메뉴 건너뛰기




Volumn 7, Issue 1, 2003, Pages 1-7

Differential expression of genes influenced by changing salinity using RNA arbitrarily primed PCR in the archaeal halophile Haloferax volcanii

Author keywords

Gene expression; Haloferax volcanii; Halophile; RAP PCR; Sensor kinase

Indexed keywords

ARCHAEA; EUKARYOTA; HALOFERAX VOLCANII; HALOPHILIC ARCHAEON; MAMMALIA;

EID: 0038049073     PISSN: 14310651     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00792-002-0289-0     Document Type: Article
Times cited : (18)

References (36)
  • 2
    • 0032897166 scopus 로고    scopus 로고
    • Structural and putative regulatory genes involved in cellulose synthesis in Rhizobium leguminosarum bv. trifolii
    • Ausmees N, Jonsson H, Hoglund S, Ljunggren H, Lindberg M (1999) Structural and putative regulatory genes involved in cellulose synthesis in Rhizobium leguminosarum bv. trifolii. Microbiology 145:1253-1262
    • (1999) Microbiology , vol.145 , pp. 1253-1262
    • Ausmees, N.1    Jonsson, H.2    Hoglund, S.3    Ljunggren, H.4    Lindberg, M.5
  • 4
    • 0034123438 scopus 로고    scopus 로고
    • Analysis of the SOS response in Salmonella enterica serovar Typhimurium using RNA fingerprinting by arbitrarily primed PCR
    • Benson NR, Wong RM-Y, McClelland M (2000) Analysis of the SOS response in Salmonella enterica serovar Typhimurium using RNA fingerprinting by arbitrarily primed PCR. J Bacteriol 182:3490-3497
    • (2000) J Bacteriol , vol.182 , pp. 3490-3497
    • Benson, N.R.1    Wong, R.M.-Y.2    McClelland, M.3
  • 5
    • 0035117042 scopus 로고    scopus 로고
    • RNA arbitrarily primed PCR survey of genes regulated by ToxR in the deep-sea bacterium Photobacterium profundum strain SS9
    • Bidle KA, Bartlett DH (2001) RNA arbitrarily primed PCR survey of genes regulated by ToxR in the deep-sea bacterium Photobacterium profundum strain SS9. J Bacteriol 183:1688-1693
    • (2001) J Bacteriol , vol.183 , pp. 1688-1693
    • Bidle, K.A.1    Bartlett, D.H.2
  • 6
    • 0033945631 scopus 로고    scopus 로고
    • Use of RNA arbitrarily primed-PCR fingerprinting to identity Vibrio cholerae genes differentially expressed in the host following infection
    • Chakrabortty A, Das S, Majumdar S, Mukhopadhyay K, Roychoudhury S, Chaudhuri K (2000) Use of RNA arbitrarily primed-PCR fingerprinting to identity Vibrio cholerae genes differentially expressed in the host following infection. Infect Immun 68:3878-3887
    • (2000) Infect Immun , vol.68 , pp. 3878-3887
    • Chakrabortty, A.1    Das, S.2    Majumdar, S.3    Mukhopadhyay, K.4    Roychoudhury, S.5    Chaudhuri, K.6
  • 7
    • 0000959078 scopus 로고
    • Solute concentration within cells of halophilic and non-halophilic bacteria
    • Christian JHB, Waltho JA (1962) Solute concentration within cells of halophilic and non-halophilic bacteria. Biochim Biophys Acta 65:506-508
    • (1962) Biochim Biophys Acta , vol.65 , pp. 506-508
    • Christian, J.H.B.1    Waltho, J.A.2
  • 8
    • 0027324844 scopus 로고
    • Transcriptional induction of genes encoding endoplasmic reticulum resident proteins requires a transmembrane protein kinase
    • Cox JS, Shamu CE, Walter P (1993) Transcriptional induction of genes encoding endoplasmic reticulum resident proteins requires a transmembrane protein kinase. Cell 73:1197-1206
    • (1993) Cell , vol.73 , pp. 1197-1206
    • Cox, J.S.1    Shamu, C.E.2    Walter, P.3
  • 10
    • 0030760841 scopus 로고    scopus 로고
    • Evolutionary divergence and salinity-mediated selection in halophilic Archaea
    • Dennis PP, Shimmin LC (1997) Evolutionary divergence and salinity-mediated selection in halophilic Archaea. Microbiol Mol Biol Rev 61:90-104
    • (1997) Microbiol Mol Biol Rev , vol.61 , pp. 90-104
    • Dennis, P.P.1    Shimmin, L.C.2
  • 11
    • 0030060635 scopus 로고    scopus 로고
    • Differentially transcribed regions of Haloferax volcanii genome depending on the medium salinity
    • Ferrer C, Mojica FJM, Juez G, Rodriguez-Valera F (1996) Differentially transcribed regions of Haloferax volcanii genome depending on the medium salinity. J Bacteriol 178:309-313
    • (1996) J Bacteriol , vol.178 , pp. 309-313
    • Ferrer, C.1    Mojica, F.J.M.2    Juez, G.3    Rodriguez-Valera, F.4
  • 12
    • 0031685978 scopus 로고    scopus 로고
    • Optimization of differential display of prokaryotic mRNA: Application to pure culture and soil microcosms
    • Fleming JT, Yao W-H, Sayler GS (1998) Optimization of differential display of prokaryotic mRNA: application to pure culture and soil microcosms. Appl Environ Microbiol 64:3698-3706
    • (1998) Appl Environ Microbiol , vol.64 , pp. 3698-3706
    • Fleming, J.T.1    Yao, W.-H.2    Sayler, G.S.3
  • 13
    • 0025259313 scopus 로고
    • Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
    • Karlin S, Altschul SF (1990) Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes. Proc Natl Acad Sci USA 87:2264-2268
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 2264-2268
    • Karlin, S.1    Altschul, S.F.2
  • 14
    • 0027416489 scopus 로고
    • Identification of a serine/threonine-specific protein phosphatase from the archaebacterium Sulfolobus solfataricus
    • Kennelly PJ, Oxenrider KA, Leng J, Cantwell JS, Zhao N (1993) Identification of a serine/threonine-specific protein phosphatase from the archaebacterium Sulfolobus solfataricus. J Biol Chem 268:6505-6510
    • (1993) J Biol Chem , vol.268 , pp. 6505-6510
    • Kennelly, P.J.1    Oxenrider, K.A.2    Leng, J.3    Cantwell, J.S.4    Zhao, N.5
  • 15
    • 0016139829 scopus 로고
    • Salt-dependent properties of proteins from extremely halophilic bacteria
    • Lanyi J (1974) Salt-dependent properties of proteins from extremely halophilic bacteria. Bacteriol Rev 38:272-290
    • (1974) Bacteriol Rev , vol.38 , pp. 272-290
    • Lanyi, J.1
  • 16
    • 0011729340 scopus 로고
    • Bacteriorhodopsin and related light energy convectors
    • Ernster, L (ed) Elsevier, Amsterdam
    • Lanyi JK (1984) Bacteriorhodopsin and related light energy convectors. In: Ernster, L (ed) Bioenergetics. Elsevier, Amsterdam, pp 315-348
    • (1984) Bioenergetics , pp. 315-348
    • Lanyi, J.K.1
  • 17
    • 0028832204 scopus 로고
    • Isolation and cloning of a protein-serine/threonine phosphatase from an archaeon
    • Leng J, Cameron AJ, Buckel S, Kennelly PJ (1995) Isolation and cloning of a protein-serine/threonine phosphatase from an archaeon. J Bacteriol 177:6510-6517
    • (1995) J Bacteriol , vol.177 , pp. 6510-6517
    • Leng, J.1    Cameron, A.J.2    Buckel, S.3    Kennelly, P.J.4
  • 18
    • 0031722706 scopus 로고    scopus 로고
    • Novel families of putative protein kinases in Bacteria and Archaea: Evolution of the "eukaryotic" protein kinase superfamily
    • Leonard CJ, Aravind L, Koonin EV (1998) Novel families of putative protein kinases in Bacteria and Archaea: evolution of the "eukaryotic" protein kinase superfamily. Genome Res 8:1038-1047
    • (1998) Genome Res , vol.8 , pp. 1038-1047
    • Leonard, C.J.1    Aravind, L.2    Koonin, E.V.3
  • 20
    • 0010704785 scopus 로고
    • + active transport in the archaebacterium Haloferax volcanii
    • + active transport in the archaebacterium Haloferax volcanii. Arch Microbiol 151:530-536
    • (1989) Arch Microbiol , vol.151 , pp. 530-536
    • Meury, J.1    Kohiyama, M.2
  • 21
    • 0030931683 scopus 로고    scopus 로고
    • Osmotically induced response in representatives of halophilic prokaryotes: The bacterium Halomonas elongata and the archaeon Haloferax volcanii
    • Mojica FJM, Cisneros E, Ferrer C, Rodriguez-Valera F, Juez G (1997) Osmotically induced response in representatives of halophilic prokaryotes: the bacterium Halomonas elongata and the archaeon Haloferax volcanii. J Bacteriol 179:5471-5481
    • (1997) J Bacteriol , vol.179 , pp. 5471-5481
    • Mojica, F.J.M.1    Cisneros, E.2    Ferrer, C.3    Rodriguez-Valera, F.4    Juez, G.5
  • 22
    • 0027305620 scopus 로고
    • A transmembrane protein with cdc2/CDC28-related kinase activity is required for signaling from the ER to the nucleus
    • Mori K, Ma W, Gething MJ, Sambrook JF (1993) A transmembrane protein with cdc2/CDC28-related kinase activity is required for signaling from the ER to the nucleus. Cell 74:743-756
    • (1993) Cell , vol.74 , pp. 743-756
    • Mori, K.1    Ma, W.2    Gething, M.J.3    Sambrook, J.F.4
  • 23
    • 34250398425 scopus 로고
    • Halobacterium volcanii spec. nov., a Dead Sea halobacterium with a moderate salt requirement
    • Mullakhanbhai MF, Larsen H (1975) Halobacterium volcanii spec. nov., a Dead Sea halobacterium with a moderate salt requirement. Arch Microbiol 104:207-214
    • (1975) Arch Microbiol , vol.104 , pp. 207-214
    • Mullakhanbhai, M.F.1    Larsen, H.2
  • 24
    • 0035024983 scopus 로고    scopus 로고
    • Screening for ribosomal-based false positives following prokaryotic mRNA differential display
    • Nage AC, Fleming JT, Sayler GS, Beattie KL (2001) Screening for ribosomal-based false positives following prokaryotic mRNA differential display. Biotechniques 30:988-996
    • (2001) Biotechniques , vol.30 , pp. 988-996
    • Nage, A.C.1    Fleming, J.T.2    Sayler, G.S.3    Beattie, K.L.4
  • 25
    • 0013694657 scopus 로고
    • Isolation of genomic and plasmid DNAs from Halobacterium halobium
    • Robb FT, Sowers KR, DasSarma S, Place AR, Fleischmann EM, Schreier HJ (eds.) Cold Spring Harbor Press, Cold Spring Harbor, NY
    • Ng W-L, Yang C-F, Halladay JT, Arora P, DasSarma S (1995) Isolation of genomic and plasmid DNAs from Halobacterium halobium. In: Robb FT, Sowers KR, DasSarma S, Place AR, Fleischmann EM, Schreier HJ (eds.) Archaea: a laboratory manual. Cold Spring Harbor Press, Cold Spring Harbor, NY, pp 179-184
    • (1995) Archaea: A Laboratory Manual , pp. 179-184
    • Ng, W.-L.1    Yang, C.-F.2    Halladay, J.T.3    Arora, P.4    DasSarma, S.5
  • 26
    • 12944270421 scopus 로고    scopus 로고
    • Genome sequence of Halobacterium species NRC-1
    • Ng WV, et al (2000) Genome sequence of Halobacterium species NRC-1. Proc Natl Acad Sci USA 97:12176-12181
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 12176-12181
    • Ng, W.V.1
  • 27
    • 0032695865 scopus 로고    scopus 로고
    • Sequence analysis of three Bacillus cereus loci carrying PlcR-regulated genes encoding degradative enzymes and enterotoxin
    • Okstad OA, Gominet M, Purnelle B, Rose M, Lereclus D, Kolsto A-B (1999) Sequence analysis of three Bacillus cereus loci carrying PlcR-regulated genes encoding degradative enzymes and enterotoxin. Microbiology 145:3129-3138
    • (1999) Microbiology , vol.145 , pp. 3129-3138
    • Okstad, O.A.1    Gominet, M.2    Purnelle, B.3    Rose, M.4    Lereclus, D.5    Kolsto, A.-B.6
  • 28
    • 0021766191 scopus 로고
    • Protein phosphorylation in the Archaebacterium Sulfolobus acidocaldarius
    • Skorko R (1984) Protein phosphorylation in the Archaebacterium Sulfolobus acidocaldarius. Eur J Biochem 145:617-622
    • (1984) Eur J Biochem , vol.145 , pp. 617-622
    • Skorko, R.1
  • 29
    • 0028964131 scopus 로고
    • Identification of a eukaryotic-like protein kinase gene in Archaebacteria
    • Smith RF, King KY (1995) Identification of a eukaryotic-like protein kinase gene in Archaebacteria. Protein Sci 4:126-129
    • (1995) Protein Sci , vol.4 , pp. 126-129
    • Smith, R.F.1    King, K.Y.2
  • 30
    • 0030909924 scopus 로고    scopus 로고
    • Protein-tyrosine phosphorylation in the Archaea
    • Smith SC, Kennelly PJ, Potts M (1997) Protein-tyrosine phosphorylation in the Archaea. J Bacteriol 179:2418-2420
    • (1997) J Bacteriol , vol.179 , pp. 2418-2420
    • Smith, S.C.1    Kennelly, P.J.2    Potts, M.3
  • 31
    • 0024487623 scopus 로고
    • Turning off flagellum rotation requires the pleiotrophic gene pleD: PleA, pleC and pleD define two morphogenic pathways in Caulobacter crescentus
    • Sommer JM, Newton A (1989) Turning off flagellum rotation requires the pleiotrophic gene pleD: pleA, pleC and pleD define two morphogenic pathways in Caulobacter crescentus. J Bacteriol 171:392-401
    • (1989) J Bacteriol , vol.171 , pp. 392-401
    • Sommer, J.M.1    Newton, A.2
  • 32
    • 0020016635 scopus 로고
    • Bacteriorhodopsin and related pigments in halobacteria
    • Stoeckenius W, Bogomolni RA (1982) Bacteriorhodopsin and related pigments in halobacteria. Annu Rev Biochem 51:587-611
    • (1982) Annu Rev Biochem , vol.51 , pp. 587-611
    • Stoeckenius, W.1    Bogomolni, R.A.2
  • 33
    • 0032990441 scopus 로고    scopus 로고
    • PAS domains: Internal sensors of oxygen, redox potential, and light
    • Taylor BL, Zhulin IB (1999) PAS domains: internal sensors of oxygen, redox potential, and light. Microbiol Mol Biol Rev 63:479-506
    • (1999) Microbiol Mol Biol Rev , vol.63 , pp. 479-506
    • Taylor, B.L.1    Zhulin, I.B.2
  • 34
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 35
    • 0032525990 scopus 로고    scopus 로고
    • A stress response pathway from the endoplasmic reticulum to the nucleus requires a novel bifunctional protein kinase/endoribonuclease (Ire1p) in mammalian cells
    • Tirasophon W, Welihinda AA, Kaufman RJ (1998) A stress response pathway from the endoplasmic reticulum to the nucleus requires a novel bifunctional protein kinase/endoribonuclease (Ire1p) in mammalian cells. Genes Dev 12:1812-1824
    • (1998) Genes Dev , vol.12 , pp. 1812-1824
    • Tirasophon, W.1    Welihinda, A.A.2    Kaufman, R.J.3
  • 36
    • 0028008621 scopus 로고
    • Stress-inducible gene of Salmonella typhimurium identified by arbitrarily primed PCR of RNA
    • Wong KK, McClelland M (1994) Stress-inducible gene of Salmonella typhimurium identified by arbitrarily primed PCR of RNA. Proc Natl Acad Sci USA 91:639-643
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 639-643
    • Wong, K.K.1    McClelland, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.