Protein cell surface display in Gram-positive bacteria: From single protein to macromolecular protein structure

FEMS Microbiology Letters

Volumn 256, Issue 1, 2006, Pages 1-15

  Desvaux, Mickaël ^a   Dumas, Emilie ^a   Chafsey, Ingrid ^a   Hébraud, Michel ^a  

^a CEMAGREF   (France)

Author keywords

Bacterial protein secretion; Bacterial surface organelle; Cell surface display; Cell wall anchoring; Gram positive bacteria; Membrane protein; S layer protein

Indexed keywords

CELLULOSOME; CHOLINE; LIPOPROTEIN; MEMBRANE PROTEIN; NUCLEAR PROTEIN; PEPTIDOGLYCAN; SORTASE; TEICHOIC ACID;

BACTERIAL MEMBRANE; BIOGENESIS; CELL ADHESION; CELL MEMBRANE; CELL SURFACE; CYTOPLASM; ESCHERICHIA COLI; FLAGELLUM; GRAM POSITIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROKARYOTE; PROTEIN BINDING; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN STRUCTURE; SHORT SURVEY;

AMINO ACID SEQUENCE; AMINOACYLTRANSFERASES; BACTERIAL PROTEINS; CELL MEMBRANE; CELL WALL; CELLULOSOMES; CHOLINE; CYSTEINE ENDOPEPTIDASES; FIMBRIAE, BACTERIAL; FLAGELLA; GRAM-POSITIVE BACTERIA; LIPOPROTEINS; MEMBRANE GLYCOPROTEINS; MEMBRANE PROTEINS; MOLECULAR SEQUENCE DATA; MUCOPROTEINS; PROTEIN BINDING; PROTEIN STRUCTURE, QUATERNARY;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; POSIBACTERIA; PROKARYOTA;

EID: 33645049557     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2006.00122.x     Document Type: Short Survey

References (96)

1. Aldridge P Hughes KT 2001 How and when are substrates selected for Type III secretion? Trends Microbiol 9 209 214
2. Avall-Jaaskelainen S Palva A 2005 Lactobacillus surface layers and their applications FEMS Microbiol Rev 29 511 529
3. Baba T Schneewind O 1996 Target cell specificity of a bacteriocin molecule a C-terminal signal directs lysostaphin to the cell wall of Staphylococcus aureus EMBO J 15 4789 4797
4. Bardy SL Sandy YM Jarrell KF 2003 Prokaryotic motility structures Microbiology 149 295 304
5. Bateman A Coin L Durbin R et al 2004 The Pfam protein families database Nucleic Acids Res 32 D138 141
6. Bayer EA Belaich JP Shoham Y Lamed R 2004 The cellulosomes multienzyme machines for degradation of plant cell wall polysaccharides Annu Rev Microbiol 58 521 554
7. Bayer EA Shimon LJ Shoham Y Lamed R 1998 Cellulosomes - structure and ultrastructure J Struct Biol 124 221 234
8. Bergmann S Rohde M Chhatwal GS Hammerschmidt S 2001 α-Enolase of Streptococcus pneumoniae is a plasmin(ogen)-binding protein displayed on the bacterial cell surface Mol Microbiol 40 1273 1287
9. Botero LM Brown KB Brumefield S Burr M Castenholz RW Young M McDermott TR 2004 Thermobaculum terrenum gen. nov., sp. nov. a non-phototrophic Gram-positive thermophile representing an environmental clone group related to the Chloroflexi (green non-sulfur bacteria) and Thermomicrobia Arch Microbiol 181 269 277
10. (15)N-labeled lipoproteins and membrane proteins having one and two transmembrane segments in a Bacillus subtilis secA temperature-sensitive mutant using 2D-PAGE and MALDI-TOF MS J Proteome Res 4 826 836
11. Cabanes D Dehoux P Dussurget O Frangeul L Cossart P 2002 Surface proteins and the pathogenic potential of Listeria monocytogenes Trends Microbiol 10 238 245
12. Calabi E Ward S Wren B Paxton T Panico M Morris H Dell A Dougan G Fairweather N 2001 Molecular characterization of the surface layer proteins from Clostridium difficile Mol Microbiol 40 1187 1199
13. Calvo E Pucciarelli MG Bierne H Cossart P Albar JP Garcia-Del Portillo F 2005 Analysis of the Listeria cell wall proteome by two-dimensional nanoliquid chromatography coupled to mass spectrometry Proteomics 5 433 443
14. Carvalho AL Dias FMV Prates JAM Nagy T Gilbert HJ Davies GJ Ferreira LMA Romao MJ Fontes CMGA 2003 Cellulosome assembly revealed by the crystal structure of the cohesin-dockerin complex Proc Natl Acad Sci USA 100 13809 13814
15. Chami M Bayan N Peyret JL Gulik-Krzywicki T Leblon G Shechter E 1997 The S-layer protein of Corynebacterium glutamicum is anchored to the cell wall by its C-terminal hydrophobic domain Mol Microbiol 23 483 492
16. Chauvaux S Matuschek M Beguin P 1999 Distinct affinity of binding sites for S-layer homologous domains in Clostridium thermocellum and Bacillus anthracis cell envelopes J Bacteriol 181 2455 2458
17. Chhatwal GS 2002 Anchorless adhesins and invasins of Gram-positive bacteria a new class of virulence factors Trends Microbiol 10 205 208
18. Comfort D Clubb RT 2004 A comparative genome analysis indentifies disctinct sorting pathways in Gram-positive bacteria Infect Immun 72 2710 2722
19. Couture-Tosi E Delacroix H Mignot T Mesnage S Chami M Fouet A Mosser G 2002 Structural analysis and evidence for dynamic emergence of Bacillus anthracis S-layer networks J Bacteriol 184 6448 6456
20. Cullen PA Xu X Matsunaga J Sanchez Y Ko AI Haake DA Adler B 2005 Surfaceome of Leptospira spp Infect Immun 73 4853 4863
21. Dalbey RE Chen M 2004 Sec-translocase mediated membrane protein biogenesis Biochim Biophys Acta - Mol Cell Res 1694 37 53
22. Desvaux M 2005a The cellulosome of Clostridium cellulolyticum Enzymes Microbiol Technol 37 373 385
23. Desvaux M 2005b Clostridium cellulolyticum model organism of mesophilic cellulolytic clostridia FEMS Microbiol Rev 29 741 764
24. Desvaux M Khan A Scott-Tucker A Chaudhuri RR Pallen MJ Henderson IR 2005 Genomic analysis of the protein secretion systems in Clostridium acetobutylicum ATCC824 Biochim Biophys Acta - Mol Cell Res 1745 223 253
25. Desvaux M Parham NJ Henderson IR 2004a The autotransporter secretion system Res Microbiol 155 53 60
26. Desvaux M Parham NJ Henderson IR 2004b Type V protein secretion simplicity gone awry? Curr Issues Mol Biol 6 111 124
27. Doi RH Tamaru Y 2001 The Clostridium cellulovorans cellulosome an enzyme complex with plant cell wall degrading activity Chem Rec 1 24 32
28. Dramsi S Trieu-Cuot P Bierne H 2005 Sorting sortases a nomenclature proposal for the various sortases of Gram-positive bacteria Res Microbiol 156 289 297
29. Dubnau D 1999 DNA uptake in bacteria Annu Rev Microbiol 53 217 244
30. Dussurget O Pizarro-Cerda J Cossart P 2004 Molecular determinants of Listeria monocytogenes virulence Annu Rev Microbiol 58 587 610
31. Engelhardt H Peters J 1998 Structural research on surface layers a focus on stability, surface layer homology domains, and surface layer-cell wall interactions J Struct Biol 124 276 302
32. Fernandez-Tornero C Lopez R Garcia E Gimenez-Gallego G Romero A 2001 A novel solenoid fold in the cell wall anchoring domain of the pneumococcal virulence factor LytA Nat Struct Biol 8 1020 1024
33. Fischer W 1994 Lipoteichoic acid and lipids in the membrane of Staphylococcus aureus Med Microbiol Immunol 183 61 76
34. Foster SJ 1991 Cloning, expression, sequence analysis and biochemical characterization of an autolytic amidase of Bacillus subtilis 168 trpC2 J Gen Microbiol 137 1987 1998
35. Froderberg L Houben E Samuelson JC Chen M Park SK Phillips GJ Dalbey R Luirink J De Gier JW 2003 Versatility of inner membrane protein biogenesis in Escherichia coli Mol Microbiol 47 1015 1027
36. Garrity GM 2001 Bergey's Manual of Systematic Bacteriology 2nd edn Springer Berlin Heidelberg
37. Gram HCJ 1884 Über die isolirte Färbung der Schizomyceten in Schnitt- und Trockenpräparaten Fortschritte der Medizin 2 185 189
38. Guiral S Mitchell TJ Martin B Claverys JP 2005 Competence-programmed predation of noncompetent cells in the human pathogen Streptococcus pneumoniae genetic requirements Proc Natl Acad Sci USA 102 8710 8715
39. Gupta RS 1998 Protein phylogenies and signature sequences a reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotes Microbiol Mol Biol Rev 62 1435 1491
40. Hall TA 1999 BioEdit a user-friendly biological sequence alignement editor and analysis program for Windows 95/98/NT Nucleic Acids Symp Ser 41 95 98
41. Heilmann C Hartleib J Hussain MS Peters G 2005 The multifunctional Staphylococcus aureus autolysin aaa mediates adherence to immobilized fibrinogen and fibronectin Infect Immun 73 4793 4802
42. Hell W Meyer HG Gatermann SG 1998 Cloning of aas, a gene encoding a Staphylococcus saprophyticus surface protein with adhesive and autolytic properties Mol Microbiol 29 871 881
43. Henderson IR Navarro-Garcia F Desvaux M Fernandez RC Ala'Aldeen D 2004 Type V protein secretion pathway the autotransporter story Microbiol Mol Biol Rev 68 692 744
44. Higgins D Thompson J Gibson T Thompson JD Higgins DG Gibson TJ 1994 CLUSTAL W improving the sensitivity of progressive multiple sequence alignment through sequence weighting,position-specific gap penalties and weight matrix choice Nucleic Acids Res 22 4673 4680
45. Huber C Ilk N Runzler D Egelseer EM Weigert S Sleytr UB Sara M 2005 The three S-layer-like homology motifs of the S-layer protein SbpA of Bacillus sphaericus CCM 2177 are not sufficient for binding to the pyruvylated secondary cell wall polymer Mol Microbiol 55 197 205
46. Jonquieres R Bierne H Fiedler F Gounon P Cossart P 1999 Interaction between the protein InlB of Listeria monocytogenes and lipoteichoic acid a novel mechanism of protein association at the surface of Gram-positive bacteria Mol Microbiol 34 902 914
47. Jonson AB Normark S Rhen M 2005 Fimbriae, pili, flagella and bacterial virulence Contrib Microbiol 12 67 89
48. Joris B Englebert S Chu CP Kariyama R Daneo-Moore L Shockman GD Ghuysen JM 1992 Modular design of the Enterococcus hirae muramidase-2 and Streptococcus faecalis autolysin FEMS Microbiol Lett 91 257 264
49. Kanehisa M Goto S Kawashima S Okuno Y Hattori M 2004 The KEGG resource for deciphering the genome Nucleic Acids Res 32 D277 280
50. Koebnik R 2001 The role of bacterial pili in protein and DNA translocation Trends Microbiol 9 586 590
51. Kosugi A Murashima K Tamaru Y Doi RH 2002 Cell-surface-anchoring role of N-terminal surface layer homology domains of Clostridium cellulovorans EngE J Bacteriol 184 884 888
52. Kremer BH Bijlsma JJ Kusters JG de Graaff J van Steenbergen TJ 1999 Cloning of fibA, encoding an immunogenic subunit of the fibril-like surface structure of Peptostreptococcus micros J Bacteriol 181 2485 2491
53. Kuroda A Sekiguchi J 1991 Molecular cloning and sequencing of a major Bacillus subtilis autolysin gene J Bacteriol 173 7304 7312
54. Lauer P Rinaudo CD Soriani M et al 2005 Genome analysis reveals pili in Group B Streptococcus Science 309 105
55. Lee SY Choi JH Xu Z 2003 Microbial cell-surface display Trends Biotechnol 21 45 52
56. Luirink J Von Heijne G Houben E De Gier JW 2005 Biogenesis of inner membrane proteins in Escherichia coli Annu Rev Microbiol 59 329 355
57. Lupas A Engelhardt H Peters J Santarius U Volker S Baumeister W 1994 Domain structure of the Acetogenium kivui surface layer revealed by electron crystallography and sequence analysis J Bacteriol 176 1224 1233
58. Macnab RM 2004 Type III flagellar protein export and flagellar assembly Biochim Biophys Acta - Mol Cell Res 1694 207 217
59. Marino M Banerjee M Jonquieres R Cossart P Ghosh P 2002 GW domains of the Listeria monocytogenes invasion protein InlB are SH3-like and mediate binding to host ligands EMBO J 21 5623 5634
60. Mira A Pushker R Legault BA Moreira D Rodriguez-Valera F 2004 Evolutionary relationships of Fusobacterium nucleatum based on phylogenetic analysis and comparative genomics BMC Evol Biol 4 50
61. Navarre WW Schneewind O 1999 Surface proteins of Gram-positive bacteria and mechanisms of their targeting to the cell wall envelope Microbiol Mol Biol Rev 63 174 229
62. Nguyen L Paulsen IT Tchieu J Hueck CJ Saier MH Jr. 2000 Phylogenetic analyses of the constituents of Type III protein secretion systems J Mol Microbiol Biotechnol 2 125 144
63. Nölling J Breton G Omelchenko MV et al 2001 Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum J Bacteriol 183 4823 4838
64. Pallen MJ Lam AC Antonio M Dunbar K 2001 An embarrassment of sortase - a richness of substrates? Trends Microbiol 9 97 101
65. Peabody CR Chung YJ Yen MR Vidal-Ingigliardi D Pugsley AP Saier MH Jr. 2003 Type II protein secretion and its relationship to bacterial Type 4 pili and archaeal flagella Microbiology 149 3051 3072
66. Planet PJ Kachlany SC Fine DH DeSalle R Figurski DH 2003 The widespread colonization island of Actinobacillus actinomycetemcomitans Nat Genet 34 193 198
67. Pucciarelli MG Calvo E Sabet C Bierne H Cossart P Garcia-Del Portillo F 2005 Identification of substrates of the Listeria monocytogenes sortases A and B by a non-gel proteomic analysis Proteomics 5 4808 4817
68. Rakotoarivonina H Jubelin G Hebraud M Gaillard-Martinie B Forano E Mosoni P 2002 Adhesion to cellulose of the Gram-positive bacterium Ruminococcus albus involves Type 4 pili Microbiology 148 1871 1880
69. Rakotoarivonina H Larson MA Morrison M Girardeau JP Gaillard-Martinie B Forano E Mosoni P 2005 The Ruminococcus albus pilA1-pilA2 locus expression and putative role of two adjacent pil genes in pilus formation and bacterial adhesion to cellulose Microbiology 151 1291 1299
70. Sankaran K Wu HC 1994 Lipid modification of bacterial prolipoprotein. Transfer of diacylglyceryl moiety from phosphatidylglycerol J Biol Chem 269 19701 19706
71. Schneider TD Stephens RM 1990 Sequence logos a new way to display consensus sequences Nucleic Acids Res 18 6097 6100
72. Schuster-Bockler B Schultz J Rahmann S 2004 HMM Logos for visualization of protein families BMC Bioinform 5 7
73. Schäffer C Kahlig H Christian R Schulz G Zayni S Messner P 1999 The diacetamidodideoxyuronic-acid-containing glycan chain of Bacillus stearothermophilus NRS 2004/3a represents the secondary cell-wall polymer of wild-type B. stearothermophilus strains Microbiology 145 1575 1583
74. Shatalkin AI 2004 Highest level of division in classification of organisms. 3. Monodermata and Didermata Zh Obshch Biol 65 195 210
75. Shockman GD Barrett JF 1983 Structure, function, and assembly of cell walls of Gram-positive bacteria Annu Rev Microbiol 37 501 527
76. Smit E Pouwels PH 2002 One repeat of the cell wall binding domain is sufficient for anchoring the Lactobacillus acidophilus surface layer protein J Bacteriol 184 4617 4619
77. Snel B Huynen MA Dutilh BE 2005 Genome trees and the nature of genome evolution Annu Rev Microbiol 59 191 209
78. Steen A Buist G Leenhouts KJ El Khattabi M Grijpstra F Zomer AL Venema G Kuipers OP Kok J 2003 Cell wall attachment of a widely distributed peptidoglycan binding domain is hindered by cell wall constituents J Biol Chem 278 23874 23881
79. Steindl C Schaffer C Wugeditsch T Graninger M Matecko I Muller N Messner P 2002 The first biantennary bacterial secondary cell wall polymer and its influence on S-layer glycoprotein assembly Biochem J 368 483 494
80. Sutcliffe IC Russell RR 1995 Lipoproteins of Gram-positive bacteria J Bacteriol 177 1123 1128
81. Sára M 2001 Conserved anchoring mechanisms between crystalline cell surface S-layer proteins and secondary cell wall polymers in Gram-positive bacteria? Trends Microbiol 9 47 49
82. Sára M Sleytr UB 2000 S-Layer proteins J Bacteriol 182 859 868
83. Taylor CM Roberts IS 2005 Capsular polysaccharides and their role in virulence Contrib Microbiol 12 55 66
84. Tjalsma H Antelmann H Jongbloed JD et al 2004 Proteomics of protein secretion by Bacillus subtilis separating the "secrets" of the secretome Microbiol Mol Biol Rev 68 207 233
85. Tjalsma H van Dijl JM 2005 Proteomics-based consensus prediction of protein retention in a bacterial membrane Proteomics 5 4472 4482
86. Tjalsma H Kontinen VP Pragai Z Wu H Meima R Venema G Bron S Sarvas M van Dijl JM 1999 The role of lipoprotein processing by signal peptidase II in the Gram-positive eubacterium Bacillus subtilis. Signal peptidase II is required for the efficient secretion of alpha-amylase, a non-lipoprotein J Biol Chem 274 1698 1707
87. Tjalsma H Bolhuis A Jongbloed JD Bron S van Dijl JM 2000 Signal peptide-dependent protein transport in Bacillus subtilis a genome-based survey of the secretome Microbiol Mol Biol Rev 64 515 547
88. Tjalsma H Bron S van Dijl JM 2003 Complementary impact of paralogous Oxa1-like proteins of Bacillus subtilis on post-translocational stages in protein secretion J Biol Chem 278 15622 15632
89. Ton-That H Marraffini LA Schneewind O 2004 Protein sorting to the cell wall envelope of Gram-positive bacteria Biochim Biophys Acta - Mol Cell Res 1694 269 278
90. Ton-That H Schneewind O 2004 Assembly of pili in Gram-positive bacteria Trends Microbiol 12 228 234
91. Van der Laan M Nouwen NP Driessen AJ 2005 YidC - an evolutionary conserved device for the assembly of energy-transducing membrane protein complexes Curr Opin Microbiol 8 182 187
92. Venema R Tjalsma H van Dijl JM de Jong A Leenhouts K Buist G Venema G 2003 Active lipoprotein precursors in the Gram-positive eubacterium Lactococcus lactis J Biol Chem 278 14739 14746
93. Waligora AJ Hennequin C Mullany P Bourlioux P Collignon A Karjalainen T 2001 Characterization of a cell surface protein of Clostridium difficile with adhesive properties Infect Immun 69 2144 2153
94. Woese CR 1987 Bacterial evolution Microbiol Rev 51 221 271
95. Xu Q Bayer EA Goldman M Kenig R Shoham Y Lamed R 2004 Architecture of the Bacteroides cellulosolvens cellulosome description of a cell surface-anchoring scaffoldin and a family 48 cellulase J Bacteriol 186 968 977
96. Yang HS Hoober JK 1998 Molecular cloning of a light-inducible gene (lipA) encoding a novel pilin from Arthrobacter photogonimos FEMS Microbiol Lett 163 85 89