AggA is required for aggregation and increased biofilm formation of a hyper-aggregating mutant of Shewanella oneidensis MR-1

Microbiology

Volumn 152, Issue 3, 2006, Pages 721-729

  De Windt, Wim ^a   Gao, Haichun ^b   Krömer, Wolfgang ^c   Van Damme, Petra ^a   Dick, Jan ^a   Mast, Jan ^d   Boon, Nico ^a   Zhou, Jizhong ^b   Verstraete, Willy ^a  

^a GHENT UNIVERSITY   (Belgium)

^b OAK RIDGE NATIONAL LABORATORY   (United States)

^c Eurogentec Proteomics GmbH   (Germany)

^d VETERINARY AND AGROCHEMICAL RESEARCH CENTRE   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; CELL SURFACE PROTEIN; GLASS; OUTER MEMBRANE PROTEIN; RIFAMPICIN;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ADHERENCE; BACTERIUM CULTURE; BACTERIUM ISOLATION; BACTERIUM MUTANT; BIOFILM; CELL AGGREGATION; CONTROLLED STUDY; DNA MICROARRAY; EXPRESSION VECTOR; GENE EXPRESSION; GENE INSERTION; GENE LOCUS; HYPOTHESIS; INCUBATION TIME; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DEGRADATION; PROTEIN EXPRESSION; PROTEOMICS; SHEWANELLA ONEIDENSIS; WILD TYPE;

BACTERIAL ADHESION; BACTERIAL PROTEINS; BIOFILMS; GENE EXPRESSION REGULATION, BACTERIAL; MUTATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PROTEOMICS; SHEWANELLA;

BACTERIA (MICROORGANISMS); SHEWANELLA ONEIDENSIS; SHEWANELLA ONEIDENSIS MR-1;

EID: 33645096137     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.28204-0     Document Type: Article

References (37)

1. Alexeyev, M. F. (1999). The pKNOCK series of broad-host-range mobilizable suicide vectors for gene knockout and targeted DNA insertion into the chromosome of Gram-negative bacteria. Biotechniques 26, 824-828.
2. Artsimovitch, I., Patlan, V., Sekine, S. I., Vassylyeva, M. N., Hosaka, T., Ochi, K, Yokoyama, S. & Vassylyev, D. G. (2004) Structural basis for transcription regulation by alarmone ppGpp. Cell 117, 299-310.
3. Bagge, D., Hjelm, M., Johansen, C., Huber, I. & Grami, L. (2001). Shewanella putrefaciens adhesion and biofilm formation on food processing surfaces. Appl Environ Microbiol 67, 2319-2325.
4. Bechet, M. & Blondeau, R. (2003). Factors associated with the adherence and biofilm formation by Aeromonas caviae on glass surfaces. J Appl Microbiol 94, 1072-1078.
5. Bieber, D., Ramer, S. W., Wu, C. Y., Murray, W. J., Tobe, T., Fernandez, R. & Schoolnik, G. K. (1998). Type IV pili, transient bacterial aggregates, and virulence of enteropathogenic Escherichia coli. Science 280, 2114-2118.
6. Bossier, P., Top, E. M., Huys, G., Kersters, K., Boonaert, C. J. P., Rouxhet, P. G. & Verstraete, W. (2000). Modification of the aggregation behaviour of the environmental Ralstonia eutropha-like strain AE815 is reflected by both surface hydrophobicity and amplified fragment length polymorphism (AFLP) patterns. Environ Microbiol 2, 51-58.
7. Caccavo, F., Schamberger, P. C., Keiding, K. & Nielsen, P. H. (1997). Role of hydrophobicity in adhesion of the dissimilatory Fe(III)-reducing bacterium Shewanella alga to amorphous Fe(III) oxide. Appl Environ Microbiol 63, 3837-3843.
8. Chiavelli, D. A., Marsh, J. W. & Taylor, R. K. (2001). The mannose-sensitive hemagglutinin of Vibrio cholerae promotes adherence to zooplankton. Appl Environ Microbiol 67, 3220-3225.
9. Czeczulin, J. R., Balepur, S., Hicks, S., Phillips, A., Hall, R., Kothary, M. H., Navarro-Garcia, F. & Nataro, J. P. (1997). Aggregative adherence fimbria II, a second fimbrial antigen mediating aggregative adherence in enteroaggregative Escherichia coli. Infect Immun 65, 4135-4145.
10. De Vriendt, K., Theunissen, S., Carpentier, W., De Smet, L., Devreese, B. & Van Beeumen, J. (2005). Proteomics of Shewanella oneidensis MR-1 biofilm reveals differentially expressed proteins, including AggA and RibB. Proteomics 5, 1308-1316.
11. Dubiel, M., Hsu, C. H., Chien, C. C., Mansfeld, F. & Newman, D. K. (2002). Microbial iron respiration can protect steel from corrosion. Appl Environ Microbiol 68, 1440-1445.
12. Espinosa-Urgel, M., Salido, A. & Ramos, J. L. (2000). Genetic analysis of functions involved in adhesion of Pseudomonas putida to seeds. J Bacteriol 182, 2363-2369.
13. Farrell, A. & Quilty, B. (2002). Substrate-dependent autoaggregation of Pseudomonas putida CP1 during the degradation of monochlorophenols and phenol. J Ind Microbiol Biotechnol 28, 316-324.
14. Gao, H., Wang, S., Liu, X., Yan, T., Wu, L., Alm, E., Arkin, A., Thompson, D. K. & Zhou, J. (2004). Global transcriptome analysis of the heat shock response of Shewanella oneidensis. J Bacteriol 186, 7796-7803.
15. Hegde, P., Qi, R., Abernathy, K. & 7 other authors (2000). A concise guide to cDNA microarray analysis. Biotechniques 29, 548-562.
16. Heidelberg, J. F., Paulsen, I. T., Nelson, K. E. & 40 other authors (2002). Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis. Nat Biotechnol 20, 1118-1123.
17. Hinsa, S. M., Espinosa-Urgel, M., Ramos, J. L. & O'Toole, G. A. (2003). Transition from reversible to irreversible attachment during biofilm formation by Pseudomonas fluorescens WCS365 requires an ABC transporter and a large secreted protein. Mol Microbiol 49, 905-918.
18. Lee, A. K. & Newman, D. K. (2003). Microbial iron respiration: impacts on corrosion processes. Appl Microbiol Biotechnol 62, 134-139.
19. Little, B., Wagner, P., Hart, K., Ray, R., Lavoie, D., Nealson, K. & Aguilar, C. (1998). The role of biomineralization in microbiologically influenced corrosion. Biodegradation 9, 1-10.
20. Lower, S. K., Hochella, M. F. & Beveridge, T. J. (2001). Bacterial recognition of mineral surfaces: nanoscale interactions between Shewanella and α-FeOOH. Science 292, 1360-1363.
21. Malik, A. & Kakii, K. (2003). Intergeneric coaggregations among Oligotropha carboxidovorans and Acinetobacter species present in activated sludge. FEMS Microbiol Lett 224, 23-28.
22. Malik, A., Sakamoto, M., Ono, T. & Kakii, K. (2003). Coaggregation between Acinetobacter johnsonii S35 and Microbacterium esteraromaticum strains isolated from sewage activated sludge. J Biosci Bioeng 96, 10-15.
23. Marx, C. J. & Lidstrom, M. E. (2001). Development of improved versatile broad-host-range vectors for use in methylotrophs and other Gram-negative bacteria. Microbiology 147, 2065-2075.
24. Molloy, M. P., Herbert, B. R., Walsh, B. J., Tyler, M. I., Traini, M., Sanchez, J. C., Hochstrasser, D. F., Williams, K. L. & Gooley, A. A. (1998). Extraction of membrane proteins by differential solubilization for separation using two-dimensional gel electrophoresis. Electrophoresis 19, 837-844.
25. Nataro, J. P., Deng, Y. K., Giron, J. A., Savarino, S. J., Kothary, M. H. & Hall, R. (1993). Aggregative adherence fimbria-I expression in enteroaggregative Escherichia coli requires two unlinked plasmid regions. Infect Immun 61, 1126-1131.
26. Olsen, A., Jonsson, A. & Normark, S. (1989). Fibronectin binding mediated by a novel class of surface organelles on Escherichia coli. Nature 338, 652-655.
27. O'Toole, G., Kaplan, H. B. & Kolter, R. (2000). Biofilm formation as microbial development. Annu Rev Microbiol 54, 49-79.
28. Sambrook, J. & Russell, D. W. (2001). Molecular Cloning: a Laboratory Manual, 3rd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
29. Schembri, M. A., Christiansen, G. & Klemm, P. (2001). FimH-mediated autoaggregation of Escherichia coli. Mol Microbiol 41, 1419-1430.
30. Schembri, M. A., Hjerrild, L., Gjermansen, M. & Klemm, P. (2003a). Differential expression of the Escherichia coli autoaggregation factor antigen 43. J Bacteriol 185, 2236-2242.
31. Schembri, M. A., Kjaergaard, K. & Klemm, P. (2003b). Global gene expression in Escherichia coli biofilms. Mol Microbiol 48, 253-267.
32. Schena, M., Shalon, D., Heller, R., Chai, A., Brown, P. O. & Davis, R. W. (1996). Parallel human genome analysis: microarray-based expression monitoring of 1000 genes. Proc Natl Acad Sci U S A 93, 10614-10619.
33. Schreiber, W., Stone, K. D., Strong, M. A., DeTolla, L. J., Hoppert, M. & Donnenberg, M. S. (2002). BfpU, a soluble protein essential for type IV pilus biogenesis in enteropathogenic Escherichia coli. Microbiology 148, 2507-2518.
34. Semple, K. M. & Westlake, D. W. S. (1987). Characterization of iron-reducing Alteromonas putrefaciens strains from oil field fluids. Can J Microbiol 33, 366-371.
35. Thompson, D. K., Beliaev, A. S., Giometti, C. S. & 9 other authors (2002). Transcriptional and proteomic analysis of a ferric uptake regulator (fur) mutant of Shewanella oneidensis: Possible involvement of fur in energy metabolism, transcriptional regulation, and oxidative stress. Appl Environ Microbiol 68, 1419-1430.
36. Thormann, K. M., Saville, R. M., Shukla, S., Pelletier, D. A. & Spormann, A. M. (2004). Initial phases of biofilm formation in Shewanella oneidensis MR-1. J Bacteriol 186, 8096-8104.
37. Thormann, K. M., Saville, R. M., Shukla, S. & Spormann, A. M. (2005). Induction of rapid detachment in Shewanella oneidensis MR-1 biofilms. J Bacteriol 187, 1014-1021.