Environmental tuning of mutation rates

Environmental Microbiology

Volumn 8, Issue 2, 2006, Pages 193-199

  Saint Ruf, Claude ^a   Matic, Ivan ^a  

^a INSERM   (France)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

BACTERIAL PROTEIN; DNA DIRECTED DNA POLYMERASE BETA; SIGMA FACTOR; SIGMA FACTOR KATF PROTEIN, BACTERIA;

ESCHERICHIA COLI; GENETICS; METABOLISM; MUTATION; OXIDATIVE STRESS; REGULON; REVIEW;

BACTERIAL PROTEINS; DNA POLYMERASE BETA; ESCHERICHIA COLI; MUTATION; OXIDATIVE STRESS; REGULON; SIGMA FACTOR;

EID: 33644857994     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2005.00968.x     Document Type: Short Survey

References (45)

1. Abdulkarim F. Hughes D. 1996 Homologous recombination between the tuf genes of Salmonella typhimurium J Mol Biol 260 506 522
2. Arjan JA. Visser M. Zeyl CW. Gerrish PJ. Blanchard JL. Lenski RE. 1999 Diminishing returns from mutation supply rate in asexual populations Science 283 404 406
3. Avery SM. Buncic S. 2003 Escherichia coli O157 diversity with respect to survival during drying on concrete J Food Prot 66 780 786
4. Benito A. Ventoura G. Casadei M. Robinson T. Mackey B. 1999 Variation in resistance of natural isolates of Escherichia coli O157 to high hydrostatic pressure, mild heat, and other stresses Appl Environ Microbiol 65 1564 1569
5. Bijlsma R. Loeschcke V. (eds) 1997 Environmental Stress, Adaptation, and Evolution Basel Birkhäuser-Verlag.
6. Bjedov I. Tenaillon O. Gérard B. Souza V. Denamur E. Radman M. et al. 2003 Stress-induced mutagenesis in bacteria Science 300 1404 1409
7. Brégeon D. Matic I. Radman M. Taddei F. 1999 Inefficient mismatch repair: genetic defects and down regulation J Genet 78 21 28
8. Courcelle J. Khodursky A. Peter B. Brown PO. Hanawalt PC. 2001 Comparative gene expression profiles following UV exposure in wild-type and SOS-deficient Escherichia coli Genetics 158 41 64
9. Delmas S. Matic I. 2005 Cellular response to horizontally transferred DNA in Escherichia coli is tuned by DNA repair systems DNA Repair 4 221 229
10. Denamur E. Lecointre G. Darlu P. Tenaillon O. Acquaviva C. Sayada C. et al. 2000 Evolutionary implications of the frequent horizontal transfer of mismatch repair genes Cell 103 711 721
11. Feng G. Tsui HC. Winkler ME. 1996 Depletion of the cellular amounts of the MutS and MutH methyl-directed mismatch repair proteins in stationary-phase Escherichia coli K-12 cells J Bacteriol 178 2388 2396
12. Fernandez-De-Henestrosa AR. Ogi T. Aoyagi S. Chafin D. Hayes JJ. Ohmori H. Woodgate R. 2000 Identification of additional genes belonging to the LexA regulon in Escherichia coli Mol Microbiol 35 1560 1572
13. Frenkiel-Krispin D. Ben-Avraham I. Englander J. Shimoni E. Wolf SG. Minsky A. 2004 Nucleoid restructuring in stationary-state bacteria Mol Microbiol 51 395 405
14. Goodman MF. 2002 Error-prone repair DNA polymerases in prokaryotes and eukaryotes Annu Rev Biochem 71 17 50
15. Hengge-Aronis R. 2000 The general stress response in Escherichia coli. In Bacterial Stress Responses Storz G. Hengge-Aronis R. (eds) Washington, DC American Society for Microbiology Press, pp. 161 178
16. Hengge-Aronis R. 2002 Signal transduction and regulatory mechanisms involved in control of the sigma (S) (RpoS) subunit of RNA polymerase Microbiol Mol Biol Rev 66 373 395
17. Huisman GW. Siegele DA. Zambrano MM. Kolter R. 1996 Morphological and physiological changes during stationary phase. In Escherichia coli and Salmonella: Cellular and Molecular Biology Vol. 2 Neidhart FC. Curtis R. Ingraham JL. Lin ECC. Low KB. Magasanik B. et al. Washington, DC American Society for Microbiology Press 1672 1682
18. Kim S-R. Maenhaut-Michel G. Yamada M. Yamamoto Y. Matsui K. Sofuni T. et al. 1997 Multiple pathways for SOS-induced mutagenesis in Escherichia coli: an overexpression of dinB/dinP results in strongly enhancing mutagenesis in the absence of any exogenous treatment to damage DNA Proc Natl Acad Sci USA 94 13792 13797
19. King T. Ishihama A. Kori A. Ferenci T. 2004 A regulatory trade-off as a source of strain variation in the species Escherichia coli J Bacteriol 186 5614 5620
20. Lacour S. Landini P. 2004 SigmaS-dependent gene expression at the onset of stationary phase in Escherichia coli: function of sigmaS-dependent genes and identification of their promoter sequences J Bacteriol 186 7186 9715
21. Layton JC. Foster PL. 2003 Error-prone DNA polymerase IV is controlled by the stress-response sigma factor, RpoS. Escherichia coli Mol Microbiol 50 549 561
22. Li B. Tsui HC. LeClerc JE. Dey M. Winkler ME. Cebula TA. 2003 Molecular analysis of mutS expression and mutation in natural isolates of pathogenic Escherichia coli Microbiology 149 1323 3131
23. Liu GR. Edwards K. Eisenstark A. Fu YM. Liu WQ. Sanderson KE. et al. 2003 Genomic diversification among archival strains of Salmonella enterica serovar typhimurium LT7 J Bacteriol 185 2131 2142
24. Loewen PC. Hu B. Strutinsky J. Sparling R. 1998 Regulation in the rpoS regulon of Escherichia coli Can J Microbiol 44 707 717
25. Lombardo MJ. Aponyi I. Rosenberg SM. 2004 General stress response regulator RpoS in adaptive mutation and amplification in Escherichia coli Genetics 166 669 680
26. McKenzie GJ. Lee PL. Lombardo MJ. Hastings PJ. Rosenberg SM. 2001 SOS mutator DNA polymerase IV functions in adaptive mutation and not adaptive amplification Mol Cell 7 571 579
27. Martinez A. Kolter R. 1997 Protection of DNA during oxidative stress by the nonspecific DNA-binding protein Dps J Bacteriol 179 5188 5194
28. Nair S. Finkel SE. 2004 Dps protects cells against multiple stresses during stationary phase J Bacteriol 186 4192 4198
29. Notley-McRobb L. King T. Ferenci T. 2002 rpoS mutations and loss of general stress resistance in Escherichia coli populations as a consequence of conflict between competing stress responses J Bacteriol 184 806 811
30. Nystrom T. 2004 Growth versus maintenance: a trade-off dictated by RNA polymerase availability and sigma factor competition? Mol Microbiol 54 855 862
31. Patten CL. Kirchhof MG. Schertzberg MR. Morton RA. Schellhorn HE. 2004 Microarray analysis of RpoS-mediated gene expression in Escherichia coli K-12 Mol Genet Genomics 272 580 591
32. Petit MA. Dimpfl J. Radman M. Echols H. 1991 Control of chromosomal rearrangements in E. coli by the mismatch repair system Genetics 129 327 332
33. Prieto AI. Ramos-Morales F. Casadesus J. 2004 Bile-induced DNA damage in Salmonella enterica Genetics 168 1787 1794
34. Robey M. Benito A. Hutson RH. Pascual C. Park SF. Mackey BM. 2001 Variation in resistance to high hydrostatic pressure and rpoS heterogeneity in natural isolates of Escherichia coli O157:H7 Appl Environ Microbiol 67 4901 4907
35. Saint-Ruf C. Taddei F. Matic I. 2004 Stress and survival of aging Escherichia coli rpoS colonies Genetics 168 541 546
36. Schofield MJ. Hsieh P. 2003 DNA mismatch repair: molecular mechanisms and biological function Annu Rev Microbiol 57 579 608
37. Tenaillon O. Taddei F. Radman M. Matic I. 2001 Second order selection in bacterial evolution: selection acting on mutation and recombination rates in the course of adaptation Res Microbiol 152 11 16
38. Tenaillon O. Denamur E. Matic I. 2004 Evolutionary significance of stress-induced mutagenesis in bacteria Trends Microbiol 12 264 270
39. Tsui H-CT. Feng G. Winkler ME. 1997 Negative regulation of mutS and mutH repair gene expression by the Hfq and RpoS global regulators of Escherichia coli K-12 J Bacteriol 179 7476 7487
40. Walker GC. Smith BT. Sutton MD. 2000 The SOS response to DNA damage. In Bacterial Stress Responses Storz G. Hengge-Aronis R. (eds) Washington, DC American Society for Microbiology Press, pp. 131 144
41. Waterman SR. Small PL. 1996 Characterization of the acid resistance phenotype and rpoS alleles of shiga-like toxin-producing Escherichia coli Infect Immun 64 2808 2811
42. Weber H. Polen T. Heuveling J. Wendisch VF. Hengge R. 2005 Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity J Bacteriol 187 1591 1603
43. Wyrzykowski J. Volkert MR. 2003 The Escherichia coli methyl-directed mismatch repair system repairs base pairs containing oxidative lesions J Bacteriol 185 1701 1704
44. Yang H. Wolff E. Kim M. Diep A. Miller JH. 2004 Identification of mutator genes and mutational pathways in Escherichia coli using a multicopy cloning approach Mol Microbiol 53 283 295
45. Zhao J. Winkler ME. 2000 Reduction of GC→TA transversion mutation by overexpression of MutS in Escherichia coli K-12 J Bacteriol 182 5025 5028