LocustDB: A relational database for the transcriptome and biology of the migratory locust (Locusta migratoria)

BMC Genomics

Volumn 7, Issue , 2006, Pages

  Ma, Zongyuan ^a   Yu, Jun ^b   Kang, Le ^a  

^a INSTITUTE OF ZOOLOGY   (China)

^b INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOSINE; GUANINE; MESSENGER RNA; TRANSCRIPTOME;

ACCESS TO INFORMATION; ARTICLE; COMPUTER INTERFACE; COMPUTER PROGRAM; CONTROLLED STUDY; DNA CONTENT; DNA LIBRARY; EXPRESSED SEQUENCE TAG; GENE SEQUENCE; GENETIC CONSERVATION; GENETIC DATABASE; GENETIC SCREENING; GENETIC VARIABILITY; LOCUST; LOCUST DATABASE; MIGRATION; NONHUMAN; OPEN READING FRAME; PROTEIN DOMAIN; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; SPECIES DIVERSITY; ANIMAL; CHEMISTRY; GENETIC TRANSCRIPTION; GENETICS; GENOME; GENOMICS; INTERNET; LOCUSTA MIGRATORIA; METABOLISM; PHYSIOLOGY;

APIS MELLIFERA; BOMBYX MORI; HEXAPODA; INSECTA; INVERTEBRATA; LOCUSTA MIGRATORIA; ORTHOPTERA;

ANIMALS; DATABASES, GENETIC; EXPRESSED SEQUENCE TAGS; GENOME, INSECT; GENOMICS; INTERNET; LOCUSTA MIGRATORIA; TRANSCRIPTION, GENETIC; USER-COMPUTER INTERFACE;

EID: 33644753974     PISSN: 14712164     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-7-11     Document Type: Article

References (15)

1. Heckel DG: Genomics in pure and applied entomology. Annu Rev Entomol 2003, 48:235-260.
2. Davis GK, Patel NH: Shot, Long, and Beyond: molecular and embryological approaches to insect segmentation. Annu Rev Entomol 2002, 47:669-699.
3. Robinson GE, Grozinger CM, Whitfield CW: Sociogenomics: social life in molecular terms. Nat Rev Genet 2005, 6:257-270.
4. Kang L, Chen X, Zhou Y, Liu B, Zheng W, Li R, Wang J, Yu J: The analysis of large-scale gene expression correlated to the phase changes of the migratory locust. Proc Natl Acad Sci USA 2004, 101:17611-17615.
5. Ewing B, Hillier L, Wendl MC, Green P: Base-calling of automated sequencer traces using phred I. Accuracy assessment. Genome Res 1998, 8:175-185.
6. Ewing B, Green P: Base-calling of automated sequencer traces using phred II. Error probabilities. Genome Res 1998, 8:186-194.
7. Atschul SF, Gish W, Miller W, Myers EW, Lipman DJ: Basic local alignment search tool. J Mol Biol 1990, 215:403-410.
8. Harris MA, Clark J, Ireland A, Lomax J, Ashburner M, Foulger R, Eilbeck K, Lewis S, Marshall B, Mungall C, Richter J, Rubin GM, Blake JA, Bult C, Dolan M, Drabkin H, Eppig JT, Hill DP, Ni L, Ringwald M, Balakrishnan R. Cherry JM, Christie KR, Costanzo MC, Dwight SS, Engel S, Fisk DG, Hirschman JE, Hong EL, Nash RS, Sethuraman A, Theesfeld CL, Botstein D, Dolinski K, Feierbach B, Berardini T, Mundodi S, Rhee SY, Apweiler R, Barrell D, Camon E, Dimmer E, Lee V, Chisholm R, Gaudet P, Kibbe W, Kishore R, Schwarz EM, Sternberg P, Gwinn M, Hannick L, Wortman J, Berriman M, Wood V, de la Cruz N, Tonellato P, Jaiswal P, Seigfried T, White R, Gene Ontology Consortium: The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res 2004, 32:D258-D261.
9. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25:3389-3402.
10. Marchler-Bauer A, Anderson JB, DeWeese-Scott C, Fedorova ND, Geer LY, He S, Hurwitz DI, Jackson JD, Jacobs AR, Lanczycki CJ, Liebert CA, Liu C, Madej T, Marchler GH, Mazumder R, Nikolskaya AN, Panchenko AR, Rao BS, Shoemaker BA, Simonyan V, Song JS, Thiessen PA, Vasudevan S, Wang Y, Yamashita RA, Yin JJ, Bryant SH: CDD: a curated Entrez database of conserved domain alignments. Nucleic Acids Res 2003, 31:383-387.
11. Tatusov RL, Natale DA, Garkavtsev IV, Tatusova TA, Shankavaram UT, Rao BS, Kiryutin B, Galperin MY, Fedorova ND, Koonin EV: The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res 2001, 29:22-28.
12. Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Barrell D, Bateman A, Binns D, Biswàs M, Bradley P, Bork P, Bucher P, Copley RR, Courcelle E, Das U, Durbin R, Falquet L, Fleischmann W, Griffiths-Jones S, Haft D, Harte N, Hulo N, Kahn D, Kanapin A, Krestyaninova M, Lopez R, Letunic I, Lonsdale D, Silventoinen V, Orchard SE, Pagni M, Peyruc D, Ponting CP, Selengut JD, Servant F, Sigrist CJ, Vaughan R, Zdobnov EM: The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Res 2003, 31:315-318.
13. Kanehisa M, Goto S, Kawashima S, Okuno Y, Hattori M: The KEGG resource for deciphering the genome. Nucleic Acids Res 2004, 32:D277-D280.
14. Hubbard T, Andrews D, Caccamo M, Cameron G, Chen Y, Clamp M, Clarke L, Coates G, Cox T, Cunningham F, Curwen V, Cutts T, Down T, Durbin R, Femandez-Suarez XM, Gilbert J, Hammond M, Herrero J, Hotz H, Howe K, Iyer V, Jekosch K, Kahari A, Kasprzyk A, Keefe D, Keenan S, Kokocinsci F, London D, Longden I, McVicker G, Melsopp C, Meidl P, Potter S, Proctor G, Rae M, Rios D, Schuster M, Searle S, Severin J, Slater G, Smedley D, Smith J, Spooner W, Stabenau A, Stalker J, Storey R, Trevanion S, Ureta-Vidal A, Vogel J, White S, Woodwark C, Birney E: Ensembl 2005. Nucleic Acids Res 2005, 33:D447-D453.
15. Wang J, Xia Q, He X, Dai M, Ruan J, Chen J, Yu G, Yuan H, Hu Y, Li R, Feng T, Ye C, Lu C, Wang J, Li S, Wong GK, Yang H, Wang J, Xiang Z, Zhou Z, Yu J: SilkDB: a knowledgebase for silkworm biology and genomics. Nucleic Acids Res 2005, 33:D399-402.