Analysis of the cytosolic proteome of Halobacterium salinarum and its implication for genome annotation

Proteomics

Volumn 5, Issue 1, 2005, Pages 168-179

  Tebbe, Andreas ^a   Klein, Christian ^a   Bisle, Birgit ^a   Siedler, Frank ^a   Scheffer, Beatrix ^a   Garcia Rizo, Carolina ^a   Wolfertz, Jan ^a   Hickmann, Volker ^a   Pfeiffer, Friedhelm ^a   Oesterhelt, Dieter ^a  

^a MAX PLANCK INSTITUTE OF BIOCHEMISTRY   (Germany)

Author keywords

Halobacterium salinarum; Matrix assisted laser desorption ionization mass spectrometry; Peptide mass fingerprinting; Reference map; Two dimensional gel electophoresis

Indexed keywords

PROTEOME;

ARTICLE; BACTERIAL CHROMOSOME; BACTERIAL GENOME; CYTOSOL; HALOBACTERIUM SALINARUM; HALOPHILIC BACTERIUM; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MOLECULAR WEIGHT; NONHUMAN; OPEN READING FRAME; PLASMID; PRIORITY JOURNAL; PROTEIN PROCESSING; PROTEOMICS; SILVER STAINING; START CODON; TANDEM MASS SPECTROMETRY; TWO DIMENSIONAL GEL ELECTROPHORESIS;

BACTERIAL PROTEINS; BASE COMPOSITION; CHROMOSOMES, BACTERIAL; CYTOSOL; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; GENOME, BACTERIAL; HALOBACTERIUM SALINARUM; MEMBRANE PROTEINS; OPEN READING FRAMES; PROTEOME; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

ARCHAEA; BACTERIA (MICROORGANISMS); HALOBACTERIUM SALINARUM; HALOPHILIC ARCHAEON;

EID: 19944433449     PISSN: 16159853     EISSN: None     Source Type: Journal    
DOI: 10.1002/pmic.200400910     Document Type: Article

References (44)

1. Oren, A., Truper, H. G., FEMS Microbiol. Lett. 1990, 70, 33-36.
2. Oren, A., FEMS Microbiol. Rev. 1994, 13, 415-439.
3. Hartmann, R., Sickinger, H. D., Oesterhelt, D., Proc. Natl. Acad. Sci. U. S. A. 1980, 77, 3821-3825.
4. Hochstein, L. I., Lang, F., Arch. Biochem. Biophys. 1991, 288, 380-385.
5. Ruepp, A., Muller, H. N., Lottspeich, F., Soppa, J., J. Bacteriol. 1995, 177, 1129-1136.
6. Oesterhelt, D., Curr. Opin. Struct. Biol. 1998, 8, 489-500.
7. Marwan, W., Oesterhelt, D., ASM News 2000, 66, 83-89.
8. Ng, W. V., Kennedy, S. P., Mahairas, G. G., Berquist, B. et al., Proc. Natl. Acad. Sci. U. S. A. 2000, 97, 12176-12181.
9. Pappin, D. J. C., Hojrup, P., Bleasby, A. J., Curr. Biol. 1993, 3, 327-332.
10. Yates, J. R., Speicher, S., Griffin, P. R., Hunkapiller, T., Anal. Biochem. 1993, 214, 397-408.
11. Mann, M., Hojrup, P., Roepstorff, P., Biol. Mass Spectrom. 1993, 22, 338-345.
12. Gevaert, K., Vandekerckhove, J., Electrophoresis 2000, 21, 1145-1154.
13. Oesterhelt, D., Stoeckenius, W., Methods Enzymol. 1974, 31, 667-678.
14. Oesterhelt, D., Krippahl, G., Ann. Microbiol. 1983, B134, 137-150.
15. Kupper, J., Marwan, W., Typke, D., Grunberg, H., et al., J. Bacteriol. 1994, 176, 5184-5187.
16. Kamekura, M., Oesterhelt, D., Wallace, R., Anderson, P., Kushner, D. J., Appl. Environ. Microbiol. 1988, 54, 990-995.
17. Michel, H., Oesterhelt, D., FEBS Lett. 1976, 65, 175-178.
18. Gorg, A., Boguth, G., Obermaier, C., Posch, A., Weiss, W., Electrophoresis 1995, 16, 1079-1086.
19. Mortz, E., Krogh, T. N., Vorum, H., Gorg, A., Proteomics 2001, 1, 1359-1363.
20. Gharahdaghi, F., Weinberg, C. R., Meagher, D. A., Imai, B. S., Mische, S. M., Electrophoresis 1999, 20, 601-605.
21. Zubarev, R. A., Hakansson, P., Sundqvist, B., Anal. Chem. 1996, 68, 4060-4063.
22. Perkins, D. N., Pappin, D. J. C., Creasy, D. M., Cottrell, J. S., Electrophoresis 1999, 20, 3551-3567.
23. Frishman, D., Mironov, A., Mewes, H. W., Gelfand, M., Nucleic Acids Res. 1998, 26, 2941-2947.
24. Salzberg, S. L., Delcher, A. L., Kasif, S., White, O., Nucleic Acids Res. 1998, 26, 544-548.
25. Delcher, A. L., Harmon, D., Kasif, S., White, O., Salzberg, S. L., Nucleic Acids Res. 1999, 27, 4636-4641.
26. Gasteiger, E., Gattiker, A., Hoogland, C., Ivanyi, I. et al., Nucleic Acids Res. 2003, 31, 3784-3788.
27. Ihaka, R., Gentleman, R., J. Comput. Graph. Stat. 1996, 5, 299-314.
28. VanBogelen, R. A., Abshire, K. Z., Moldover, B., Olson, E. R., Neidhardt, F. C., Electrophoresis 1997, 18, 1243-1251.
29. Link, A. J., Hays, L. G., Carmack, E. B., Yates, J. R., Electrophoresis 1997, 18, 1314-1334.
30. Link, A. J., Robison, K., Church, G. M., Electrophoresis 1997, 18, 1259-1313.
31. Wasinger, V. C., Bjellqvist, B., Humphery-Smith, I., Electrophoresis 1997, 18, 1373-1383.
32. Buttner, K., Bernhardt, J., Scharf, C., Schmid, R. et al., Electrophoresis 2001, 22, 2908-2935.
33. Britton, K. L., Stillman, T. J., Yip, K. S. P., Forterre, P. et al., J. Biol. Chem. 1998, 273, 9023-9030.
34. Lanyi, J. K., Bacteriol. Rev. 1974, 38, 272-290.
35. Madern, D., Ebel, C., Zaccai, G., Extremophiles 2000, 4, 91-98.
36. Krogh, A., Larsson, B., von Heijne, G., Sonnhammer, E. L. L., J. Mol. Biol. 2001, 305, 567-580.
37. McCarthy, J., Hopwood, F., Oxley, D., Laver, M. et al., J. Proteome Res. 2003, 2, 239-242.
38. Pfeifer, F., Betlach, M., Mol. Gen. Genet. 1985, 198, 449-455.
39. Kennedy, S. P., Ng, W. V., Salzberg, S. L., Hood, L., Das-Sarma, S., Genome Res. 2001, 11, 1641-1650.
40. Cho, C. W., Lee, S. H., Choi, J., Park, S. J. et al., Proteomics 2003, 3, 2325-2329.
41. Klein, C., Garzia-Rizo, C., Zischka, H., Pfeiffer, F. et al., Proteomics DOI 10.1002/pmic.200400943.
42. Nordhoff, E., Schurenberg, M., Thiele, G., Lubbert, C. et al., Int. J. Mass Spectrom. 2003, 226, 163-180.
43. Gustafsson, M., Hirschberg, D., Palmberg, C., Jörnvall, H., Bergman, T., Anal. Chem. 2004, 76, 345-350.
44. Goo, Y. A., Yi, E. C., Baliga, N. S., Tao, W. G. A. et al., Mol. Cell. Proteomics 2003, 2, 506-524.