HMM logos for visualization of protein families

BMC Bioinformatics

Volumn 5, Issue , 2004, Pages

  Schuster Böckler, Benjamin ^a,b   Schultz, Jörg ^c   Rahmann, Sven ^a,d  

^a FREIE UNIVERSITÄT BERLIN   (Germany)

^b Universität Würzburg ^*  (Germany)

^c UNIVERSITY OF WÜRZBURG   (Germany)

^d MAX PLANCK INSTITUTE FOR MOLECULAR GENETICS   (Germany)

Author keywords

Dynamic programming; Hidden Markov Model; Hitting probability; HMM logo; Information content; Profile; Sequence logo; Small GTPases

Indexed keywords

DYNAMIC PROGRAMMING; MOLECULAR BIOLOGY; PROTEINS; TRELLIS CODES; VISUALIZATION;

GTPASES; HITTING PROBABILITIES; HMM LOGO; INFORMATION CONTENTS; PROFILE; SEQUENCE LOGOS;

HIDDEN MARKOV MODELS;

ACCESS TO INFORMATION; ARTICLE; CODING; COMPUTER INTERFACE; COMPUTER PROGRAM; FREQUENCY ANALYSIS; GENE SEQUENCE; INTERNET; NONBIOLOGICAL MODEL; ONLINE SYSTEM; PROBABILITY; PROTEIN FAMILY; STATISTICAL MODEL; BIOLOGY; CHEMISTRY; COMPARATIVE STUDY; COMPUTER GRAPHICS; PROCEDURES; PROTEIN DATABASE; PROTEIN MOTIF; SEQUENCE ALIGNMENT; STATISTICS AND NUMERICAL DATA;

MONOMERIC GUANINE NUCLEOTIDE BINDING PROTEIN;

AMINO ACID MOTIFS; COMPUTATIONAL BIOLOGY; COMPUTER GRAPHICS; DATABASES, PROTEIN; MARKOV CHAINS; MONOMERIC GTP-BINDING PROTEINS; SEQUENCE ALIGNMENT;

EID: 2442525077     PISSN: 14712105     EISSN: None     Source Type: Journal    
DOI: 10.1186/1471-2105-5-7     Document Type: Article

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