandez-Guzman, G., Kloek, A. P., Alarcon-Chaidez, F., Sreedharan, A., Rangaswamy, V., Penaloza-Vazquez, A., Bender, C. L., and Kunkel, B. 2004. Identification and characterization of a well-defined series of coronatine biosynthetic mutants of Pseudomonas syringae pv. tomato DC3000. Mol. Plant-Microbe Interact. 17:162-174.
10. Cuppels, D. 1986. Generation and characterization of Tn5 insertion mutations in Pseudomonas syringae pv. tomato. Appl. Environ. Microbiol. 51:323-327.
11. Cuppels, D. 2001. Bacterial speck of tomato. Pages 82-83 in: Encyclopedia of Plant Pathology, 2-Vol. Set. O. Maloy and T. D. Murray, eds. John Wiley & Sons, Inc., New York.
12. Cuppels, D. A., and Ainsworth, T. 1995. Comparison of the Pseudomonas syringae pv. tomato and Pseudomonas syringae pv. maculicola genetic loci required for the synthesis of the phytotoxin coronatine. Appl. Environ. Microbiol. 61:3530-3536.
13. Cuppels, D. A., and Elmhirst, J. 1999. Disease development and changes in the natural Pseudomonas syringae pv. tomato populations on field tomato plants. Plant Dis. 83:759-764.
14. Cuppels, D. A., Moore, R. A., and Morris, V. L. 1990. Construction and use of a nonradioactive DNA hybridization probe for detection of Pseudomonas syringae pv. tomato on tomato plants. Appl. Environ. Microbiol. 56:1743-1749.
15. DeBoer, S., Cuppels, D. A., and Gitaitis, R. D. 1996. Detecting latent bacterial infections. Pages 27-57 in: Advances in Botanical research. S. DeBoer, J. Andrews, and I. C. Tommerup, eds. Academic Press, London.
16. Fenselau, S., Balbo, I., and Bonas, U. 1995. Sequence and expression analysis of the hrpB pathogenicity operon of Xanthomonas campestris pv. vesicatoria which encodes eight proteins with similarity to components of the Hrp, Ysc, Spa, and Fli secretion systems. Mol. Plant-Microbe Interact. 8:845-854.
17. Goode, M. J., and Sasser, M. 1980. Prevention-the key to controlling bacterial spot and bacterial speck of tomato. Plant Dis. 64:831-834.
18. Hartung, J. S., Daniel, J. F., and Pruvost, O. P. 1993. Detection of Xanthomonas campestris pv. citri by the polymerase chain reaction method. Appl. Environ. Microbiol. 59:1143-1148.
19. Jones, J. B., Bouzar, H., Stall, R. E., Almira, E. C., Roberts, P. D., Bowen, B. W., Sudberry, J., Strickler, P. M., and Chun. J. 2000. Systematic analysis of xanthomonads (Xanthomonas spp.) associated with pepper and tomato lesions. Int. J. Syst. Evol. Microbiol. 50:1211-1219.
20. Jones, J. B., Lacy, G. H., Bouzar, H., Stall, R. E., and Schaad, N. W. 2004. Reclassification of the xanthomonads associated with bacterial spot disease of tomato and pepper. Syst. Appl. Microbiol. 27:755-762.
21. Jones, J. B., Stall, R. E., and Bouzar, H. 1998. Diversity among xanthomonads pathogenic on pepper and tomato. Annu. Rev. Phytopathol. 36:41-58.
22. Kuflu, K., and Cuppels, D. 1997. Development of a diagnostic DNA probe for xanthomonads causing bacterial spot of peppers and tomatoes. Appl. Environ. Microbiol. 63:4462-4470.
23. Louws, F., and Cuppels, D. 2001. Molecular techniques. Pages 321-327 in: Laboratory Guide for Identification of Plant Pathogenic Bacteria. Third ed. N. W. Schaad, J. B. Jones, and W. Chun, eds. American Phytopathological Society Press, St. Paul, MN.
24. Louws, F., Fulbright, D. W., Stephens, C., and De Bruijn, F. J. 1995. Determination of genomic structure by rep-PCR fingerprinting to rapidly classify Xanthomonas campestris pv. vesicatoria. Phytopathology 85:528-536.
25. Louws, F. J., Wilson, M., Campbell, H. L., Cuppels, D. A., Jones, J. B., Shoemaker, P. B., Sahin F., and Miller, S. A. 2001. Field control of bacterial spot and bacterial speck of tomato using a plant activator. Plant Dis. 85:481-488.
26. McLeod, S. M., and Johnson, R. C. 2001. Control of transcription by nucleoid proteins. Curr. Opin. Microbiol. 4:152-159.
27. Morris, V. L., Jackson, D. P., Grattan, M., Ainsworth, T., and Cuppels, D. A. 1995. Isolation and sequence analysis of the Pseudomonas syringae pv. tomato gene encoding a 2,3-diphosphoglycerate-independent phosphoglyceromutase. J. Bacteriol. 177:1727-1733.
28. Myers, M. L., Panicker, G., and Bej, A. K. 2003. PCR detection of a newly emerged pandemic Vibrio parahaemolyticus O3:K6 pathogen in pure cultures and seeded waters from the Gulf of Mexico. Appl. Environ. Microbiol. 69:2194-2200.
29. Nabizadeh-Ardekani, F., Koopmann, B., and Rudolph, K. 1997. The use of PCR to detect Pseudomonas syringae pv. tomato in planta. Pages 470-474 in: Pseudomonas syringae pathovars and related pathogens. K. Rudolph, T. Burr, J. Mansfield, D. Stead, A. Vivian, and J. von Kietzell, eds. Kluwer Academic Publishers, Dordrecht, The Netherlands.
30. Noël, L., Thieme, F., Nennstiel, D., and Bonas, U. 2002. Two novel type III-secreted proteins of Xanthomonas campestris pv. vesicatoria are encoded within the hrp pathogenicity island. J. Bacteriol. 184:1340-1348.
31. Obradovic, A., Mavridis, A., Rudolph, K., Janse, J. D., Arsenijevic, M., Jones, J. B., Minsavage, G. V., and Wang, J.-F. 2004. Characterization and PCR-based typing of Xanthomonas campestris pv. vesicatoria from pepper and tomatoes in Serbia. Eur. J. Plant Pathol. 110:285-292.
32. Quezado-Duval, A. 2004. Diversity of Xanthomonas sp. associated with bacterial spot of processing tomatoes in Brazil. (Abstr.) Page 52 in: 1st Int. Symp. Tomato Dis. 19th Annu. Tomato Dis. Workshop, Orlando, FL.
33. Rademaker, J. L. W., Louws, F. L., Schultz, M. H., Rossbach, U., Vauterin, L., Swings, J., and de Bruijn, F. J. 2005. A comprehensive species to strain taxonomic framework for Xanthomonas. Phytopathology 95:1098-1111.
34. Rangaswamy, V., Jiralerspong, S., Parry, R., and Bender, C. L. 1998. Biosynthesis of the Pseudomonas polyketide coronafacic acid required monofunctional and multifunctional polyketide synthease proteins. Proc. Natl. Acad. Sci. USA 95:15469-15474.
35. Reischl, U., Pulz, M., Ehret, W., and Wolf, H. 1994. PCR-based detection of mycobacteria in sputum samples using a simple and reliable DNA extraction protocol. BioTechnology 17:844-845.
36. Sambrook, J., and Russell, D. W. 2001. Molecular Cloning: A Laboratory Manual, 3rd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
37. Schaad, N. W., Vidaver, A. K., Lacy, G. H., Rudolph, K., and Jones, J. B. 2000. Evaluation of proposed amended names of several pseudomonads and xanthomonads and recommendations. Phytopathology 90:208-213.
38. Sciaky, D., Montoya, A. L., and Chilton, M. D. 1978. Fingerprints of Agrobacterium Ti plasmids. Plasmid 1:238-253.
39. Short, J. M., Fernandez, J. M., Sorge, J. A., and Huse, W. D. 1988. λZAP: A bacteriophage λ expression vector with in vivo excision properties. Nucleic Acids Res. 16:7583-7600.
40. Sijam, K., Chang, C. J., and Gitaitis, R. D. 1991. An agar medium for the isolation and identification of Xanthomonas campestris pv. vesicatoria from seed. Phytopathology 81:831-834.
41. Stall, R. E., Beaulieu, C., Egel, D., Hodge, N. C., Leite, R. P., Minsavage, G. V., Bouzar, H., Jones, J. B., Alvarez, A. M., and Benedict, A. A. 1994. Two genetically diverse groups of strains are included in Xanthomonas campestris pv. vesicatoria. Int. J. Syst. Bacteriol. 44:47-53.
42. Ullrich, M., Bereswill, S., Völksch, B., Fritsche, W., and Geider, K. 1993. Molecular characterization of field isolates of Pseudomonas syringae pv. glycinea differing in coronatine production. J. Gen. Microbiol. 139:1927-1937.
43. Van Doorn, J., Hollinger, T. C., and Oudega, B. 2001. Analysis of the type IV fimbrial-subunit gene fimA of Xanthomonas hyacinthi: application in PCR-mediated detection of yellow disease in hyacinths. Appl. Environ. Microbiol. 67:598-607.
44. Vauterin, L., Hoste, B., Kersters, K., and Swings, J. 1995. Reclassification of Xanthomonas. Int. J. Syst. Bacteriol. 45:472-489.
45. Wilson, I. 1997. Inhibition and facilitation of nucleic acid amplification. Appl. Environ. Microbiol. 63:3741-3751.
46. Young, J. M., Bull, C. T., De Boer, S. H., Firrao, G., Gardan, L., Saddler, G. E., Stead, D. E., and Takikawa, Y. 2001. Classification, nomenclature, and plant pathogenic bacteria - a clarification. Phytopathology 91:617-620.