-
1
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. the Gene Ontology Consortium
-
M. Ashburner, C.A. Ball, J.A. Blake, D. Botstein, H. Butler, J.M. Cherry, A.P. Davis, K. Dolinski, S.S. Dwight, and J.T. Eppig Gene ontology: tool for the unification of biology. The Gene Ontology Consortium Nat. Genet. 25 2000 25 29
-
(2000)
Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
-
2
-
-
0035658442
-
HRD4/NPL4 is required for the proteasomal processing of ubiquitinated ER proteins
-
N.W. Bays, S.K. Wilhovsky, A. Goradia, K. Hodgkiss-Harlow, and R.Y. Hampton HRD4/NPL4 is required for the proteasomal processing of ubiquitinated ER proteins Mol. Biol. Cell 12 2001 4114 4128
-
(2001)
Mol. Biol. Cell
, vol.12
, pp. 4114-4128
-
-
Bays, N.W.1
Wilhovsky, S.K.2
Goradia, A.3
Hodgkiss-Harlow, K.4
Hampton, R.Y.5
-
3
-
-
0347513219
-
Characterizing gene sets with FuncAssociate
-
G.F. Berriz, O.D. King, B. Bryant, C. Sander, and F.P. Roth Characterizing gene sets with FuncAssociate Bioinformatics 19 2003 2502 2504
-
(2003)
Bioinformatics
, vol.19
, pp. 2502-2504
-
-
Berriz, G.F.1
King, O.D.2
Bryant, B.3
Sander, C.4
Roth, F.P.5
-
4
-
-
0034628848
-
Cell cycle. Piecing together the p53 puzzle
-
A.M. Carr Cell cycle. Piecing together the p53 puzzle Science 287 2000 1765 1766
-
(2000)
Science
, vol.287
, pp. 1765-1766
-
-
Carr, A.M.1
-
5
-
-
2342501365
-
Genome-wide localization of the nuclear transport machinery couples transcriptional status and nuclear organization
-
J.M. Casolari, C.R. Brown, S. Komili, J. West, H. Hieronymus, and P.A. Silver Genome-wide localization of the nuclear transport machinery couples transcriptional status and nuclear organization Cell 117 2004 427 439
-
(2004)
Cell
, vol.117
, pp. 427-439
-
-
Casolari, J.M.1
Brown, C.R.2
Komili, S.3
West, J.4
Hieronymus, H.5
Silver, P.A.6
-
6
-
-
0035941304
-
The membrane proteins, Spt23p and Mga2p, play distinct roles in the activation of Saccharomyces cerevisiae OLE1 gene expression. Fatty acid-mediated regulation of Mga2p activity is independent of its proteolytic processing into a soluble transcription activator
-
R. Chellappa, P. Kandasamy, C.S. Oh, Y. Jiang, M. Vemula, and C.E. Martin The membrane proteins, Spt23p and Mga2p, play distinct roles in the activation of Saccharomyces cerevisiae OLE1 gene expression. Fatty acid-mediated regulation of Mga2p activity is independent of its proteolytic processing into a soluble transcription activator J. Biol. Chem. 276 2001 43548 43556
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 43548-43556
-
-
Chellappa, R.1
Kandasamy, P.2
Oh, C.S.3
Jiang, Y.4
Vemula, M.5
Martin, C.E.6
-
7
-
-
0035339092
-
Negative regulation of Gcn4 and Msn2 transcription factors by Srb10 cyclin-dependent kinase
-
Y. Chi, M.J. Huddleston, X. Zhang, R.A. Young, R.S. Annan, S.A. Carr, and R.J. Deshaies Negative regulation of Gcn4 and Msn2 transcription factors by Srb10 cyclin-dependent kinase Genes Dev. 15 2001 1078 1092
-
(2001)
Genes Dev.
, vol.15
, pp. 1078-1092
-
-
Chi, Y.1
Huddleston, M.J.2
Zhang, X.3
Young, R.A.4
Annan, R.S.5
Carr, S.A.6
Deshaies, R.J.7
-
8
-
-
0029904102
-
Nuclear transport defects and nuclear envelope alterations are associated with mutation of the Saccharomyces cerevisiae NPL4 gene
-
C. DeHoratius, and P.A. Silver Nuclear transport defects and nuclear envelope alterations are associated with mutation of the Saccharomyces cerevisiae NPL4 gene Mol. Biol. Cell 7 1996 1835 1855
-
(1996)
Mol. Biol. Cell
, vol.7
, pp. 1835-1855
-
-
Dehoratius, C.1
Silver, P.A.2
-
10
-
-
0033756303
-
MGA2 and SPT23 are modifiers of transcriptional silencing in yeast
-
M.L. Dula, and S.G. Holmes MGA2 and SPT23 are modifiers of transcriptional silencing in yeast Genetics 156 2000 933 941
-
(2000)
Genetics
, vol.156
, pp. 933-941
-
-
Dula, M.L.1
Holmes, S.G.2
-
11
-
-
0035947238
-
The 19S regulatory particle of the proteasome is required for efficient transcription elongation by RNA polymerase II
-
A. Ferdous, F. Gonzalez, L. Sun, T. Kodadek, and S.A. Johnston The 19S regulatory particle of the proteasome is required for efficient transcription elongation by RNA polymerase II Mol. Cell 7 2001 981 991
-
(2001)
Mol. Cell
, vol.7
, pp. 981-991
-
-
Ferdous, A.1
Gonzalez, F.2
Sun, L.3
Kodadek, T.4
Johnston, S.A.5
-
12
-
-
0037022365
-
Complementary whole-genome technologies reveal the cellular response to proteasome inhibition by PS-341
-
J.A. Fleming, E.S. Lightcap, S. Sadis, V. Thoroddsen, C.E. Bulawa, and R.K. Blackman Complementary whole-genome technologies reveal the cellular response to proteasome inhibition by PS-341 Proc. Natl. Acad. Sci. USA 99 2002 1461 1466
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 1461-1466
-
-
Fleming, J.A.1
Lightcap, E.S.2
Sadis, S.3
Thoroddsen, V.4
Bulawa, C.E.5
Blackman, R.K.6
-
13
-
-
1842405431
-
Yeast cycloheximide-resistant crl mutants are proteasome mutants defective in protein degradation
-
U.M. Gerlinger, R. Guckel, M. Hoffmann, D.H. Wolf, and W. Hilt Yeast cycloheximide-resistant crl mutants are proteasome mutants defective in protein degradation Mol. Biol. Cell 8 1997 2487 2499
-
(1997)
Mol. Biol. Cell
, vol.8
, pp. 2487-2499
-
-
Gerlinger, U.M.1
Guckel, R.2
Hoffmann, M.3
Wolf, D.H.4
Hilt, W.5
-
14
-
-
0035876040
-
The 19S complex of the proteasome regulates nucleotide excision repair in yeast
-
T.G. Gillette, W. Huang, S.J. Russell, S.H. Reed, S.A. Johnston, and E.C. Friedberg The 19S complex of the proteasome regulates nucleotide excision repair in yeast Genes Dev. 15 2001 1528 1539
-
(2001)
Genes Dev.
, vol.15
, pp. 1528-1539
-
-
Gillette, T.G.1
Huang, W.2
Russell, S.J.3
Reed, S.H.4
Johnston, S.A.5
Friedberg, E.C.6
-
15
-
-
1942437536
-
Physical and functional association of RNA polymerase II and the proteasome
-
T.G. Gillette, F. Gonzalez, A. Delahodde, S.A. Johnston, and T. Kodadek Physical and functional association of RNA polymerase II and the proteasome Proc. Natl. Acad. Sci. USA 101 2004 5904 5909
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 5904-5909
-
-
Gillette, T.G.1
Gonzalez, F.2
Delahodde, A.3
Johnston, S.A.4
Kodadek, T.5
-
16
-
-
0032873415
-
Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae
-
A.L. Goldstein, and J.H. McCusker Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae Yeast 15 1999 1541 1553
-
(1999)
Yeast
, vol.15
, pp. 1541-1553
-
-
Goldstein, A.L.1
McCusker, J.H.2
-
17
-
-
0037134015
-
Recruitment of a 19S proteasome subcomplex to an activated promoter
-
F. Gonzalez, A. Delahodde, T. Kodadek, and S.A. Johnston Recruitment of a 19S proteasome subcomplex to an activated promoter Science 296 2002 548 550
-
(2002)
Science
, vol.296
, pp. 548-550
-
-
Gonzalez, F.1
Delahodde, A.2
Kodadek, T.3
Johnston, S.A.4
-
18
-
-
0347087494
-
Complementary roles for Rpn11 and Ubp6 in deubiquitination and proteolysis by the proteasome
-
A. Guterman, and M.H. Glickman Complementary roles for Rpn11 and Ubp6 in deubiquitination and proteolysis by the proteasome J. Biol. Chem. 279 2004 1729 1738
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 1729-1738
-
-
Guterman, A.1
Glickman, M.H.2
-
20
-
-
4544352942
-
Transcriptional regulatory code of a eukaryotic genome
-
C.T. Harbison, D.B. Gordon, T.I. Lee, N.J. Rinaldi, K.D. Macisaac, T.W. Danford, N.M. Hannett, J.B. Tagne, D.B. Reynolds, and J. Yoo Transcriptional regulatory code of a eukaryotic genome Nature 431 2004 99 104
-
(2004)
Nature
, vol.431
, pp. 99-104
-
-
Harbison, C.T.1
Gordon, D.B.2
Lee, T.I.3
Rinaldi, N.J.4
MacIsaac, K.D.5
Danford, T.W.6
Hannett, N.M.7
Tagne, J.B.8
Reynolds, D.B.9
Yoo, J.10
-
21
-
-
0034746779
-
The conserved npl4 protein complex mediates proteasome-dependent membrane-bound transcription factor activation
-
A.L. Hitchcock, H. Krebber, S. Frietze, A. Lin, M. Latterich, and P.A. Silver The conserved npl4 protein complex mediates proteasome-dependent membrane-bound transcription factor activation Mol. Biol. Cell 12 2001 3226 3241
-
(2001)
Mol. Biol. Cell
, vol.12
, pp. 3226-3241
-
-
Hitchcock, A.L.1
Krebber, H.2
Frietze, S.3
Lin, A.4
Latterich, M.5
Silver, P.A.6
-
22
-
-
0032567081
-
Dissecting the regulatory circuitry of a eukaryotic genome
-
F.C. Holstege, E.G. Jennings, J.J. Wyrick, T.I. Lee, C.J. Hengartner, M.R. Green, T.R. Golub, E.S. Lander, and R.A. Young Dissecting the regulatory circuitry of a eukaryotic genome Cell 95 1998 717 728
-
(1998)
Cell
, vol.95
, pp. 717-728
-
-
Holstege, F.C.1
Jennings, E.G.2
Wyrick, J.J.3
Lee, T.I.4
Hengartner, C.J.5
Green, M.R.6
Golub, T.R.7
Lander, E.S.8
Young, R.A.9
-
23
-
-
0034268493
-
Activation of a membrane-bound transcription factor by regulated ubiquitin/proteasome-dependent processing
-
T. Hoppe, K. Matuschewski, M. Rape, S. Schlenker, H.D. Ulrich, and S. Jentsch Activation of a membrane-bound transcription factor by regulated ubiquitin/proteasome-dependent processing Cell 102 2000 577 586
-
(2000)
Cell
, vol.102
, pp. 577-586
-
-
Hoppe, T.1
Matuschewski, K.2
Rape, M.3
Schlenker, S.4
Ulrich, H.D.5
Jentsch, S.6
-
24
-
-
0037205475
-
Multiple regulatory roles of a novel Saccharomyces cerevisiae protein, encoded by YOL002c, in lipid and phosphate metabolism
-
I.V. Karpichev, L. Cornivelli, and G.M. Small Multiple regulatory roles of a novel Saccharomyces cerevisiae protein, encoded by YOL002c, in lipid and phosphate metabolism J. Biol. Chem. 277 2002 19609 19617
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 19609-19617
-
-
Karpichev, I.V.1
Cornivelli, L.2
Small, G.M.3
-
25
-
-
0032775010
-
Epitope tagging of yeast genes using a PCR-based strategy: More tags and improved practical routines
-
M. Knop, K. Siegers, G. Pereira, W. Zachariae, B. Winsor, K. Nasmyth, and E. Schiebel Epitope tagging of yeast genes using a PCR-based strategy: more tags and improved practical routines Yeast 15 1999 963 972
-
(1999)
Yeast
, vol.15
, pp. 963-972
-
-
Knop, M.1
Siegers, K.2
Pereira, G.3
Zachariae, W.4
Winsor, B.5
Nasmyth, K.6
Schiebel, E.7
-
26
-
-
27544486193
-
The proteasome regulatory particle alters the SAGA coactivator to enhance its interactions with transcriptional activators
-
D. Lee, E. Ezhkova, B. Li, S.G. Pattenden, W.P. Tansey, and J.L. Workman The proteasome regulatory particle alters the SAGA coactivator to enhance its interactions with transcriptional activators Cell 123 2005 423 436
-
(2005)
Cell
, vol.123
, pp. 423-436
-
-
Lee, D.1
Ezhkova, E.2
Li, B.3
Pattenden, S.G.4
Tansey, W.P.5
Workman, J.L.6
-
27
-
-
0037007036
-
Transcription-coupled and DNA damage-dependent ubiquitination of RNA polymerase II in vitro
-
K.B. Lee, D. Wang, S.J. Lippard, and P.A. Sharp Transcription-coupled and DNA damage-dependent ubiquitination of RNA polymerase II in vitro Proc. Natl. Acad. Sci. USA 99 2002 4239 4244
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 4239-4244
-
-
Lee, K.B.1
Wang, D.2
Lippard, S.J.3
Sharp, P.A.4
-
28
-
-
0036829415
-
Intron status and 3′-end formation control cotranscriptional export of mRNA
-
E.P. Lei, and P.A. Silver Intron status and 3′-end formation control cotranscriptional export of mRNA Genes Dev. 16 2002 2761 2766
-
(2002)
Genes Dev.
, vol.16
, pp. 2761-2766
-
-
Lei, E.P.1
Silver, P.A.2
-
29
-
-
0141729263
-
Diverse roles for ubiquitin-dependent proteolysis in transcriptional activation
-
J.R. Lipford, and R.J. Deshaies Diverse roles for ubiquitin-dependent proteolysis in transcriptional activation Nat. Cell Biol. 5 2003 845 850
-
(2003)
Nat. Cell Biol.
, vol.5
, pp. 845-850
-
-
Lipford, J.R.1
Deshaies, R.J.2
-
30
-
-
0027220589
-
Protein traffic on the heat shock promoter: Parking, stalling, and trucking along
-
J. Lis, and C. Wu Protein traffic on the heat shock promoter: parking, stalling, and trucking along Cell 74 1993 1 4
-
(1993)
Cell
, vol.74
, pp. 1-4
-
-
Lis, J.1
Wu, C.2
-
31
-
-
0347787959
-
COP9 signalosome components play a role in the mating pheromone response of S. cerevisiae
-
V. Maytal-Kivity, R. Piran, E. Pick, K. Hofmann, and M.H. Glickman COP9 signalosome components play a role in the mating pheromone response of S. cerevisiae EMBO Rep. 3 2002 1215 1221
-
(2002)
EMBO Rep.
, vol.3
, pp. 1215-1221
-
-
Maytal-Kivity, V.1
Piran, R.2
Pick, E.3
Hofmann, K.4
Glickman, M.H.5
-
32
-
-
0042304165
-
Cks1-dependent proteasome recruitment and activation of CDC20 transcription in budding yeast
-
M.C. Morris, P. Kaiser, S. Rudyak, C. Baskerville, M.H. Watson, and S.I. Reed Cks1-dependent proteasome recruitment and activation of CDC20 transcription in budding yeast Nature 423 2003 1009 1013
-
(2003)
Nature
, vol.423
, pp. 1009-1013
-
-
Morris, M.C.1
Kaiser, P.2
Rudyak, S.3
Baskerville, C.4
Watson, M.H.5
Reed, S.I.6
-
33
-
-
0037335034
-
How the ubiquitin-proteasome system controls transcription
-
M. Muratani, and W.P. Tansey How the ubiquitin-proteasome system controls transcription Nat. Rev. Mol. Cell Biol. 4 2003 192 201
-
(2003)
Nat. Rev. Mol. Cell Biol.
, vol.4
, pp. 192-201
-
-
Muratani, M.1
Tansey, W.P.2
-
34
-
-
0027980321
-
The ubiquitin-proteasome pathway is required for processing the NF-kappa B1 precursor protein and the activation of NF-kappa B
-
V.J. Palombella, O.J. Rando, A.L. Goldberg, and T. Maniatis The ubiquitin-proteasome pathway is required for processing the NF-kappa B1 precursor protein and the activation of NF-kappa B Cell 78 1994 773 785
-
(1994)
Cell
, vol.78
, pp. 773-785
-
-
Palombella, V.J.1
Rando, O.J.2
Goldberg, A.L.3
Maniatis, T.4
-
35
-
-
0035977095
-
Mobilization of processed, membrane-tethered SPT23 transcription factor by CDC48(UFD1/NPL4), a ubiquitin-selective chaperone
-
M. Rape, T. Hoppe, I. Gorr, M. Kalocay, H. Richly, and S. Jentsch Mobilization of processed, membrane-tethered SPT23 transcription factor by CDC48(UFD1/NPL4), a ubiquitin-selective chaperone Cell 107 2001 667 677
-
(2001)
Cell
, vol.107
, pp. 667-677
-
-
Rape, M.1
Hoppe, T.2
Gorr, I.3
Kalocay, M.4
Richly, H.5
Jentsch, S.6
-
36
-
-
0031787969
-
Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation
-
F.P. Roth, J.D. Hughes, P.W. Estep, and G.M. Church Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation Nat. Biotechnol. 16 1998 939 945
-
(1998)
Nat. Biotechnol.
, vol.16
, pp. 939-945
-
-
Roth, F.P.1
Hughes, J.D.2
Estep, P.W.3
Church, G.M.4
-
37
-
-
0032168508
-
Active site mutants in the six regulatory particle ATPases reveal multiple roles for ATP in the proteasome
-
D.M. Rubin, M.H. Glickman, C.N. Larsen, S. Dhruvakumar, and D. Finley Active site mutants in the six regulatory particle ATPases reveal multiple roles for ATP in the proteasome EMBO J. 17 1998 4909 4919
-
(1998)
EMBO J.
, vol.17
, pp. 4909-4919
-
-
Rubin, D.M.1
Glickman, M.H.2
Larsen, C.N.3
Dhruvakumar, S.4
Finley, D.5
-
38
-
-
0026708316
-
In vivo function of the proteasome in the ubiquitin pathway
-
W. Seufert, and S. Jentsch In vivo function of the proteasome in the ubiquitin pathway EMBO J. 11 1992 3077 3080
-
(1992)
EMBO J.
, vol.11
, pp. 3077-3080
-
-
Seufert, W.1
Jentsch, S.2
-
39
-
-
0025242338
-
The OLE1 gene of Saccharomyces cerevisiae encodes the delta 9 fatty acid desaturase and can be functionally replaced by the rat stearoyl-CoA desaturase gene
-
J.E. Stukey, V.M. McDonough, and C.E. Martin The OLE1 gene of Saccharomyces cerevisiae encodes the delta 9 fatty acid desaturase and can be functionally replaced by the rat stearoyl-CoA desaturase gene J. Biol. Chem. 265 1990 20144 20149
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 20144-20149
-
-
Stukey, J.E.1
McDonough, V.M.2
Martin, C.E.3
-
40
-
-
0029774363
-
Isolation and characterization of a gene affecting fatty acid elongation in Saccharomyces cerevisiae
-
D.A. Toke, and C.E. Martin Isolation and characterization of a gene affecting fatty acid elongation in Saccharomyces cerevisiae J. Biol. Chem. 271 1996 18413 18422
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 18413-18422
-
-
Toke, D.A.1
Martin, C.E.2
-
41
-
-
0037179694
-
A cryptic protease couples deubiquitination and degradation by the proteasome
-
T. Yao, and R.E. Cohen A cryptic protease couples deubiquitination and degradation by the proteasome Nature 419 2002 403 407
-
(2002)
Nature
, vol.419
, pp. 403-407
-
-
Yao, T.1
Cohen, R.E.2
-
42
-
-
0038487228
-
Function of the p97-Ufd1-Npl4 complex in retrotranslocation from the ER to the cytosol: Dual recognition of nonubiquitinated polypeptide segments and polyubiquitin chains
-
Y. Ye, H.H. Meyer, and T.A. Rapoport Function of the p97-Ufd1-Npl4 complex in retrotranslocation from the ER to the cytosol: dual recognition of nonubiquitinated polypeptide segments and polyubiquitin chains J. Cell Biol. 162 2003 71 84
-
(2003)
J. Cell Biol.
, vol.162
, pp. 71-84
-
-
Ye, Y.1
Meyer, H.H.2
Rapoport, T.A.3
-
43
-
-
0030746204
-
Genetic redundancy between SPT23 and MGA2: Regulators of Ty-induced mutations and Ty1 transcription in Saccharomyces cerevisiae
-
S. Zhang, T.J. Burkett, I. Yamashita, and D.J. Garfinkel Genetic redundancy between SPT23 and MGA2: regulators of Ty-induced mutations and Ty1 transcription in Saccharomyces cerevisiae Mol. Cell. Biol. 17 1997 4718 4729
-
(1997)
Mol. Cell. Biol.
, vol.17
, pp. 4718-4729
-
-
Zhang, S.1
Burkett, T.J.2
Yamashita, I.3
Garfinkel, D.J.4
-
44
-
-
0032962409
-
MGA2 or SPT23 is required for transcription of the delta9 fatty acid desaturase gene, OLE1, and nuclear membrane integrity in Saccharomyces cerevisiae
-
S. Zhang, Y. Skalsky, and D.J. Garfinkel MGA2 or SPT23 is required for transcription of the delta9 fatty acid desaturase gene, OLE1, and nuclear membrane integrity in Saccharomyces cerevisiae Genetics 151 1999 473 483
-
(1999)
Genetics
, vol.151
, pp. 473-483
-
-
Zhang, S.1
Skalsky, Y.2
Garfinkel, D.J.3
|