Systematic analysis of xanthomonads (Xanthomonas spp.) associated with pepper and tomato lesions

International Journal of Systematic and Evolutionary Microbiology

Volumn 50, Issue 3, 2000, Pages 1211-1219

  Jones, J B ^a,b   Bouzar, H ^a,c   Stall, R E ^b   Almira, E C ^b   Roberts, P D ^a   Bowen, B W ^b   Sudberry, J ^a   Strickler, P M ^a   Chun, J ^a  

^a UNIVERSITY OF FLORIDA   (United States)

^b UNIVERSITY OF FLORIDA   (United States)

^c Sakata Seed Ibérica SLU   (United States)

Author keywords

APIZYM; Bacterial taxonomy; Fluorimetric DNA hybridization; Phylogenetic analysis; Pulsed field gel electrophoresis

Indexed keywords

ARTICLE; DNA HYBRIDIZATION; ENZYME ACTIVITY; EVOLUTION; FLUOROMETRY; GENOME; HUMIDITY; NUCLEOTIDE SEQUENCE; PEPPER; PHYLOGENY; PRIORITY JOURNAL; PULSED FIELD GEL ELECTROPHORESIS; RESTRICTION FRAGMENT; RNA SEQUENCE; TAXONOMY; TOMATO; XANTHOMONAS; XANTHOMONAS AXONOPODIS; XANTHOMONAS VESICATORIA;

ANIMALIA; BACTERIA (MICROORGANISMS); LYCOPERSICON ESCULENTUM; NEGIBACTERIA; XANTHOMONAS; XANTHOMONAS AXONOPODIS; XANTHOMONAS AXONOPODIS PV. VESICATORIA; XANTHOMONAS GARDNERI; XANTHOMONAS VESICATORIA;

EID: 0034034096     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/00207713-50-3-1211     Document Type: Article

References (44)

1. Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D. & Seidman, K. (1987). Current Protocols In Molecular Biology. New York: Wiley.
2. Bouzar, H., Jones, J. B., Stall, R. E., Hodge, N. C., Minsavage, G. V., Benedict, A. A. & Alvarez, A. M. (1994a). Physiological, chemical, serological, and pathogenic analyses of a worldwide collection of Xanthomonas campestris pv. vesicatoria strains. Phytopathology 84, 663-671.
3. Bouzar, H., Jones, J. B., Stall, R. E., Somodi, G. C., Kelly, R. O. & Daouzli, N. (1994b). Phenotypic characterization of Xanthomonas campestris pv. vesicatoria strains from the Caribbean and Central America. Phytopathology 84, 1069.
4. Bouzar, H., Jones, J. B., Minsavage, G. V., Stall, R. E. & Scott, J. W. (1994c). Proteins unique to phenotypically distinct groups of Xanthomonas campestris pv. vesicatoria revealed by silver staining. Phytopathology 84, 39-44.
5. Bouzar, H., Jones, J. B., Stall, R. E. & Sudberry, J. J. (1995). Homology groups of Xanthomonas campestris pv. vesicatoria (Xcv) based on DNA hybridization in microtiter plates. Phytopathology 85, 1148.
6. Bouzar, H., Jones, J. B., Somodi, G. C., Stall, R. E., Daouzli, N., Lambe, R. C., Felix-Gastelum, R. & Trinidad-Correa, R. (1996). Xanthomonas campestris pv. vesicatoria race variation in tomato and pepper fields of Mexico. Can J Plant Pathol 18, 75-77.
7. Bouzar, H., Jones, J. B., Stall, R. E., Louws, F., Schneider, F. J., Rademaker, M., de Bruijn, J. W. L. & Jackson, L. E. (1999). Multiphasic analysis of xanthomonads causing bacterial spot disease on tomato and pepper in the Caribbean and Central America: evidence for common lineages within and between countries. Phytopathology 89, 328-335.
8. De Ley, J. (1978). Modern molecular methods in bacterial taxonomy: evaluation, application, prospects. In Proceedings of the 4th International Conference on Plant Pathogenic Bacteria, Angers, pp. 347-357.
9. Doidge, E. M. (1921). A tomato canker. Ann Appl Biol 7, 407-430.
10. Dowson, W. J. (1939). On the systematic position and generic names of the gram negative bacterial plant pahtogens. Zentbl Bakteriol Parasitenk Infektionskr Hyg Abt II 100, 177-193.
11. Dye, D. W. (1966). Cultural and biochemical reaction of additional Xanthomonas species. N Z J Sci 9, 913-919.
12. Dye, D. W. (1978). Genus IX. Xanthomonas. Dowson (1939). In A Proposed Nomenclature and Classification for Plant Pathogenic Bacteria. Edited by J. M. Young, D. W. Dye, J. F. Bradbury, C. G. Panagopoulos & C. F. Robbs. N Z J Agric Res 21, 153-177.
13. Dye, D. W. (1978). Genus IX. Xanthomonas. Dowson (1939). In A Proposed Nomenclature and Classification for Plant Pathogenic Bacteria. Edited by J. M. Young, D. W. Dye, J. F. Bradbury, C. G. Panagopoulos & C. F. Robbs. N Z J Agric Res 21, 153-177.
14. Dye, D. W., Starr, M. P. & Stolp, H. (1964). Taxonomic clarification of Xanthomonas vesicatoria based upon host specificity, bacteriophage sensitivity, and cultural characteristics. Phytopathol Z 51, 394-407.
15. Egel, D. S., Graham, J. & Stall, R. E. (1991). Genomic relatedness of Xanthomonas campestris strains causing diseases of citrus. Appl Environ Microbiol 57, 2724-2730.
16. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
17. Felsenstein, J., (1993). PHYLIP (Phylogeny Inference Package) version 3.57. Computer program and manual distributed by the author.
18. Felsenstein, J. (1995). PHYLIP. (Phylogeny Inference Package) version 3.5. Department of Genetics, University of Washington, Seattle, WA, USA.
19. Fitch, W. C. & Margoliash, E. (1967). Construction of phylogenetic trees. Science 155, 279-284.
20. Fox, G. E., Wisotzkey, J. D. & Jurtshuk, P., Jr (1992). How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int J Syst Bacteriol 42, 166-170.
21. Gardner, M. W. & Kendrick, J. B. (1921). Bacterial spot of tomato. J Agr Res 21, 123-156.
22. Gardner, M. W. & Kendrick, J. B. (1923). Bacterial spot of tomato and pepper. Phytopathology 13, 307-315.
23. Hauben, L., Vauterin, L., Swings, J. & Moore, R. E. B. (1997). Comparison of 16S ribosomal DNA sequences of all Xanthomonas species. Int J Syst Bacteriol 47, 328-335.
24. Hildebrand, D. C., Palleroni, N. J. & Schroth, M. N. (1990). Deoxyribonucleic acid relatedness of 24 xanthomonad strains representing 23 Xanthomonas campestris pathovars and Xanthomonas fragariae. J Appl Bacteriol 68, 263-269.
25. Innes, M. A., Gelfand, D. H. & Sninsky, J. J. (1995). PCR Strategies. New York: Academic Press.
26. Johnson, J. L. (1994). Similarity analysis of DNAs. In Methods for General and Molecular Bacteriology, pp. 655-682. Edited by P. Gerhardt, R. G. E. Murray & N. R. Krieg. Washington, DC: American Society for Microbiology.
27. Jones, J. B., Stall, R. E., Somodi, G. C., Bouzar, H. & Hodge, N. C. (1995). A third tomato race of Xanthomonas campestris pv. vesicatoria. Plant Dis 79, 395-398.
28. Kimura, M. (1980). A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
29. Kumar, S., Tamura, K. & Nei, M. (1994). MEGA: molecular evolutionary genetic analysis software for microcomputers. CABIOS 10, 189-191.
30. Leblond-Bourget, N., Philippe, H., Mangin, I. & Decaris, B. (1996). 16S rRNA and 16S to 23S internal transcribed apacer sequence analyses reveal inter- and intraspecific Bifidobacterium phylogeny. Int J Syst Bacteriol 46, 102-111.
31. Leite, R. P., Egel, D. S. & Stall, R. E. (1994). Genetic analysis of hrp-related DNA sequences of Xanthomonas campestris strains causing diseases of citrus. Appl Environ Microbiol 60, 1078-1086.
32. Nei, M. (1987). Molecular Evolutionary Genetics. New York: Columbia University Press.
33. Nei, M. & Li, W.-H. (1979). Mathematical model for studying genetic variation in terms of restriction enconucleases. Proc Natl Acad Sci USA 76, 5269-5273.
34. Olsen, G. J., Woese, C. R. & Overbeek, R. (1994). The winds of evolutionary change: breathing new life into microbiology. J Bacteriol 176, 1-6.
35. Palleroni, N. J., Hildebrand, D. C., Schroth, M. N. & Hendson, M. (1993). Deoxyribonucleic acid relatedness of 21 strains of Xanthomonas species and pathovars. J Appl Bacteriol 75, 441-446.
36. Ponsonnet, C. & Nesme, X. (1994). Identification of Agrobacterium strains by PCR-RFLP analysis of pTi and chromosomal regions. Arch Microbiol 161, 300-309.
37. Saitou, N. & Nei, M. (1987). The neighbor-joining method: new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
38. Stall, R. E., Beaulieu, C., Egel, D. S., Hodge, N. C., Leite, R. P., Minsavage, G. V., Bouzar, H., Jones, J. B., Alvarez, A. M. & Benedict, A. A. (1994). Two genetically diverse groups of strains are included in Xanthomonas campestris pv. vesicatoria. Int J Syst Bacteriol 44, 47-53.
39. Šutic, D. (1957). Bakterioze crvenog patlidzana (Tomato bacteriosis). In Posebna Izd Inst Zasht Bilja Beograd, vol. 6, pp. 1-65 (special edition). Beograd: Institute of Plant Protein. (English summary: Rev Appl Mycol 36, 734-735.)
40. Šutic, D. (1957). Bakterioze crvenog patlidzana (Tomato bacteriosis). In Posebna Izd Inst Zasht Bilja Beograd, vol. 6, pp. 1-65 (special edition). Beograd: Institute of Plant Protein. (English summary: Rev Appl Mycol 36, 734-735.)
41. Swofford, D. L. (1993). PAUP: phylogeny analysis using parsimony, version 3.1.1. Champaign, IL: Natural History Survey.
42. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL w: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matirx choice. Nucleic Acids Res 22, 4673-4680.
43. Vauterin, L., Swings, J., Vauterin, L. & 13 other authors (1990). Towards an improved taxonomy of Xanthomonas. Int J Syst Bacteriol 40, 312-316.
44. Vauterin, L., Hoste, B., Kersters, K. & Swings, J. (1995). Reclassification of Xanthomonas. Int J Syst Bacteriol 45, 472-489.