Dispersal, vicariance, and timing of diversification in Nothonotus darters

Molecular Ecology

Volumn 14, Issue 11, 2005, Pages 3485-3496

  Near, Thomas J ^a   Keck, Benjamin P ^a  

^a UNIVERSITY OF TENNESSEE   (United States)

Author keywords

Biogeography; Centrarchidae; Divergence times; Molecular clocks

Indexed keywords

ANHINGIDAE; CENTRARCHIDAE; NOTHONOTUS; PISCES;

CYTOCHROME B;

ANIMAL; ARTICLE; BAYES THEOREM; BIOLOGICAL MODEL; COMPARATIVE STUDY; DEMOGRAPHY; DNA SEQUENCE; GENETICS; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PERCIFORMES; PHYLOGENY; POPULATION DYNAMICS; SPECIES DIFFERENCE; THEORETICAL MODEL; TIME; UNITED STATES;

ANIMALS; BASE SEQUENCE; BAYES THEOREM; CYTOCHROMES B; DEMOGRAPHY; EVOLUTION, MOLECULAR; MODELS, GENETIC; MODELS, THEORETICAL; MOLECULAR SEQUENCE DATA; PERCIFORMES; PHYLOGENY; POPULATION DYNAMICS; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; TIME FACTORS; UNITED STATES;

EID: 33644875414     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2005.02671.x     Document Type: Article

References (58)

1. Bailey RM Winn HW Smith CL ( 1954) Fishes from the Escambia River, Alabama and Florida, with ecological and taxonomic notes. Proceedings of the Academy of Natural Science Philadelphia, 106, 109 164.
2. Baldwin BG Sanderson MJ ( 1998) Age and rate of diversification of the Hawaiian silversword alliance (Compostiae). Proceedings of the National Academy of Sciences, USA, 95, 9402 9406.
3. Berendzen PB Simons AM Wood RM ( 2003) Phylogeography of the northern hogsucker, Hypentelium nigricans (Teleostei: Cypriniformes): genetic evidence for the existence of the ancient Teays River. Journal of Biogeography, 30, 1139 1152.
4. Berggren WA Kent DV C.C. Swisher I Aubry M-P ( 1995) A revised Cenozoic geochronology and chronostratigraphy. In: Geochronology, Time Scales and Global Stratigraphic Correlation (eds Berggren WA Kent DV Aubry M-P Hardenbol J), pp. 129 212. Society for Economic Paleontology and Mineralogy, Tulsa, Oklahoma.
5. Briggs JC ( 1986) Introduction to the zoogeography of North American fishes. In: The Zoogeography of North American Freshwater Fishes (eds Hocutt CH Wiley EO), pp. 1 16. John Wiley & Sons, New York.
6. Cavender TM ( 1986) Review of the fossil history of North American freshwater fishes. In: The Zoogeography of North American Freshwater Fishes (eds Hocutt CH Wiley EO), pp. 699 724. John Wiley & Sons, New York.
7. Clabaugh JP Knott KE Wood RM Mayden RL ( 1996) Systematics and biogeography of snubnose darters, genus Etheostoma (Teleostei: Percidae) from the Black Warrior River system, Alabama. Biochemical Systematics and Ecology, 24, 119 134.
8. Crandall KA Templeton AR ( 1999) The zoogeography and centers of origin of the crayfish subgenus Procericambarus (Decapoda: Cambaridae). Evolution, 53, 123 134.
9. Cunningham CW Collins TM ( 1994) Developing model systems for molecular biogeography: vicariance and interchange in marine invertebrates. In: Molecular Ecology and Evolution: Approaches and Applications (eds Schierwater B Streit B Wagner GP DeSalle R), pp. 405 433. Birkhauser-Verlag, Basel, Switzerland.
10. Donoghue MJ Moore BR ( 2003) Toward an integrative historical biogeography. Integrative and Comparative Biology, 43, 261 270.
11. Doyle JA Donoghue MJ ( 1993) Phylogenies and angiosperm diversification. Paleobiology, 19, 141 167.
12. Etnier DA Starnes WC ( 1993) The Fishes of Tennessee. University of Tennessee Press, Knoxville, Tennessee.
13. Etnier DA Williams JD ( 1989) Etheostoma (Nothonotus) wapiti (Osteichthyes: Percidae), a new darter from the southern bend of the Tennessee River system in Alabama and Tennessee. Proceedings of the Biological Society of Washington, 102, 987 1000.
14. Felsenstein J ( 1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. Journal of Molecular Evolution, 17, 368 376.
15. Goldman N Anderson JP Rodrigo AG ( 2000) Likelihood-based tests of topologies in phylogenetics. Systematic Biology, 49, 652 670.
16. Hubbell SP ( 2001) The Unified Neutral Theory of Biodiversity and Biogeography. Princeton University Press, Princeton, New Jersey.
17. Huelsenbeck JP Ronquist F Nielsen R Bollback JP ( 2001) Bayesian inference of phylogeny and its impact on evolutionary biology. Science, 294, 2310 2314.
18. Kinziger AP Wood RM Welsh SA ( 2001) Systematics of Etheostoma tippecanoe and Etheostoma denoncourti (Perciformes: Percidae). Copeia, 2001, 235 239.
19. Kuehne RA Barbour RW ( 1983) The American Darters. University Press of Kentucky, Lexington, Kentucky.
20. Larget B Simon DL ( 1999) Markov chain Monte Carlo algorithms for the Bayesian analysis of phylogenetic trees. Molecular Biology and Evolution, 16, 750 759.
21. Lee DS Gilbert CR Hocutt CH et al. ( 1980) Atlas of North American Freshwater Fishes. North Carolina State Museum of Natural History, Raleigh, North Carolina.
22. Losos JB Schluter D ( 2000) Analysis of an evolutionary species-area relationship. Nature, 408, 847 850.
23. Lundberg JG Kottelat M Smith GR Stiassny MLJ Gill AC ( 2000) So many fishes, so little time: an overview of recent ichthyological discovery in continental waters. Annals of the Missouri Botanical Garden, 87, 26 62.
24. MacArthur RH Wilson EO ( 1967) The Theory of Island Biogeography. Princeton University Press, Princeton, New Jersey.
25. Magallon S Sanderson MJ ( 2001) Absolute diversification rates in angiosperm clades. Evolution, 55, 1762 1780.
26. Mayden RL ( 1987) Pleistocene glaciation and historical biogeography of North American central-highland fishes. In: Quaternary Environments of Kansas (ed. Johnson WC), pp. 141 152. Kansas Geological Survey, Lawrence, Kansas.
27. Mayden RL ( 1988) Vicariance biogeography, parsimony, and evolution in North American freshwater fishes. Systematic Zoology, 37, 329 355.
28. Mettee MF O'Neil PE Pierson JM ( 1996) Fishes of Alabama and the Mobile Basin. Oxmoor House, Birmingham, Alabama.
29. Mills HH Kaye JM ( 2001) Drainage history of the Tennessee River: Review and new metamorphic quartz locations. Southeastern Geology, 40, 75 97.
30. Near TJ ( 2002) Phylogenetic relationships of Percina (Percidae: Etheostomatinae). Copeia, 2002, 1 14.
31. Near TJ Benard MF ( 2004) Rapid allopatric speciation in logperch darters (Percidae: Percina). Evolution, 58, 2798 2808.
32. Near TJ Porterfield JC Page LM ( 2000) Evolution of cytochrome b and the molecular systematics of Ammocrypta (Percidae: Etheostomatinae). Copeia, 2000, 701 711.
33. Near TJ Page LM Mayden RL ( 2001) Intraspecific phylogeography of Percina evides (Percidae: Etheostomatinae): an additional test of the Central Highlands pre-Pleistocene vicariance hypothesis. Molecular Ecology, 10, 2235 2240.
34. Near TJ Kassler TW Koppelman JB Dillman CB Philipp DP ( 2003) Speciation in North American black basses, Micropterus (Actinopterygii: Centrarchidae). Evolution, 57, 1610 1621.
35. Near TJ Bolnick DI Wainwright PC ( 2004) Investigating phylogenetic relationships of sunfishes and black basses (Actinopterygii: Centrarchidae) using DNA sequences from mitochondrial and nuclear genes. Molecular Phylogenetics and Evolution, 32, 344 357.
36. Page LM ( 1983) Handbook of Darters. T.F.H. Publications, Neptune City, New Jersey.
37. Pflieger WL ( 1971) A distributional study of Missouri fishes. University of Kansas Publications Museum of Natural History, 20, 225 570.
38. Posada D Crandall KA ( 1998) modeltest: testing the model of DNA substitution. Bioinformatics, 14, 817 818.
39. Ronquist F ( 1996) diva, version 1.1. Computer program and manual available by anonymous FTP from Uppsala University ( ftp.sysbot.uu.se).
40. Ronquist F ( 1997) Dispersal-vicariance analysis: a new approach to the quantification of historical biogeography. Systematic Biology, 46, 195 203.
41. Ronquist F Huelsenbeck JP ( 2003) mrbayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572 1574.
42. Ronquist F Nylin S ( 1990) Process and pattern in the evolution of species associations. Systematic Zoology, 39, 323 344.
43. Rosen DE ( 1978) Vicariant patterns and historical explanation in biogeography. Systematic Zoology, 27, 159 188.
44. Rosenzweig ML ( 1995) Species Diversity in Space and Time. Cambridge University Press, Cambridge, UK.
45. Sanderson MJ ( 2002) Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach. Molecular Biology and Evolution, 19, 101 109.
46. Sanderson MJ ( 2003) r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock. Bioinformatics, 19, 301 302.
47. Shimodaira H Hasegawa M ( 1999) Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Molecular Biology and Evolution, 16, 1114 1116.
48. Simons AM ( 2004) Phylogenetic relationships in the genus Erimystax (Actinopterygii: Cyprinidae) based on the cytochrome b gene. Copeia, 2004, 351 356.
49. Skelton CE Etnier DA ( 2000) Taxonomic status of Etheostoma denoncourti Stauffer and van Snik. Copeia, 2000, 1097 1103.
50. Sloss BL Billington N Burr BM ( 2004) A molecular phylogeny of the Percidae (Teleostei, Perciformes) based on mitochondrial DNA sequence. Molecular Phylogenetics and Evolution, 32, 545 562.
51. Smith GR ( 1981) Late Cenozoic freshwater fishes of North America. Annual Review of Ecology and Systematics, 12, 163 193.
52. Song CB Near TJ Page LM ( 1998) Phylogenetic relations among percid fishes as inferred from mitochondrial cytochrome b DNA sequence data. Molecular Phylogenetics and Evolution, 10, 343 353.
53. Starnes WC Etnier DA ( 1986) Drainage evolution and fish biogeography of the Tennessee and Cumberland Rivers drainage realm. In: The Zoogeography of North American Freshwater Fishes (eds Hocutt CH Wiley EO), pp. 325 361. John Wiley & Sons, New York.
54. Strange RM Burr BM ( 1997) Intraspecific phylogeography of North American highland fishes: a test of the Pleistocene vicariance hypothesis. Evolution, 51, 885 897.
55. Swofford DL Olsen GJ Waddell PJ Hillis DM ( 1996) Phylogenetic inference. In: Molecular Systematics (eds Hillis DM Moritz C Mable BK), pp. 407 514. Sinauer Associates, Sunderland, Massachusetts.
56. Thornbury WD ( 1965) Regional Geomorphology of the United States. Wiley, New York.
57. Wiley EO Mayden RL ( 1985) Species and speciation in phylogenetic systematics, with examples from the North American fish fauna. Annals of the Missouri Botanical Garden, 72, 596 635.
58. Wood RM ( 1996) Phylogenetic systematics of the darter subgenus Nothonotus (Teleostei: Percidae). Copeia, 1996, 300 318.