Insertion-deletion polymorphisms in 3′ regions of maize genes occur frequently and can be used as highly informative genetic markers

Plant Molecular Biology

Volumn 48, Issue 5-6, 2002, Pages 539-547

  Bhattramakki, Dinakar ^a   Dolan, Maureen ^b   Hanafey, Mike ^b   Wineland, Robin ^a   Vaske, Dave ^a   Register III, James C ^a   Tingey, Scott V ^b   Rafalski, Antoni ^b  

^a PIONEER HI BRED INTERNATIONAL INC   (United States)

^b DUPONT COMPANY   (United States)

Author keywords

Genetic mapping; Indel; Insertion deletion polymorphism; MITE; Molecular marker; SNP

Indexed keywords

CROPS; DATA MINING; GENES; GENETIC ENGINEERING;

POLYMORPHISMS;

MOLECULAR BIOLOGY;

ACARI; EMBRYOPHYTA; INSERTION SEQUENCES; TRANSPOSONS; ZEA; ZEA MAYS;

PLANT DNA;

ARTICLE; CHEMISTRY; CHROMOSOME MAP; DNA SEQUENCE; GENE; GENE DELETION; GENE EXPRESSION REGULATION; GENE FREQUENCY; GENETIC MARKER; GENETICS; GENOTYPE; MAIZE; MOLECULAR GENETICS; SINGLE NUCLEOTIDE POLYMORPHISM; TRANSPOSON;

CHROMOSOME MAPPING; DNA TRANSPOSABLE ELEMENTS; DNA, PLANT; GENE FREQUENCY; GENES, PLANT; GENETIC MARKERS; GENOTYPE; MOLECULAR SEQUENCE DATA; MUTAGENESIS, INSERTIONAL; POLYMORPHISM, SINGLE NUCLEOTIDE; SEQUENCE ANALYSIS, DNA; SEQUENCE DELETION; ZEA MAYS;

EID: 0036010772     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1014841612043     Document Type: Article

References (33)

1. Matrix attachment regions and structural collinearity in the genomes of two grass species
2. The y1 gene of maize codes for phytoene synthase
3. Tourist: A large family of small inverted repeat elements frequently associated with maize genes
4. Mobile inverted-repeat elements of the Tourist family are associated with the genes of many cereal grasses
5. Computational and experimental charaeterization of physically clustered simple sequence repeats in plants
6. The MITE family heartbreaker (Hbr): Molecular markers in maize
7. The genetics of corn
8. Base calling of automated sequencer traces using phred. II. Error probabilities
9. Base calling of automated sequencer traces using phred. I. Accuracy assessment
10. 2 population
11. Consed: A graphical tool for sequence finishing
12. Discovery, scoring and utilization of human single nucleotide polymorphisms: A multidisciplinary problem
13. Reproducibility testing of RAPD, AFLP and SSR markers in plants by a network of European laboratories
14. Reading bits of genetic information: Methods for single-nucleotide polymorphism analysis
15. MAPMAKER: An interactive computer package for constructing primary genetic linkage maps of experimental and natural populations
16. The intermated B73 × Mo17 maize mapping population: A progress report
17. Slipped-strand mispairing: A major mechanism for DNA sequence evolution
18. Isozyme polymorphisms in natural populations of Avena fatua and Avena barbata
19. PCR-amplified microsatellites as markers in plant genetics
20. Analysis of gene diversity in subdivided populations
21. The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis
22. Utility of SSRs for determining genetic similarities and relationships in maize using an agarose gel system
23. Mapping maize microsatellites and polymerase chain reaction confirmation of the targeted repeats using a CT primer
24. An evaluation of the utility of SSR loci as molecular markers in maize (Zea mays L): Comparisons with data from RFLPs and pedigree
25. Simple sequence repeats for germplasm analysis and mapping in maize
26. The complete sequence of 340 kb of DNA around the rice Adh1-adh2 region reveals interrupted colinearity with maize chromosome 4
27. Collinearity and its exceptions in orhologous adh regions of maize and sorghum
28. Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome
29. Mapping RFLP loci in maize using B-A translocations
30. LTR-retrotransposons and MITEs: Important players in the evolution of plant genomes