-
1
-
-
0003470656
-
-
Cold Spring Harbor Laboratory Press, Plainview, NY
-
DasSarma S, Fleischmann EM: Halophiles. 1995, Plainview, NY: Cold Spring Harbor Laboratory Press
-
(1995)
Halophiles
-
-
DasSarma, S.1
Fleischmann, E.M.2
-
2
-
-
0037864281
-
Repair of UV damage in Halobacterium salinarum
-
PID: 12773185, COI: 1:CAS:528:DC%2BD3sXktF2hs7s%3D
-
McCready S, Marcello L: Repair of UV damage in Halobacterium salinarum. Biochem Soc Trans. 2003, 31: 694-698. 10.1042/BST0310694. DOI: 10.1042/bst0310694
-
(2003)
Biochem Soc Trans
, vol.31
, pp. 694-698
-
-
McCready, S.1
Marcello, L.2
-
3
-
-
3042615963
-
Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1
-
PID: 15140832, COI: 1:CAS:528:DC%2BD2cXkvFGhtr4%3D
-
Baliga NS, Bjork SJ, Bonneau R, Pan M, Iloanusi C, Kottemann MC, Hood L, DiRuggiero J: Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1. Genome Res. 2004, 14: 1025-1035. 10.1101/gr.1993504. DOI: 10.1101/gr.1993504
-
(2004)
Genome Res
, vol.14
, pp. 1025-1035
-
-
Baliga, N.S.1
Bjork, S.J.2
Bonneau, R.3
Pan, M.4
Iloanusi, C.5
Kottemann, M.C.6
Hood, L.7
DiRuggiero, J.8
-
4
-
-
0029790856
-
Pitfalls of protein sequence analysis
-
PID: 8768907, COI: 1:CAS:528:DyaK28XkvVKrt7g%3D
-
Rost B, Valencia A: Pitfalls of protein sequence analysis. Curr Opin Biotechnol. 1996, 7: 457-461. 10.1016/S0958-1669(96)80124-8. DOI: 10.1016/S0958-1669(96)80124-8
-
(1996)
Curr Opin Biotechnol
, vol.7
, pp. 457-461
-
-
Rost, B.1
Valencia, A.2
-
5
-
-
0034308142
-
Practical limits of function prediction
-
PID: 10944397, COI: 1:CAS:528:DC%2BD3cXmslyhu7o%3D
-
Devos D, Valencia A: Practical limits of function prediction. Proteins. 2000, 41: 98-107. 10.1002/1097-0134(20001001)41:1<98::AID-PROT120>3.3.CO;2-J. DOI: 10.1002/1097-0134(20001001)41:1<98::AID-PROT120>3.0.CO;2-S
-
(2000)
Proteins
, vol.41
, pp. 98-107
-
-
Devos, D.1
Valencia, A.2
-
6
-
-
0035424599
-
Intrinsic errors in genome annotation
-
PID: 11485799, COI: 1:CAS:528:DC%2BD3MXlsFyltbs%3D
-
Devos D, Valencia A: Intrinsic errors in genome annotation. Trends Genet. 2001, 17: 429-431. 10.1016/S0168-9525(01)02348-4. DOI: 10.1016/S0168-9525(01)02348-4
-
(2001)
Trends Genet
, vol.17
, pp. 429-431
-
-
Devos, D.1
Valencia, A.2
-
7
-
-
12944270421
-
Genome sequence of Halobacterium species NRC-1
-
PID: 11016950, COI: 1:CAS:528:DC%2BD3cXnvVSgtbk%3D
-
Ng WV, Kennedy SP, Mahairas GG, Berquist B, Pan M, Shukla HD, Lasky SR, Baliga NS, Thorsson V, Sbrogna J, et al: Genome sequence of Halobacterium species NRC-1. Proc Natl Acad Sci USA. 2000, 97: 12176-12181. 10.1073/pnas.190337797. DOI: 10.1073/pnas.190337797
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 12176-12181
-
-
Ng, W.V.1
Kennedy, S.P.2
Mahairas, G.G.3
Berquist, B.4
Pan, M.5
Shukla, H.D.6
Lasky, S.R.7
Baliga, N.S.8
Thorsson, V.9
Sbrogna, J.10
-
8
-
-
0032483312
-
Method for prediction of protein function from sequence using the sequence-to-structure-to-function paradigm with application to glutaredoxins/thioredoxins and T1 ribonucleases
-
PID: 9719646, COI: 1:CAS:528:DyaK1cXmtVygs70%3D
-
Fetrow JS, Skolnick J: Method for prediction of protein function from sequence using the sequence-to-structure-to-function paradigm with application to glutaredoxins/thioredoxins and T1 ribonucleases. J Mol Biol. 1998, 281: 949-968. 10.1006/jmbi.1998.1993. DOI: 10.1006/jmbi.1998.1993
-
(1998)
J Mol Biol
, vol.281
, pp. 949-968
-
-
Fetrow, J.S.1
Skolnick, J.2
-
9
-
-
0033150686
-
From protein structure to function
-
PID: 10361094, COI: 1:CAS:528:DyaK1MXks1Wqs78%3D
-
Orengo CA, Todd AE, Thornton JM: From protein structure to function. Curr Opin Struct Biol. 1999, 9: 374-382. 10.1016/S0959-440X(99)80051-7. DOI: 10.1016/S0959-440X(99)80051-7
-
(1999)
Curr Opin Struct Biol
, vol.9
, pp. 374-382
-
-
Orengo, C.A.1
Todd, A.E.2
Thornton, J.M.3
-
10
-
-
0035815113
-
Evolution of function in protein superfamilies, from a structural perspective
-
PID: 11286560, COI: 1:CAS:528:DC%2BD3MXitlOju7Y%3D
-
Todd AE, Orengo CA, Thornton JM: Evolution of function in protein superfamilies, from a structural perspective. J Mol Biol. 2001, 307: 1113-1143. 10.1006/jmbi.2001.4513. DOI: 10.1006/jmbi.2001.4513
-
(2001)
J Mol Biol
, vol.307
, pp. 1113-1143
-
-
Todd, A.E.1
Orengo, C.A.2
Thornton, J.M.3
-
11
-
-
0033977962
-
SCOP: a structural classification of proteins database
-
PID: 10592240, COI: 1:CAS:528:DC%2BD3cXhvVKjt7k%3D
-
Lo Conte L, Ailey B, Hubbard TJ, Brenner SE, Murzin AG, Chothia C: SCOP: a structural classification of proteins database. Nucleic Acids Res. 2000, 28: 257-259. 10.1093/nar/28.1.257. DOI: 10.1093/nar/28.1.257
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 257-259
-
-
Lo Conte, L.1
Ailey, B.2
Hubbard, T.J.3
Brenner, S.E.4
Murzin, A.G.5
Chothia, C.6
-
12
-
-
0030765455
-
Dali/FSSP classification of three-dimensional protein folds
-
PID: 9016542, COI: 1:CAS:528:DyaK2sXpvFKitw%3D%3D
-
Holm L, Sander C: Dali/FSSP classification of three-dimensional protein folds. Nucleic Acids Res. 1997, 25: 231-234. 10.1093/nar/25.1.231. DOI: 10.1093/nar/25.1.231
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 231-234
-
-
Holm, L.1
Sander, C.2
-
13
-
-
0032527783
-
Protein folds and functions
-
PID: 9687369, COI: 1:CAS:528:DyaK1cXltVSjtLw%3D
-
Martin AC, Orengo CA, Hutchinson EG, Jones S, Karmirantzou M, Laskowski RA, Mitchell JB, Taroni C, Thornton JM: Protein folds and functions. Structure. 1998, 6: 875-884. 10.1016/S0969-2126(98)00089-6. DOI: 10.1016/S0969-2126(98)00089-6
-
(1998)
Structure
, vol.6
, pp. 875-884
-
-
Martin, A.C.1
Orengo, C.A.2
Hutchinson, E.G.3
Jones, S.4
Karmirantzou, M.5
Laskowski, R.A.6
Mitchell, J.B.7
Taroni, C.8
Thornton, J.M.9
-
14
-
-
0036839162
-
MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison
-
PID: 12381844, COI: 1:CAS:528:DC%2BD38XotFeltb0%3D
-
Ortiz AR, Strauss CE, Olmea O: MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison. Protein Sci. 2002, 11: 2606-2621. 10.1110/ps.0215902. DOI: 10.1110/ps.0215902
-
(2002)
Protein Sci
, vol.11
, pp. 2606-2621
-
-
Ortiz, A.R.1
Strauss, C.E.2
Olmea, O.3
-
15
-
-
0027440362
-
Protein structure comparison by alignment of distance matrices
-
PID: 8377180, COI: 1:CAS:528:DyaK3sXms1Gru7o%3D
-
Holm L, Sander C: Protein structure comparison by alignment of distance matrices. J Mol Biol. 1993, 233: 123-138. 10.1006/jmbi.1993.1489. DOI: 10.1006/jmbi.1993.1489
-
(1993)
J Mol Biol
, vol.233
, pp. 123-138
-
-
Holm, L.1
Sander, C.2
-
16
-
-
0037265212
-
The CATH domain structure database
-
PID: 12647390, COI: 1:CAS:528:DC%2BD2cXitlelt7o%3D
-
Orengo CA, Pearl FM, Thornton JM: The CATH domain structure database. Methods Biochem Anal. 2003, 44: 249-271.
-
(2003)
Methods Biochem Anal
, vol.44
, pp. 249-271
-
-
Orengo, C.A.1
Pearl, F.M.2
Thornton, J.M.3
-
17
-
-
0028961335
-
SCOP: a structural classification of proteins database for the investigation of sequences and structures
-
PID: 7723011, COI: 1:CAS:528:DyaK2MXltVGgsr4%3D
-
Murzin AG, Brenner SE, Hubbard T, Chothia C: SCOP: a structural classification of proteins database for the investigation of sequences and structures. J Mol Biol. 1995, 247: 536-540. 10.1006/jmbi.1995.0159.
-
(1995)
J Mol Biol
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
18
-
-
0036600834
-
Evolution of protein structures and functions
-
PID: 12127461, COI: 1:CAS:528:DC%2BD38Xlt1Shs7w%3D
-
Kinch LN, Grishin NV: Evolution of protein structures and functions. Curr Opin Struct Biol. 2002, 12: 400-408. 10.1016/S0959-440X(02)00338-X. DOI: 10.1016/S0959-440X(02)00338-X
-
(2002)
Curr Opin Struct Biol
, vol.12
, pp. 400-408
-
-
Kinch, L.N.1
Grishin, N.V.2
-
19
-
-
0035783063
-
Fold change in evolution of protein structures
-
PID: 11551177, COI: 1:CAS:528:DC%2BD3MXms1altrs%3D
-
Grishin NV: Fold change in evolution of protein structures. J Struct Biol. 2001, 134: 167-185. 10.1006/jsbi.2001.4335. DOI: 10.1006/jsbi.2001.4335
-
(2001)
J Struct Biol
, vol.134
, pp. 167-185
-
-
Grishin, N.V.1
-
20
-
-
0030627901
-
Protein structures sustain evolutionary drift
-
PID: 9218962, COI: 1:CAS:528:DyaK2sXktlCgtb4%3D
-
Rost B: Protein structures sustain evolutionary drift. Fold Des. 1997, 2: S19-S24. DOI: 10.1016/S1359-0278(97)00059-X
-
(1997)
Fold Des
, vol.2
, pp. S19-S24
-
-
Rost, B.1
-
21
-
-
0032929780
-
Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins
-
PID: 10336385, COI: 1:CAS:528:DyaK1MXjtFCktA%3D%3D
-
Simons KT, Ruczinski I, Kooperberg C, Fox BA, Bystroff C, Baker D: Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins. Proteins. 1999, 34: 82-95. 10.1002/(SICI)1097-0134(19990101)34:1<82::AID-PROT7>3.3.CO;2-1. DOI: 10.1002/(SICI)1097-0134(19990101)34:1<82::AID-PROT7>3.0.CO;2-A
-
(1999)
Proteins
, vol.34
, pp. 82-95
-
-
Simons, K.T.1
Ruczinski, I.2
Kooperberg, C.3
Fox, B.A.4
Bystroff, C.5
Baker, D.6
-
22
-
-
0034985005
-
Ab initioprotein structure prediction: progress and prospects
-
PID: 11340057, COI: 1:CAS:528:DC%2BD3MXkvVaqsbg%3D
-
Bonneau R, Baker D: Ab initio protein structure prediction: progress and prospects. Annu Rev Biophys Biomol Struct. 2001, 30: 173-189. 10.1146/annurev.biophys.30.1.173. DOI: 10.1146/annurev.biophys.30.1.173
-
(2001)
Annu Rev Biophys Biomol Struct
, vol.30
, pp. 173-189
-
-
Bonneau, R.1
Baker, D.2
-
23
-
-
0035703089
-
Rosetta in CASP4: Progress in ab initio protein structure prediction
-
10.1002/prot.1170. Suppl 5
-
Bonneau R, Tsai J, Ruczinski I, Chivian D, Rohl C, Strauss CE, Baker D: Rosetta in CASP4: progress in ab initio protein structure prediction. Proteins. 2001, 119-126. 10.1002/prot.1170. Suppl 5
-
(2001)
Proteins.
, pp. 119-126
-
-
Bonneau, R.1
Tsai, J.2
Ruczinski, I.3
Chivian, D.4
Rohl, C.5
Strauss, C.E.6
Baker, D.7
-
24
-
-
0242299187
-
Predictions without templates: new folds, secondary structure, and contacts in CASP5
-
PID: 14579333, COI: 1:CAS:528:DC%2BD3sXptVygtL0%3D
-
Aloy P, Stark A, Hadley C, Russell RB: Predictions without templates: new folds, secondary structure, and contacts in CASP5. Proteins. 2003, 53 (Suppl 6): 436-456. 10.1002/prot.10546. DOI: 10.1002/prot.10546
-
(2003)
Proteins
, vol.53
, pp. 436-456
-
-
Aloy, P.1
Stark, A.2
Hadley, C.3
Russell, R.B.4
-
25
-
-
0242299155
-
CAFASP3: the third critical assessment of fully automated structure prediction methods
-
PID: 14579340, COI: 1:CAS:528:DC%2BD3sXptVygtb4%3D
-
Fischer D, Rychlewski L, Dunbrack RL, Ortiz AR, Elofsson A: CAFASP3: the third critical assessment of fully automated structure prediction methods. Proteins. 2003, 53 (Suppl 6): 503-516. 10.1002/prot.10538. DOI: 10.1002/prot.10538
-
(2003)
Proteins
, vol.53
, pp. 503-516
-
-
Fischer, D.1
Rychlewski, L.2
Dunbrack, R.L.3
Ortiz, A.R.4
Elofsson, A.5
-
26
-
-
10744226366
-
Rosetta predictions in CASP5: successes, failures, and prospects for complete automation
-
PID: 14579334, COI: 1:CAS:528:DC%2BD3sXptVygtLo%3D
-
Bradley P, Chivian D, Meiler J, Misura KM, Rohl CA, Schief WR, Wedemeyer WJ, Schueler-Furman O, Murphy P, Schonbrun J, et al: Rosetta predictions in CASP5: successes, failures, and prospects for complete automation. Proteins. 2003, 53 (Suppl 6): 457-468. 10.1002/prot.10552. DOI: 10.1002/prot.10552
-
(2003)
Proteins
, vol.53
, pp. 457-468
-
-
Bradley, P.1
Chivian, D.2
Meiler, J.3
Misura, K.M.4
Rohl, C.A.5
Schief, W.R.6
Wedemeyer, W.J.7
Schueler-Furman, O.8
Murphy, P.9
Schonbrun, J.10
-
27
-
-
0242362168
-
CASP5 assessment of fold recognition target predictions
-
PID: 14579328, COI: 1:CAS:528:DC%2BD3sXptVygt7Y%3D
-
Kinch LN, Wrabl JO, Krishna SS, Majumdar I, Sadreyev RI, Qi Y, Pei J, Cheng H, Grishin NV: CASP5 assessment of fold recognition target predictions. Proteins. 2003, 53 (Suppl 6): 395-409. 10.1002/prot.10557. DOI: 10.1002/prot.10557
-
(2003)
Proteins
, vol.53
, pp. 395-409
-
-
Kinch, L.N.1
Wrabl, J.O.2
Krishna, S.S.3
Majumdar, I.4
Sadreyev, R.I.5
Qi, Y.6
Pei, J.7
Cheng, H.8
Grishin, N.V.9
-
28
-
-
0035782683
-
Functional inferences from blind ab initioprotein structure predictions
-
PID: 11551178, COI: 1:CAS:528:DC%2BD3MXms1altro%3D
-
Bonneau R, Tsai J, Ruczinski I, Baker D: Functional inferences from blind ab initio protein structure predictions. J Struct Biol. 2001, 134: 186-190. 10.1006/jsbi.2000.4370. DOI: 10.1006/jsbi.2000.4370
-
(2001)
J Struct Biol
, vol.134
, pp. 186-190
-
-
Bonneau, R.1
Tsai, J.2
Ruczinski, I.3
Baker, D.4
-
29
-
-
0036968925
-
De novoprediction of three-dimensional structures for major protein families
-
PID: 12215415, COI: 1:CAS:528:DC%2BD38Xms1WktL4%3D
-
Bonneau R, Strauss CE, Rohl CA, Chivian D, Bradley P, Malmstrom L, Robertson T, Baker D: De novo prediction of three-dimensional structures for major protein families. J Mol Biol. 2002, 322: 65-78. 10.1016/S0022-2836(02)00698-8. DOI: 10.1016/S0022-2836(02)00698-8
-
(2002)
J Mol Biol
, vol.322
, pp. 65-78
-
-
Bonneau, R.1
Strauss, C.E.2
Rohl, C.A.3
Chivian, D.4
Bradley, P.5
Malmstrom, L.6
Robertson, T.7
Baker, D.8
-
30
-
-
0032952229
-
Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins
-
PID: 9847196, COI: 1:CAS:528:DyaK1MXpsVKhtA%3D%3D
-
Bateman A, Birney E, Durbin R, Eddy SR, Finn RD, Sonnhammer EL: Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins. Nucleic Acids Res. 1999, 27: 260-262. 10.1093/nar/27.1.260. DOI: 10.1093/nar/27.1.260
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 260-262
-
-
Bateman, A.1
Birney, E.2
Durbin, R.3
Eddy, S.R.4
Finn, R.D.5
Sonnhammer, E.L.6
-
31
-
-
9144257886
-
The Pfam protein families database
-
Bateman A, Coin L, Durbin R, Finn RD, Hollich V, Griffiths-Jones S, Khanna A, Marshall M, Moxon S, Sonnhammer EL, et al: The Pfam protein families database. Nucleic Acids Res. 2004, 32 Database issue: D138-D141. 10.1093/nar/gkh121. DOI: 10.1093/nar/gkh121
-
(2004)
Nucleic Acids Res
, vol.32 Database issue
, pp. D138-D141
-
-
Bateman, A.1
Coin, L.2
Durbin, R.3
Finn, R.D.4
Hollich, V.5
Griffiths-Jones, S.6
Khanna, A.7
Marshall, M.8
Moxon, S.9
Sonnhammer, E.L.10
-
32
-
-
0037069421
-
Coordinate regulation of energy transduction modules in Halobacteriumsp. analyzed by a global systems approach
-
PID: 12403819, COI: 1:CAS:528:DC%2BD38Xpt1yrtLo%3D
-
Baliga NS, Pan M, Goo YA, Yi EC, Goodlett DR, Dimitrov K, Shannon P, Aebersold R, Ng WV, Hood L: Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach. Proc Natl Acad Sci USA. 2002, 99: 14913-14918. 10.1073/pnas.192558999. DOI: 10.1073/pnas.192558999
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 14913-14918
-
-
Baliga, N.S.1
Pan, M.2
Goo, Y.A.3
Yi, E.C.4
Goodlett, D.R.5
Dimitrov, K.6
Shannon, P.7
Aebersold, R.8
Ng, W.V.9
Hood, L.10
-
33
-
-
2442679707
-
Proteomic analysis of an extreme halophilic archaeon, Halobacterium sp. NRC-1
-
PID: 12872007, COI: 1:CAS:528:DC%2BD3sXnsVSqtrY%3D
-
Goo YA, Yi EC, Baliga NS, Tao WA, Pan M, Aebersold R, Goodlett DR, Hood L, Ng WV: Proteomic analysis of an extreme halophilic archaeon, Halobacterium sp. NRC-1. Mol Cell Proteomics. 2003, 2: 506-524.
-
(2003)
Mol Cell Proteomics
, vol.2
, pp. 506-524
-
-
Goo, Y.A.1
Yi, E.C.2
Baliga, N.S.3
Tao, W.A.4
Pan, M.5
Aebersold, R.6
Goodlett, D.R.7
Hood, L.8
Ng, W.V.9
-
34
-
-
0034767491
-
Understanding the adaptation of Halobacterium species NRC-1 to its extreme environment through computational analysis of its genome sequence
-
PID: 11591641, COI: 1:CAS:528:DC%2BD3MXnvFCmtrs%3D
-
Kennedy SP, Ng WV, Salzberg SL, Hood L, DasSarma S: Understanding the adaptation of Halobacterium species NRC-1 to its extreme environment through computational analysis of its genome sequence. Genome Res. 2001, 11: 1641-1650. 10.1101/gr.190201. DOI: 10.1101/gr.190201
-
(2001)
Genome Res
, vol.11
, pp. 1641-1650
-
-
Kennedy, S.P.1
Ng, W.V.2
Salzberg, S.L.3
Hood, L.4
DasSarma, S.5
-
35
-
-
0037162464
-
Genomic evidence that the intracellular proteins of archaeal microbes contain disulfide bonds
-
PID: 12107280, COI: 1:CAS:528:DC%2BD38XlslKhu7o%3D
-
Mallick P, Boutz DR, Eisenberg D, Yeates TO: Genomic evidence that the intracellular proteins of archaeal microbes contain disulfide bonds. Proc Natl Acad Sci USA. 2002, 99: 9679-9684. 10.1073/pnas.142310499. DOI: 10.1073/pnas.142310499
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 9679-9684
-
-
Mallick, P.1
Boutz, D.R.2
Eisenberg, D.3
Yeates, T.O.4
-
36
-
-
0033538553
-
Transproteomic evidence of a loop-deletion mechanism for enhancing protein thermostability
-
PID: 10390356, COI: 1:CAS:528:DyaK1MXktFehsb8%3D
-
Thompson MJ, Eisenberg D: Transproteomic evidence of a loop-deletion mechanism for enhancing protein thermostability. J Mol Biol. 1999, 290: 595-604. 10.1006/jmbi.1999.2889. DOI: 10.1006/jmbi.1999.2889
-
(1999)
J Mol Biol
, vol.290
, pp. 595-604
-
-
Thompson, M.J.1
Eisenberg, D.2
-
37
-
-
10744230917
-
Automated prediction of CASP-5 structures using the Robetta server
-
PID: 14579342, COI: 1:CAS:528:DC%2BD3sXptVygtbw%3D
-
Chivian D, Kim DE, Malmstrom L, Bradley P, Robertson T, Murphy P, Strauss CE, Bonneau R, Rohl CA, Baker D: Automated prediction of CASP-5 structures using the Robetta server. Proteins. 2003, 53 (Suppl 6): 524-533. 10.1002/prot.10529. DOI: 10.1002/prot.10529
-
(2003)
Proteins
, vol.53
, pp. 524-533
-
-
Chivian, D.1
Kim, D.E.2
Malmstrom, L.3
Bradley, P.4
Robertson, T.5
Murphy, P.6
Strauss, C.E.7
Bonneau, R.8
Rohl, C.A.9
Baker, D.10
-
38
-
-
85182845299
-
-
Halo Research at ISB. [http://halo.systemsbiology.net/]
-
-
-
-
39
-
-
85182863557
-
-
NCBI COGs. [http://www.ncbi.nlm.nih.gov/COG/]
-
-
-
-
40
-
-
0035162592
-
The COG database: new developments in phylogenetic classification of proteins from complete genomes
-
PID: 11125040, COI: 1:CAS:528:DC%2BD3MXjtlWnsLo%3D
-
Tatusov RL, Natale DA, Garkavtsev IV, Tatusova TA, Shankavaram UT, Rao BS, Kiryutin B, Galperin MY, Fedorova ND, Koonin EV: The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res. 2001, 29: 22-28. 10.1093/nar/29.1.22. DOI: 10.1093/nar/29.1.22
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 22-28
-
-
Tatusov, R.L.1
Natale, D.A.2
Garkavtsev, I.V.3
Tatusova, T.A.4
Shankavaram, U.T.5
Rao, B.S.6
Kiryutin, B.7
Galperin, M.Y.8
Fedorova, N.D.9
Koonin, E.V.10
-
41
-
-
0035843145
-
The protein-protein interaction map of Helicobacter pylori
-
PID: 11196647, COI: 1:CAS:528:DC%2BD3MXlvFSrtA%3D%3D
-
Rain JC, Selig L, De Reuse H, Battaglia V, Reverdy C, Simon S, Lenzen G, Petel F, Wojcik J, Schachter V, et al: The protein-protein interaction map of Helicobacter pylori. Nature. 2001, 409: 211-215. 10.1038/35051615. DOI: 10.1038/35051615
-
(2001)
Nature
, vol.409
, pp. 211-215
-
-
Rain, J.C.1
Selig, L.2
De Reuse, H.3
Battaglia, V.4
Reverdy, C.5
Simon, S.6
Lenzen, G.7
Petel, F.8
Wojcik, J.9
Schachter, V.10
-
42
-
-
0035836765
-
A comprehensive two-hybrid analysis to explore the yeast protein interactome
-
PID: 11283351, COI: 1:CAS:528:DC%2BD3MXjtVagtLc%3D
-
Ito T, Chiba T, Ozawa R, Yoshida M, Hattori M, Sakaki Y: A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc Natl Acad Sci USA. 2001, 98: 4569-4574. 10.1073/pnas.061034498. DOI: 10.1073/pnas.061034498
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 4569-4574
-
-
Ito, T.1
Chiba, T.2
Ozawa, R.3
Yoshida, M.4
Hattori, M.5
Sakaki, Y.6
-
43
-
-
0034628508
-
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
-
PID: 10688190, COI: 1:CAS:528:DC%2BD3cXht1Oqsr0%3D
-
Uetz P, Giot L, Cagney G, Mansfield TA, Judson RS, Knight JR, Lockshon D, Narayan V, Srinivasan M, Pochart P, et al: A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature. 2000, 403: 623-627. 10.1038/35001009. DOI: 10.1038/35001009
-
(2000)
Nature
, vol.403
, pp. 623-627
-
-
Uetz, P.1
Giot, L.2
Cagney, G.3
Mansfield, T.A.4
Judson, R.S.5
Knight, J.R.6
Lockshon, D.7
Narayan, V.8
Srinivasan, M.9
Pochart, P.10
-
44
-
-
0033618555
-
Detecting protein function and protein-protein interactions from genome sequences
-
PID: 10427000, COI: 1:CAS:528:DyaK1MXltVehtbg%3D
-
Marcotte EM, Pellegrini M, Ng HL, Rice DW, Yeates TO, Eisenberg D: Detecting protein function and protein-protein interactions from genome sequences. Science. 1999, 285: 751-753. 10.1126/science.285.5428.751. DOI: 10.1126/science.285.5428.751
-
(1999)
Science
, vol.285
, pp. 751-753
-
-
Marcotte, E.M.1
Pellegrini, M.2
Ng, H.L.3
Rice, D.W.4
Yeates, T.O.5
Eisenberg, D.6
-
45
-
-
0034660322
-
Protein function in the post-genomic era
-
PID: 10866208, COI: 1:CAS:528:DC%2BD3cXksVyksLw%3D
-
Eisenberg D, Marcotte EM, Xenarios I, Yeates TO: Protein function in the post-genomic era. Nature. 2000, 405: 823-826. 10.1038/35015694. DOI: 10.1038/35015694
-
(2000)
Nature
, vol.405
, pp. 823-826
-
-
Eisenberg, D.1
Marcotte, E.M.2
Xenarios, I.3
Yeates, T.O.4
-
46
-
-
0033523989
-
Protein interaction maps for complete genomes based on gene fusion events
-
PID: 10573422, COI: 1:CAS:528:DyaK1MXntlCms7s%3D
-
Enright AJ, Iliopoulos I, Kyrpides NC, Ouzounis CA: Protein interaction maps for complete genomes based on gene fusion events. Nature. 1999, 402: 86-90. DOI: 10.1038/47056
-
(1999)
Nature
, vol.402
, pp. 86-90
-
-
Enright, A.J.1
Iliopoulos, I.2
Kyrpides, N.C.3
Ouzounis, C.A.4
-
47
-
-
0036081482
-
Predictome: a database of putative functional links between proteins
-
PID: 11752322, COI: 1:CAS:528:DC%2BD38Xht12rs7w%3D
-
Mellor JC, Yanai I, Clodfelter KH, Mintseris J, DeLisi C: Predictome: a database of putative functional links between proteins. Nucleic Acids Res. 2002, 30: 306-309. 10.1093/nar/30.1.306. DOI: 10.1093/nar/30.1.306
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 306-309
-
-
Mellor, J.C.1
Yanai, I.2
Clodfelter, K.H.3
Mintseris, J.4
DeLisi, C.5
-
48
-
-
0001291140
-
A powerful non-homology method for the prediction of operons in prokaryotes
-
PID: 12169563
-
Moreno-Hagelsieb G, Collado-Vides J: A powerful non-homology method for the prediction of operons in prokaryotes. Bioinformatics. 2002, 18 (Suppl 1): S329-S336. DOI: 10.1093/bioinformatics/18.suppl_1.S329
-
(2002)
Bioinformatics
, vol.18
, pp. S329-S336
-
-
Moreno-Hagelsieb, G.1
Collado-Vides, J.2
-
49
-
-
0242490780
-
Cytoscape: a software environment for integrated models of biomolecular interaction networks
-
PID: 14597658, COI: 1:CAS:528:DC%2BD3sXovFWrtr4%3D
-
Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T: Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 2003, 13: 2498-2504. 10.1101/gr.1239303. DOI: 10.1101/gr.1239303
-
(2003)
Genome Res
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
50
-
-
0031944976
-
An archaeal aerotaxis transducer combines subunit I core structures of eukaryotic cytochrome c oxidase and eubacterial methyl-accepting chemotaxis proteins
-
PID: 9537358, COI: 1:CAS:528:DyaK1cXisVShu7s%3D
-
Brooun A, Bell J, Freitas T, Larsen RW, Alam M: An archaeal aerotaxis transducer combines subunit I core structures of eukaryotic cytochrome c oxidase and eubacterial methyl-accepting chemotaxis proteins. J Bacteriol. 1998, 180: 1642-1646.
-
(1998)
J Bacteriol
, vol.180
, pp. 1642-1646
-
-
Brooun, A.1
Bell, J.2
Freitas, T.3
Larsen, R.W.4
Alam, M.5
-
51
-
-
0018577819
-
Chemosensory responses of Halobacterium halobium
-
PID: 533767, COI: 1:CAS:528:DyaL3cXptVGrtA%3D%3D
-
Schimz A, Hildebrand E: Chemosensory responses of Halobacterium halobium. J Bacteriol. 1979, 140: 749-753.
-
(1979)
J Bacteriol
, vol.140
, pp. 749-753
-
-
Schimz, A.1
Hildebrand, E.2
-
52
-
-
0037216619
-
Mutational analysis of a conserved signal-transducing element: the HAMP linker of the Escherichia colinitrate sensor NarX
-
PID: 12486044, COI: 1:CAS:528:DC%2BD3sXht1Crtw%3D%3D
-
Appleman JA, Stewart V: Mutational analysis of a conserved signal-transducing element: the HAMP linker of the Escherichia coli nitrate sensor NarX. J Bacteriol. 2003, 185: 89-97. 10.1128/JB.185.1.89-97.2003. DOI: 10.1128/JB.185.1.89-97.2003
-
(2003)
J Bacteriol
, vol.185
, pp. 89-97
-
-
Appleman, J.A.1
Stewart, V.2
-
53
-
-
0042561788
-
Probing conservation of HAMP linker structure and signal transduction mechanism through analysis of hybrid sensor kinases
-
PID: 12897007, COI: 1:CAS:528:DC%2BD3sXmt1Gjsbc%3D
-
Appleman JA, Chen LL, Stewart V: Probing conservation of HAMP linker structure and signal transduction mechanism through analysis of hybrid sensor kinases. J Bacteriol. 2003, 185: 4872-4882. 10.1128/JB.185.16.4872-4882.2003. DOI: 10.1128/JB.185.16.4872-4882.2003
-
(2003)
J Bacteriol
, vol.185
, pp. 4872-4882
-
-
Appleman, J.A.1
Chen, L.L.2
Stewart, V.3
-
54
-
-
0032766134
-
The cytoplasmic helical linker domain of receptor histidine kinase and methyl-accepting proteins is common to many prokaryotic signalling proteins
-
PID: 10418137, COI: 1:CAS:528:DyaK1MXkvVKhsbs%3D
-
Aravind L, Ponting CP: The cytoplasmic helical linker domain of receptor histidine kinase and methyl-accepting proteins is common to many prokaryotic signalling proteins. FEMS Microbiol Lett. 1999, 176: 111-116. 10.1016/S0378-1097(99)00197-4. DOI: 10.1111/j.1574-6968.1999.tb13650.x
-
(1999)
FEMS Microbiol Lett
, vol.176
, pp. 111-116
-
-
Aravind, L.1
Ponting, C.P.2
-
55
-
-
0037093395
-
A novel mode of sensory transduction in archaea: binding protein-mediated chemotaxis towards osmoprotectants and amino acids
-
PID: 12006484, COI: 1:CAS:528:DC%2BD38XktFChu7w%3D
-
Kokoeva MV, Storch KF, Klein C, Oesterhelt D: A novel mode of sensory transduction in archaea: binding protein-mediated chemotaxis towards osmoprotectants and amino acids. EMBO J. 2002, 21: 2312-2322. 10.1093/emboj/21.10.2312. DOI: 10.1093/emboj/21.10.2312
-
(2002)
EMBO J
, vol.21
, pp. 2312-2322
-
-
Kokoeva, M.V.1
Storch, K.F.2
Klein, C.3
Oesterhelt, D.4
-
56
-
-
0036346031
-
Transcription mapping as a tool in phage genomics: the case of the temperate Streptococcus thermophilusphage Sfi21
-
PID: 12036318, COI: 1:CAS:528:DC%2BD38XktVehtbg%3D
-
Ventura M, Foley S, Bruttin A, Chennoufi SC, Canchaya C, Brussow H: Transcription mapping as a tool in phage genomics: the case of the temperate Streptococcus thermophilus phage Sfi21. Virology. 2002, 296: 62-76. 10.1006/viro.2001.1331. DOI: 10.1006/viro.2001.1331
-
(2002)
Virology
, vol.296
, pp. 62-76
-
-
Ventura, M.1
Foley, S.2
Bruttin, A.3
Chennoufi, S.C.4
Canchaya, C.5
Brussow, H.6
-
57
-
-
0038724281
-
Prophage genomics
-
PID: 12794192, COI: 1:CAS:528:DC%2BD3sXlsVeht7k%3D
-
Canchaya C, Proux C, Fournous G, Bruttin A, Brussow H: Prophage genomics. Microbiol Mol Biol Rev. 2003, 67: 238-276. 10.1128/MMBR.67.2.238-276.2003. DOI: 10.1128/MMBR.67.2.238-276.2003
-
(2003)
Microbiol Mol Biol Rev
, vol.67
, pp. 238-276
-
-
Canchaya, C.1
Proux, C.2
Fournous, G.3
Bruttin, A.4
Brussow, H.5
-
58
-
-
0034734832
-
Comparative genomics of the late gene cluster from Lactobacillusphages
-
PID: 10998330, COI: 1:CAS:528:DC%2BD3cXms1Wisr8%3D
-
Desiere F, Pridmore RD, Brussow H: Comparative genomics of the late gene cluster from Lactobacillus phages. Virology. 2000, 275: 294-305. 10.1006/viro.2000.0498. DOI: 10.1006/viro.2000.0498
-
(2000)
Virology
, vol.275
, pp. 294-305
-
-
Desiere, F.1
Pridmore, R.D.2
Brussow, H.3
-
59
-
-
0035153828
-
Comparative phage genomics and the evolution of Siphoviridae: insights from dairy phages
-
PID: 11136444, COI: 1:CAS:528:DC%2BD3MXhtVCqsro%3D
-
Brussow H, Desiere F: Comparative phage genomics and the evolution of Siphoviridae: insights from dairy phages. Mol Microbiol. 2001, 39: 213-222. 10.1046/j.1365-2958.2001.02228.x. DOI: 10.1046/j.1365-2958.2001.02228.x
-
(2001)
Mol Microbiol
, vol.39
, pp. 213-222
-
-
Brussow, H.1
Desiere, F.2
-
60
-
-
0036226078
-
HF2: a double-stranded DNA tailed haloarchaeal virus with a mosaic genome
-
PID: 11967086, COI: 1:CAS:528:DC%2BD38XjsFGrtLc%3D
-
Tang SL, Nuttall S, Ngui K, Fisher C, Lopez P, Dyall-Smith M: HF2: a double-stranded DNA tailed haloarchaeal virus with a mosaic genome. Mol Microbiol. 2002, 44: 283-296. 10.1046/j.1365-2958.2002.02890.x. DOI: 10.1046/j.1365-2958.2002.02890.x
-
(2002)
Mol Microbiol
, vol.44
, pp. 283-296
-
-
Tang, S.L.1
Nuttall, S.2
Ngui, K.3
Fisher, C.4
Lopez, P.5
Dyall-Smith, M.6
-
61
-
-
0038054284
-
Relationships between fuselloviruses infecting the extremely thermophilic archaeon Sulfolobus: SSV1 and SSV2
-
PID: 12798235, COI: 1:CAS:528:DC%2BD3sXkt1ymurk%3D
-
Stedman KM, She Q, Phan H, Arnold HP, Holz I, Garrett RA, Zillig W: Relationships between fuselloviruses infecting the extremely thermophilic archaeon Sulfolobus: SSV1 and SSV2. Res Microbiol. 2003, 154: 295-302. 10.1016/S0923-2508(03)00074-3. DOI: 10.1016/S0923-2508(03)00074-3
-
(2003)
Res Microbiol
, vol.154
, pp. 295-302
-
-
Stedman, K.M.1
She, Q.2
Phan, H.3
Arnold, H.P.4
Holz, I.5
Garrett, R.A.6
Zillig, W.7
-
62
-
-
17444373082
-
Snapshot of a large dynamic replicon in a halophilic archaeon: megaplasmid or minichromosome?
-
PID: 9847077, COI: 1:CAS:528:DyaK1cXotVWgsrg%3D
-
Ng WV, Ciufo SA, Smith TM, Bumgarner RE, Baskin D, Faust J, Hall B, Loretz C, Seto J, Slagel J, et al: Snapshot of a large dynamic replicon in a halophilic archaeon: megaplasmid or minichromosome?. Genome Res. 1998, 8: 1131-1141.
-
(1998)
Genome Res
, vol.8
, pp. 1131-1141
-
-
Ng, W.V.1
Ciufo, S.A.2
Smith, T.M.3
Bumgarner, R.E.4
Baskin, D.5
Faust, J.6
Hall, B.7
Loretz, C.8
Seto, J.9
Slagel, J.10
-
63
-
-
0026178203
-
Structure of the gas vesicle plasmid in Halobacterium halobiuminversion isomers, inverted repeats, and insertion sequences
-
PID: 2050644, COI: 1:CAS:528:DyaK3MXltVOiu7c%3D
-
Ng WL, Kothakota S, DasSarma S: Structure of the gas vesicle plasmid in Halobacterium halobium inversion isomers, inverted repeats, and insertion sequences. J Bacteriol. 1991, 173: 3933-
-
(1991)
J Bacteriol
, vol.173
, pp. 3933
-
-
Ng, W.L.1
Kothakota, S.2
DasSarma, S.3
-
64
-
-
0036723852
-
R391: a conjugative integrating mosaic comprised of phage, plasmid, and transposon elements
-
PID: 12193633, COI: 1:CAS:528:DC%2BD38Xmslykurs%3D
-
Boltner D, MacMahon C, Pembroke JT, Strike P, Osborn AM: R391: a conjugative integrating mosaic comprised of phage, plasmid, and transposon elements. J Bacteriol. 2002, 184: 5158-5169. 10.1128/JB.184.18.5158-5169.2002. DOI: 10.1128/JB.184.18.5158-5169.2002
-
(2002)
J Bacteriol
, vol.184
, pp. 5158-5169
-
-
Boltner, D.1
MacMahon, C.2
Pembroke, J.T.3
Strike, P.4
Osborn, A.M.5
-
65
-
-
0036921671
-
When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum
-
PID: 12460536
-
Osborn AM, Boltner D: When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum. Plasmid. 2002, 48: 202-212. 10.1016/S0147-619X(02)00117-8. DOI: 10.1016/S0147-619X(02)00117-8
-
(2002)
Plasmid
, vol.48
, pp. 202-212
-
-
Osborn, A.M.1
Boltner, D.2
-
66
-
-
0024312654
-
IS421, a new insertion sequence in Escherichia coli
-
PID: 2542093, COI: 1:CAS:528:DyaK3cXntFSjug%3D%3D
-
Sato S, Nakada Y, Shiratsuchi A: IS421, a new insertion sequence in Escherichia coli. FEBS Lett. 1989, 249: 21-26. 10.1016/0014-5793(89)80007-9. DOI: 10.1016/0014-5793(89)80007-9
-
(1989)
FEBS Lett
, vol.249
, pp. 21-26
-
-
Sato, S.1
Nakada, Y.2
Shiratsuchi, A.3
-
67
-
-
0003804882
-
-
7, Oxford University Press, New York
-
Lewin B: Genes. 2000, New York: Oxford University Press, 7
-
(2000)
Genes
-
-
Lewin, B.1
-
68
-
-
0037174671
-
Transcriptional regulatory networks in Saccharomyces cerevisiae
-
PID: 12399584, COI: 1:CAS:528:DC%2BD38XotFSntL0%3D
-
Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, Hannett NM, Harbison CT, Thompson CM, Simon I, et al: Transcriptional regulatory networks in Saccharomyces cerevisiae. Science. 2002, 298: 799-804. 10.1126/science.1075090. DOI: 10.1126/science.1075090
-
(2002)
Science
, vol.298
, pp. 799-804
-
-
Lee, T.I.1
Rinaldi, N.J.2
Robert, F.3
Odom, D.T.4
Bar-Joseph, Z.5
Gerber, G.K.6
Hannett, N.M.7
Harbison, C.T.8
Thompson, C.M.9
Simon, I.10
-
69
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
PID: 9254694, COI: 1:CAS:528:DyaK2sXlvFyhu7w%3D
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997, 25: 3389-3402. 10.1093/nar/25.17.3389. DOI: 10.1093/nar/25.17.3389
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
70
-
-
0033976458
-
The Pfam protein families database
-
PID: 10592242, COI: 1:CAS:528:DC%2BD3cXhvVKjt7c%3D
-
Bateman A, Birney E, Durbin R, Eddy SR, Howe KL, Sonnhammer EL: The Pfam protein families database. Nucleic Acids Res. 2000, 28: 263-266. 10.1093/nar/28.1.263. DOI: 10.1093/nar/28.1.263
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 263-266
-
-
Bateman, A.1
Birney, E.2
Durbin, R.3
Eddy, S.R.4
Howe, K.L.5
Sonnhammer, E.L.6
-
71
-
-
0031614678
-
A hidden Markov model for predicting transmembrane helices in protein sequences
-
PID: 9783223, COI: 1:STN:280:DyaK1cvls1GmsA%3D%3D
-
Sonnhammer EL, von Heijne G, Krogh A: A hidden Markov model for predicting transmembrane helices in protein sequences. Proc Int Conf Intell Syst Mol Biol. 1998, 6: 175-182.
-
(1998)
Proc Int Conf Intell Syst Mol Biol
, vol.6
, pp. 175-182
-
-
Sonnhammer, E.L.1
von Heijne, G.2
Krogh, A.3
-
72
-
-
0034780030
-
Pcons: a neural-network-based consensus predictor that improves fold recognition
-
PID: 11604541, COI: 1:CAS:528:DC%2BD3MXnvV2rs7k%3D
-
Lundstrom J, Rychlewski L, Bujnicki J, Elofsson A: Pcons: a neural-network-based consensus predictor that improves fold recognition. Protein Sci. 2001, 10: 2354-2362. 10.1110/ps.08501. DOI: 10.1110/ps.08501
-
(2001)
Protein Sci
, vol.10
, pp. 2354-2362
-
-
Lundstrom, J.1
Rychlewski, L.2
Bujnicki, J.3
Elofsson, A.4
-
74
-
-
85182862719
-
-
Pcons. [http://www.sbc.su.se/~arne/pcons/]
-
Pcons. [
-
-
-
75
-
-
0036089481
-
MODBASE, a database of annotated comparative protein structure models
-
PID: 11752309, COI: 1:CAS:528:DC%2BD38Xht12ku7c%3D
-
Pieper U, Eswar N, Stuart AC, Ilyin VA, Sali A: MODBASE, a database of annotated comparative protein structure models. Nucleic Acids Res. 2002, 30: 255-259. 10.1093/nar/30.1.255. DOI: 10.1093/nar/30.1.255
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 255-259
-
-
Pieper, U.1
Eswar, N.2
Stuart, A.C.3
Ilyin, V.A.4
Sali, A.5
-
76
-
-
0033997036
-
Comparison of sequence profiles. Strategies for structural predictions using sequence information
-
PID: 10716175, COI: 1:CAS:528:DC%2BD3cXhs12ku7c%3D
-
Rychlewski L, Jaroszewski L, Li W, Godzik A: Comparison of sequence profiles. Strategies for structural predictions using sequence information. Protein Sci. 2000, 9: 232-241. DOI: 10.1110/ps.9.2.232
-
(2000)
Protein Sci
, vol.9
, pp. 232-241
-
-
Rychlewski, L.1
Jaroszewski, L.2
Li, W.3
Godzik, A.4
-
77
-
-
0033846832
-
Improving the quality of twilight-zone alignments
-
PID: 10975570, COI: 1:CAS:528:DC%2BD3cXmt1Oms7g%3D
-
Jaroszewski L, Rychlewski L, Godzik A: Improving the quality of twilight-zone alignments. Protein Sci. 2000, 9: 1487-1496. DOI: 10.1110/ps.9.8.1487
-
(2000)
Protein Sci
, vol.9
, pp. 1487-1496
-
-
Jaroszewski, L.1
Rychlewski, L.2
Godzik, A.3
-
79
-
-
0035843145
-
The protein-protein interaction map of Helicobacter pylori
-
PID: 11196647, COI: 1:CAS:528:DC%2BD3MXlvFSrtA%3D%3D
-
Rain JC, Selig L, De Reuse H, Battaglia V, Reverdy C, Simon S, Lenzen G, Petel F, Wojcik J, Schachter V, et al: The protein-protein interaction map of Helicobacter pylori. Nature. 2001, 409: 211-215. 10.1038/35051615. DOI: 10.1038/35051615
-
(2001)
Nature
, vol.409
, pp. 211-215
-
-
Rain, J.C.1
Selig, L.2
De Reuse, H.3
Battaglia, V.4
Reverdy, C.5
Simon, S.6
Lenzen, G.7
Petel, F.8
Wojcik, J.9
Schachter, V.10
-
80
-
-
0032605908
-
Structure classification-based assessment of CASP3 predictions for the fold recognition targets
-
Murzin AG: Structure classification-based assessment of CASP3 predictions for the fold recognition targets. Proteins. 1999, 88-103. 10.1002/(SICI)1097-0134(1999)37:3+<88::AID-PROT13>3.3.CO;2-V. Suppl 3
-
(1999)
Proteins.
, pp. 88-103
-
-
Murzin, A.G.1
-
81
-
-
0035970298
-
Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast
-
PID: 11273711, COI: 1:CAS:528:DC%2BD3MXitFymu7s%3D
-
Park J, Lappe M, Teichmann SA: Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast. J Mol Biol. 2001, 307: 929-938. 10.1006/jmbi.2001.4526. DOI: 10.1006/jmbi.2001.4526
-
(2001)
J Mol Biol
, vol.307
, pp. 929-938
-
-
Park, J.1
Lappe, M.2
Teichmann, S.A.3
-
82
-
-
85182816368
-
-
Cytoscape. [http://www.cytoscape.org]
-
Cytoscape.
-
-
|