-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res, 25: 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0025943153
-
Identification of the Escherichia coli sohB gene, a multicopy suppressor of the HtrA (DegP) null phenotype
-
Baird, L., Lipinska, B., Raina, S., and Georgopoulos, C. 1991. Identification of the Escherichia coli sohB gene, a multicopy suppressor of the HtrA (DegP) null phenotype. J. Bacteriol. 173: 5763-5770.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 5763-5770
-
-
Baird, L.1
Lipinska, B.2
Raina, S.3
Georgopoulos, C.4
-
3
-
-
0035783060
-
The MEROPS database as a protease information system
-
Barrett, A.J., Rawlings, N.D., and O'Brien, E.A. 2001. The MEROPS database as a protease information system. J. Struct. Biol. 134: 95-102.
-
(2001)
J. Struct. Biol.
, vol.134
, pp. 95-102
-
-
Barrett, A.J.1
Rawlings, N.D.2
O'Brien, E.A.3
-
4
-
-
0032952229
-
Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins
-
Bateman, A., Birney, E., Durbin, R., Eddy, S.R., Finn, R.D., and Sonnhammer, E.L. 1999. Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins. Nucleic Acids Res. 27: 260-262.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 260-262
-
-
Bateman, A.1
Birney, E.2
Durbin, R.3
Eddy, S.R.4
Finn, R.D.5
Sonnhammer, E.L.6
-
5
-
-
0035074910
-
The herpesvirus alkaline exonuclease belongs to the restriction endonuclease PD-(D/E)XK superfamily: Insight from molecular modeling and phylogenetic analysis
-
Bujnicki, J.M. and Rychlewski, L. 2001. The herpesvirus alkaline exonuclease belongs to the restriction endonuclease PD-(D/E)XK superfamily: Insight from molecular modeling and phylogenetic analysis. Virus Genes 22: 219-230.
-
(2001)
Virus Genes
, vol.22
, pp. 219-230
-
-
Bujnicki, J.M.1
Rychlewski, L.2
-
6
-
-
0033966457
-
The terminase enzyme from bacteriophage λ: A DNA-packaging machine
-
Catalano, C.E. 2000. The terminase enzyme from bacteriophage λ: A DNA-packaging machine. Cell. Mol. Life Sci. 57: 128-148.
-
(2000)
Cell. Mol. Life Sci.
, vol.57
, pp. 128-148
-
-
Catalano, C.E.1
-
7
-
-
16044364654
-
Structure of the human cytomegalovirus protease catalytic domain reveals a novel serine protease fold and catalytic triad
-
Chen, P., Tsuge, H., Almassy, R.J., Gribskov, C.L., Katoh, S., Vanderpool, D.L., Margosiak, S.A., Pinko, C., Matthews, D.A., and Kan, C.C. 1996. Structure of the human cytomegalovirus protease catalytic domain reveals a novel serine protease fold and catalytic triad. Cell 86: 835-843.
-
(1996)
Cell
, vol.86
, pp. 835-843
-
-
Chen, P.1
Tsuge, H.2
Almassy, R.J.3
Gribskov, C.L.4
Katoh, S.5
Vanderpool, D.L.6
Margosiak, S.A.7
Pinko, C.8
Matthews, D.A.9
Kan, C.C.10
-
8
-
-
0033178790
-
Comparative sequence analysis of the DNA packaging, head, and tail morphogenesis modules in the temperate cos-site Streptococcus thermophilus bacteriophage Sfi21
-
Desiere, F., Lucchini, S., and Brussow, H. 1999. Comparative sequence analysis of the DNA packaging, head, and tail morphogenesis modules in the temperate cos-site Streptococcus thermophilus bacteriophage Sfi21, Virology 260: 244-253.
-
(1999)
Virology
, vol.260
, pp. 244-253
-
-
Desiere, F.1
Lucchini, S.2
Brussow, H.3
-
9
-
-
0032712201
-
Scaffolding proteins and their role in viral assembly
-
Dokland, T. 1999. Scaffolding proteins and their role in viral assembly. Cell. Mol. Life Sci. 56: 580-603.
-
(1999)
Cell. Mol. Life Sci.
, vol.56
, pp. 580-603
-
-
Dokland, T.1
-
10
-
-
0029100892
-
Bacteriophage HK97 head assembly
-
Duda, R.L., Martincic, K., Xie, Z., and Hendrix, R.W. 1995. Bacteriophage HK97 head assembly. FEMS Microbiol. Rev. 17: 41-46.
-
(1995)
FEMS Microbiol. Rev.
, vol.17
, pp. 41-46
-
-
Duda, R.L.1
Martincic, K.2
Xie, Z.3
Hendrix, R.W.4
-
11
-
-
0037624841
-
3D-SHOTGUN: A novel, cooperative, fold-recognition metapredictor
-
Fischer, D. 2003. 3D-SHOTGUN: A novel, cooperative, fold-recognition metapredictor. Proteins 51: 434-441.
-
(2003)
Proteins
, vol.51
, pp. 434-441
-
-
Fischer, D.1
-
12
-
-
0038386050
-
3D-Jury: A simple approach to improve protein structure predictions
-
Ginalski, K., Elofsson, A., Fischer, D., and Rychlewski, L. 2003. 3D-Jury: A simple approach to improve protein structure predictions. Bioinformatics 19: 1015-1018.
-
(2003)
Bioinformatics
, vol.19
, pp. 1015-1018
-
-
Ginalski, K.1
Elofsson, A.2
Fischer, D.3
Rychlewski, L.4
-
13
-
-
0029978730
-
Bacteriophage Mu head assembly
-
Grimaud, R. 1996. Bacteriophage Mu head assembly. Virology 217: 200-210.
-
(1996)
Virology
, vol.217
, pp. 200-210
-
-
Grimaud, R.1
-
14
-
-
0036856210
-
Euclidian space and grouping of biological objects
-
Grishin, V.N. and Grishin, N.V. 2002. Euclidian space and grouping of biological objects. Bioinformatics 18: 1523-1534.
-
(2002)
Bioinformatics
, vol.18
, pp. 1523-1534
-
-
Grishin, V.N.1
Grishin, N.V.2
-
16
-
-
0031606857
-
Bacteriophage HK97 head assembly: A protein ballet
-
Hendrix, R.W. and Duda, R.L. 1998. Bacteriophage HK97 head assembly: A protein ballet. Adv. Virus Res. 50: 235-288.
-
(1998)
Adv. Virus Res.
, vol.50
, pp. 235-288
-
-
Hendrix, R.W.1
Duda, R.L.2
-
17
-
-
0030871678
-
Capsid assembly and DNA packaging in herpes simplex virus
-
Homa, F.L. and Brown, J.C. 1997. Capsid assembly and DNA packaging in herpes simplex virus. Rev. Med. Virol. 7: 107-122.
-
(1997)
Rev. Med. Virol.
, vol.7
, pp. 107-122
-
-
Homa, F.L.1
Brown, J.C.2
-
18
-
-
0036572959
-
Comparative analysis of the genomes of the temperate bacteriophages φ 11, φ 12 and φ 13 of Staphylococcus aureus 8325
-
Iandolo, J.J., Worrell, V., Groicher, K.H., Qian, Y., Tian, R., Kenton, S., Dorman, A., Ji, H., Lin, S., Loh, P., et al. 2002. Comparative analysis of the genomes of the temperate bacteriophages φ 11, φ 12 and φ 13 of Staphylococcus aureus 8325. Gene 289: 109-118.
-
(2002)
Gene
, vol.289
, pp. 109-118
-
-
Iandolo, J.J.1
Worrell, V.2
Groicher, K.H.3
Qian, Y.4
Tian, R.5
Kenton, S.6
Dorman, A.7
Ji, H.8
Lin, S.9
Loh, P.10
-
19
-
-
0033578684
-
Protein secondary structure prediction based on position-specific scoring matrices
-
Jones, D.T. 1999. Protein secondary structure prediction based on position-specific scoring matrices. J. Mol. Biol. 292: 195-202.
-
(1999)
J. Mol. Biol.
, vol.292
, pp. 195-202
-
-
Jones, D.T.1
-
20
-
-
0035967516
-
Investigating the role of histidine 157 in the catalytic activity of human cytomegalovirus protease
-
Khayat, R., Batra, R., Massariol, M.J., Lagace, L., and Tong, L. 2001. Investigating the role of histidine 157 in the catalytic activity of human cytomegalovirus protease. Biochemistry 40: 6344-6351.
-
(2001)
Biochemistry
, vol.40
, pp. 6344-6351
-
-
Khayat, R.1
Batra, R.2
Massariol, M.J.3
Lagace, L.4
Tong, L.5
-
21
-
-
0036600834
-
Evolution of protein structures and functions
-
Kinch, L.N. and Grishin, N.V. 2002a. Evolution of protein structures and functions. Curr. Opin. Struct. Biol. 12: 400-408.
-
(2002)
Curr. Opin. Struct. Biol.
, vol.12
, pp. 400-408
-
-
Kinch, L.N.1
Grishin, N.V.2
-
22
-
-
0036643429
-
Expanding the nitrogen regulatory protein superfamily: Homology detection at below random sequence identity
-
-. 2002b. Expanding the nitrogen regulatory protein superfamily: Homology detection at below random sequence identity. Proteins 48: 75-84.
-
(2002)
Proteins
, vol.48
, pp. 75-84
-
-
-
23
-
-
0026244229
-
MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
-
Kraulis, P.J. 1991. MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures. J. Appl. Cryst. 24: 946-950.
-
(1991)
J. Appl. Cryst.
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
24
-
-
0028181441
-
Hidden Markov models in computational biology. Applications to protein modeling
-
Krogh, A., Brown, M., Mian, I.S., Sjolander, K., and Haussler, D. 1994. Hidden Markov models in computational biology. Applications to protein modeling. J. Mol. Biol. 235: 1501-1531.
-
(1994)
J. Mol. Biol.
, vol.235
, pp. 1501-1531
-
-
Krogh, A.1
Brown, M.2
Mian, I.S.3
Sjolander, K.4
Haussler, D.5
-
25
-
-
0034695668
-
Maturation dynamics of a viral capsid: Visualization of transitional intermediate states
-
Lata, R., Conway, J.F., Cheng, N., Duda, R.L., Hendrix, R.W., Wikoff, W.R., Johnson, J.E., Tsuruta, H., and Steven, A.C. 2000. Maturation dynamics of a viral capsid: Visualization of transitional intermediate states. Cell 100: 253-263.
-
(2000)
Cell
, vol.100
, pp. 253-263
-
-
Lata, R.1
Conway, J.F.2
Cheng, N.3
Duda, R.L.4
Hendrix, R.W.5
Wikoff, W.R.6
Johnson, J.E.7
Tsuruta, H.8
Steven, A.C.9
-
26
-
-
0028844625
-
Sequencing and analysis of the prolate-headed lactococcal bacteriophage c2 genome and identification of the structural genes
-
Lubbers, M.W., Waterfield, N.R., Beresford, T.P., Le Page, R.W., and Jarvis, A.W. 1995. Sequencing and analysis of the prolate-headed lactococcal bacteriophage c2 genome and identification of the structural genes. Appl. Environ. Microbiol. 61: 4348-4356.
-
(1995)
Appl. Environ. Microbiol.
, vol.61
, pp. 4348-4356
-
-
Lubbers, M.W.1
Waterfield, N.R.2
Beresford, T.P.3
Le Page, R.W.4
Jarvis, A.W.5
-
27
-
-
0034780030
-
Pcons: A neural-network-based consensus predictor that improves fold recognition
-
Lundstrom, J., Rychlewski, L., Bujnicki, J., and Elofsson, A. 2001. Pcons: A neural-network-based consensus predictor that improves fold recognition. Protein Sci. 10: 2354-2362.
-
(2001)
Protein Sci.
, vol.10
, pp. 2354-2362
-
-
Lundstrom, J.1
Rychlewski, L.2
Bujnicki, J.3
Elofsson, A.4
-
28
-
-
0034801343
-
The genome of archaeal prophage PsiM100 encodes the lytic enzyme responsible for autolysis of Methanothermobacter wolfeii
-
Luo, Y., Pfister, P., Leisinger, T., and Wasseffallen, A. 2001. The genome of archaeal prophage PsiM100 encodes the lytic enzyme responsible for autolysis of Methanothermobacter wolfeii. J. Bacteriol. 183: 5788-5792.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 5788-5792
-
-
Luo, Y.1
Pfister, P.2
Leisinger, T.3
Wasseffallen, A.4
-
29
-
-
0031761964
-
Taxonomy of bacterial viruses: Establishment of tailed virus genera and the order Caudovirates
-
Maniloff, J. and Ackermann, H.W. 1998. Taxonomy of bacterial viruses: Establishment of tailed virus genera and the order Caudovirates. Arch. Virol. 143: 2051-2063.
-
(1998)
Arch. Virol.
, vol.143
, pp. 2051-2063
-
-
Maniloff, J.1
Ackermann, H.W.2
-
30
-
-
0037252683
-
CDD: A curated Entrez database of conserved domain alignments
-
Marchler-Bauer, A., Anderson, J.B., DeWeese-Scott, C., Fedorova, N.D., Geer, L.Y., He, S., Hurwitz, D.I., Jackson, J.D., Jacobs, A.R., Lanczycki, C.J., et al. 2003. CDD: A curated Entrez database of conserved domain alignments. Nucleic Acids Res. 31: 383-387.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 383-387
-
-
Marchler-Bauer, A.1
Anderson, J.B.2
DeWeese-Scott, C.3
Fedorova, N.D.4
Geer, L.Y.5
He, S.6
Hurwitz, D.I.7
Jackson, J.D.8
Jacobs, A.R.9
Lanczycki, C.J.10
-
31
-
-
0037106323
-
Sequence analysis of bacteriophage T4 DNA packaging/terminase genes 16 and 17 reveals a common ATPase center in the large subunit of viral terminases
-
Mitchell, M.S., Matsuzaki, S., Imai, S., and Rao, V.B. 2002. Sequence analysis of bacteriophage T4 DNA packaging/terminase genes 16 and 17 reveals a common ATPase center in the large subunit of viral terminases. Nucleic Acids Res. 30: 4009-4021.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 4009-4021
-
-
Mitchell, M.S.1
Matsuzaki, S.2
Imai, S.3
Rao, V.B.4
-
32
-
-
0036299014
-
Bacteriophage Mu genome sequence: Analysis and comparison with Mu-like prophages in Haemophilus, Neisseria and Deinococcus
-
Morgan, G.J., Hatfull, G.F., Casjens, S., and Hendrix, R.W. 2002. Bacteriophage Mu genome sequence: Analysis and comparison with Mu-like prophages in Haemophilus, Neisseria and Deinococcus. J. Mol. Biol. 317: 337-359.
-
(2002)
J. Mol. Biol.
, vol.317
, pp. 337-359
-
-
Morgan, G.J.1
Hatfull, G.F.2
Casjens, S.3
Hendrix, R.W.4
-
33
-
-
0034766951
-
The UL6 gene product forms the portal for entry of DNA into the herpes simplex virus capsid
-
Newcomb, W.W., Juhas, R.M., Thomsen, D.R., Homa, F.L., Burch, A.D., Weller, S.K., and Brown, J.C. 2001. The UL6 gene product forms the portal for entry of DNA into the herpes simplex virus capsid. J. Virol. 75: 10923-10932.
-
(2001)
J. Virol.
, vol.75
, pp. 10923-10932
-
-
Newcomb, W.W.1
Juhas, R.M.2
Thomsen, D.R.3
Homa, F.L.4
Burch, A.D.5
Weller, S.K.6
Brown, J.C.7
-
34
-
-
0034623005
-
T-Coffee: A novel method for fast and accurate multiple sequence alignment
-
Notredame, C., Higgins, D.G., and Heringa, J. 2000. T-Coffee: A novel method for fast and accurate multiple sequence alignment. J. Mol. Biol. 302: 205-217.
-
(2000)
J. Mol. Biol.
, vol.302
, pp. 205-217
-
-
Notredame, C.1
Higgins, D.G.2
Heringa, J.3
-
35
-
-
0037453742
-
Origins of highly mosaic mycobacteriophage genomes
-
Pedulla, M.L., Ford, M.E., Houtz, J.M., Karthikeyan, T., Wadsworth, C., Lewis, J.A., Jacobs-Sera, D., Falbo, J., Gross, J., Pannunzio, N.R., et al. 2003. Origins of highly mosaic mycobacteriophage genomes. Cell 113: 171-182.
-
(2003)
Cell
, vol.113
, pp. 171-182
-
-
Pedulla, M.L.1
Ford, M.E.2
Houtz, J.M.3
Karthikeyan, T.4
Wadsworth, C.5
Lewis, J.A.6
Jacobs-Sera, D.7
Falbo, J.8
Gross, J.9
Pannunzio, N.R.10
-
36
-
-
0035254950
-
GGDEF domain is homologous to adenylyl cyclase
-
Pei, J. and Grishin, N.V. 2001. GGDEF domain is homologous to adenylyl cyclase. Proteins 42: 210-216.
-
(2001)
Proteins
, vol.42
, pp. 210-216
-
-
Pei, J.1
Grishin, N.V.2
-
37
-
-
0242515820
-
Peptidase family U34 belongs to the superfamily of N-terminal nucleophile hydrolases
-
-. 2003. Peptidase family U34 belongs to the superfamily of N-terminal nucleophile hydrolases. Protein Sci. 12: 1131-1135.
-
(2003)
Protein Sci.
, vol.12
, pp. 1131-1135
-
-
-
38
-
-
0037433034
-
PCMA: Fast and accurate multiple sequence alignment based on profile consistency
-
Pei, J., Sadreyev, R., and Grishin, N.V. 2003. PCMA: Fast and accurate multiple sequence alignment based on profile consistency. Bioinformatics 19: 427-428.
-
(2003)
Bioinformatics
, vol.19
, pp. 427-428
-
-
Pei, J.1
Sadreyev, R.2
Grishin, N.V.3
-
39
-
-
0037689381
-
Complete sequence and comparative analysis of the genome of herpes B virus (Cercopithecine herpesvirus 1) from a rhesus monkey
-
Perelygina, L., Zhu, L., Zurkuhlen, H., Mills, R., Borodovsky, M., and Hilliard, J.K. 2003. Complete sequence and comparative analysis of the genome of herpes B virus (Cercopithecine herpesvirus 1) from a rhesus monkey. J. Virol. 77: 6167-6177.
-
(2003)
J. Virol.
, vol.77
, pp. 6167-6177
-
-
Perelygina, L.1
Zhu, L.2
Zurkuhlen, H.3
Mills, R.4
Borodovsky, M.5
Hilliard, J.K.6
-
40
-
-
0042389525
-
Point mutations in exon I of the herpes simplex virus putative terminase subunit, UL15, indicate that the most conserved residues are essential for cleavage and packaging
-
Przech, A.J., Yu, D., and Weller, S.K. 2003. Point mutations in exon I of the herpes simplex virus putative terminase subunit, UL15, indicate that the most conserved residues are essential for cleavage and packaging. J. Virol. 77: 9613-9621.
-
(2003)
J. Virol.
, vol.77
, pp. 9613-9621
-
-
Przech, A.J.1
Yu, D.2
Weller, S.K.3
-
41
-
-
0036081147
-
MEROPS: The protease database
-
Rawlings, N.D., O'Brien, E., and Barrett, A.J. 2002. MEROPS: The protease database. Nucleic Acids Res. 30: 343-346.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 343-346
-
-
Rawlings, N.D.1
O'Brien, E.2
Barrett, A.J.3
-
42
-
-
0034711002
-
Functional consequences of the Kaposi's sarcoma-associated herpesvirus protease structure: Regulation of activity and dimerization by conserved structural elements
-
Reiling, K.K., Pray, T.R., Craik, C.S., and Stroud, R.M. 2000. Functional consequences of the Kaposi's sarcoma-associated herpesvirus protease structure: Regulation of activity and dimerization by conserved structural elements. Biochemistry 39: 12796-12803.
-
(2000)
Biochemistry
, vol.39
, pp. 12796-12803
-
-
Reiling, K.K.1
Pray, T.R.2
Craik, C.S.3
Stroud, R.M.4
-
43
-
-
0038468334
-
The herpes simplex virus type 1 alkaline nuclease and single-stranded DNA binding protein mediate strand exchange in vitro
-
Reuven, N.B., Staire, A.E., Myers, R.S., and Weller, S.K. 2003. The herpes simplex virus type 1 alkaline nuclease and single-stranded DNA binding protein mediate strand exchange in vitro. J. Virol. 77: 7425-7433.
-
(2003)
J. Virol.
, vol.77
, pp. 7425-7433
-
-
Reuven, N.B.1
Staire, A.E.2
Myers, R.S.3
Weller, S.K.4
-
44
-
-
0033928112
-
Evidence for controlled incorporation of herpes simplex virus type 1 UL26 protease into capsids
-
Sheaffer, A.K., Newcomb, W.W., Brown, J.C., Gao, M., Weller, S.K., and Tenney, D.J. 2000. Evidence for controlled incorporation of herpes simplex virus type 1 UL26 protease into capsids. J. Virol. 74: 6838-6848.
-
(2000)
J. Virol.
, vol.74
, pp. 6838-6848
-
-
Sheaffer, A.K.1
Newcomb, W.W.2
Brown, J.C.3
Gao, M.4
Weller, S.K.5
Tenney, D.J.6
-
45
-
-
0027522436
-
Sequence analysis of the phage 21 genes for prohead assembly and head completion
-
Smith, M.P., and Feiss, M. 1993. Sequence analysis of the phage 21 genes for prohead assembly and head completion. Gene 126: 1-7.
-
(1993)
Gene
, vol.126
, pp. 1-7
-
-
Smith, M.P.1
Feiss, M.2
-
46
-
-
0033562324
-
The complete genome sequence of the Streptomyces temperate phage straight phiC31: Evolutionary relationships to other viruses
-
Smith, M.C., Burns, R.N., Wilson, S.E., and Gregory, M.A. 1999. The complete genome sequence of the Streptomyces temperate phage straight phiC31: Evolutionary relationships to other viruses. Nucleic Acids Res. 27: 2145-2155.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 2145-2155
-
-
Smith, M.C.1
Burns, R.N.2
Wilson, S.E.3
Gregory, M.A.4
-
47
-
-
0035162592
-
The COG database: New developments in phylogenetic classification of proteins from complete genomes
-
Tatusov, R.L., Natale, D.A., Garkavtsev, I.V., Tatusova, T.A., Shankavaram, U.T., Rao, B.S., Kiryutin, B., Galperin, M.Y., Fedorova, N.D., and Koonin, E.V. 2001. The COG database: New developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res. 29: 22-28.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 22-28
-
-
Tatusov, R.L.1
Natale, D.A.2
Garkavtsev, I.V.3
Tatusova, T.A.4
Shankavaram, U.T.5
Rao, B.S.6
Kiryutin, B.7
Galperin, M.Y.8
Fedorova, N.D.9
Koonin, E.V.10
-
48
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J.D., Higgins, D.G., and Gibson, T.J. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
49
-
-
0035815113
-
Evolution of function in protein superfamilies, from a structural perspective
-
Todd, A.E., Orengo, C.A., and Thornton, J.M. 2001. Evolution of function in protein superfamilies, from a structural perspective. J. Mol. Biol. 307: 1113-1143.
-
(2001)
J. Mol. Biol.
, vol.307
, pp. 1113-1143
-
-
Todd, A.E.1
Orengo, C.A.2
Thornton, J.M.3
-
50
-
-
0036882392
-
Viral proteases
-
Tong, L. 2002. Viral proteases. Chem. Rev. 102: 4609-4626.
-
(2002)
Chem. Rev.
, vol.102
, pp. 4609-4626
-
-
Tong, L.1
-
51
-
-
0029793554
-
A new serine-protease fold revealed by the crystal structure of human cytomegalovirus protease
-
Tong, L., Qian, C., Massariol, M.J., Bonneau, P.R., Cordingley, M.G., and Lagace, L. 1996. A new serine-protease fold revealed by the crystal structure of human cytomegalovirus protease. Nature 383: 272-275.
-
(1996)
Nature
, vol.383
, pp. 272-275
-
-
Tong, L.1
Qian, C.2
Massariol, M.J.3
Bonneau, P.R.4
Cordingley, M.G.5
Lagace, L.6
-
53
-
-
0030691115
-
The structure of CIpP at 2.3 Å resolution suggests a model for ATP-dependent proteolysis
-
Wang, J., Hartling, J.A., and Flanagan, J.M. 1997. The structure of CIpP at 2.3 Å resolution suggests a model for ATP-dependent proteolysis. Cell 91: 447-456.
-
(1997)
Cell
, vol.91
, pp. 447-456
-
-
Wang, J.1
Hartling, J.A.2
Flanagan, J.M.3
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