Proteomics of calcium-signaling components in plants

Phytochemistry

Volumn 65, Issue 12, 2004, Pages 1745-1776

  Reddy, Vaka S ^a   Reddy, Anireddy S N ^a  

^a Veterinary Dentistry and Oral Surgery   (United States)

Author keywords

ABA, abscisic acid; ABI, ABA insensitive; Arabidopsis thaliana; Bioinformatics; Ca2+ binding proteins; Calcium; Calmodulin; Calmodulin binding proteins; Mass spectrometry; Microarray, SELEX, ChIP, Tandom affinity purification; Proteome; Signaling

Indexed keywords

ACTIN DEPOLYMERIZING FACTOR; AQUAPORIN; CALCIUM; CALMODULIN BINDING PROTEIN; CARBOXYPEPTIDASE; DNA BINDING PROTEIN; MYOSIN LIGHT CHAIN; NITRATE REDUCTASE; PHENYLALANINE AMMONIA LYASE; PHOSPHOENOLPYRUVATE CARBOXYLASE; PROTEASOME; PROTEINASE INHIBITOR; SUCROSE SYNTHASE;

ARABIDOPSIS; BIOINFORMATICS; CALCIUM SIGNALING; CALCIUM TRANSPORT; DEPOLARIZATION; GENE CONTROL; GENE EXPRESSION; GENE IDENTIFICATION; GENE OVEREXPRESSION; GENE TARGETING; GENOME; GENOME ANALYSIS; GENOMICS; GRAVITROPISM; HIGH THROUGHPUT SCREENING; HYPERPOLARIZATION; MASS SPECTROMETRY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MOLECULAR GENETICS; OSMOTIC STRESS; PHOTOMORPHOGENESIS; PLANT; PLANT CELL; PROTEIN ANALYSIS; PROTEIN DEGRADATION; PROTEIN INTERACTION; PROTEIN PROTEIN INTERACTION; PROTEIN PURIFICATION; PROTEOMICS; REVIEW; SIGNAL TRANSDUCTION; STRESS; WATER TRANSPORT;

ARABIDOPSIS; CALCIUM SIGNALING; MODELS, BIOLOGICAL; PLANT PROTEINS; PLANTS; PROTEIN BINDING; PROTEOME; PROTEOMICS; SIGNAL TRANSDUCTION;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 3242768512     PISSN: 00319422     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.phytochem.2004.04.033     Document Type: Review

References (319)

1. Abo-el-Saad M., Wu R. A rice membrane calcium-dependent protein kinase is induced by gibberellin. Plant Physiol. 108:1995;787-793
2. Albrecht V., Weinl S., Blazevic D., D'Angelo C., Batistic O., Kolukisaoglu U., Bock R., Schulz B., Harter K., Kudla J. The calcium sensor CBL1 integrates plant responses to abiotic stresses. Plant J. 36:2003;457-470
3. Ali G.S., Reddy V.S., Lindgren P.B., Jakobek J.L., Reddy A.S.N. Differential expression of genes encoding calmodulin-binding proteins in response to bacterial pathogens and inducers of defense responses. Plant Mol. Biol. 51:2003;803-815
4. Allen, G.J., Schroeder, J.I., 2001. Combining genetics and cell biology to crack the code of plant cell calcium signaling. Sci STKE 2001, RE13
5. Allen G.A., Kwak J.M., Chu S.P., Llopis J., Tsien R.Y., Harper J.F., Schroeder J.I. Cameleon calcium indicator reports cytoplasmic calcium dynamics in Arabidopsis guard cells. Plant J. 19:1999;735-747
6. Allwood E.G., Smertenko A.P., Hussey P.J. Phosphorylation of plant actin-depolymerising factor by calmodulin-like domain protein kinase. FEBS Lett. 499:2001;97-100
7. Anandalakshmi R., Marathe R., Ge X., Herr J.M.J., Mau C., Mallory A., Pruss G., Bowman L., Vance V.B. A calmodulin-related protein that suppresses posttranscriptional gene silencing in plants. Science. 290:2000;142-144
8. 2+ hypersensitivity in transgenic plants. Plant J. 20:1999;171-182
9. Athwal G.S., Huber S.C. Divalent cations and polyamines bind to loop 8 of 14-3-3 proteins, modulating their interaction with phosphorylated nitrate reductase. Plant J. 29:2002;119-129
10. Axelsen K.B., Palmgren M.G. Inventory of the superfamily of P-type ion pumps in Arabidopsis. Plant Physiol. 126:2001;696-706
11. Baker S.S., Wilhelm K.S., Thomashow M.F. The 5'-region of Arabidopsis thaliana COR15a has cis-acting elements that confer cold-, drought-, and ABA-regulated gene expression. Plant Mol. Biol. 24:1994;701-713
12. Baluska F., Samaj R., Napier D., Volkmann D. Maize calreticulin localizes preferentially to plasmodesmata in root apex. Plant J. 19:1999;481-488
13. Bartling D., Butler H., Weiler E.W. Arabidopsis thaliana cDNA encoding a novel member of the EF-hand superfamily of calcium-binding proteins. Plant Physiol. 102:1993;1059
14. Baum G., Chen Y., Arazi T., Takatsuji H., Fromm H. A plant glutamate decarboxylase containing a calmodulin binding domain: Cloning, sequence and functional analysis. J. Biol. Chem. 268:1993;19610-19617
15. Baum G., Lev-Yadun S., Fridmann Y., Arazi T., Katsnelson H., Zik M., Fromm H. Calmodulin binding to glutamate decarboxylase is required for regulation of glutamate and GABA metabolism and normal development in plants. EMBO. J. 15:1996;2988-2996
16. Bibikova T.N., Zhigilei A., Gilroy S. Root hair growth in Arabidopsis thaliana is directed by calcium and an endogenous polarity. Planta. 203:1997;495-505
17. Blume B., Nurnberger T., Nass N., Scheel D. Receptor-mediated increase in cytoplasmic free calcium required for activation of pathogen defense in parsley. Plant Cell. 12:2000;1425-1440
18. Bouche N., Scharlat A., Snedden W., Bouchez D., Fromm H. A novel family of calmodulin-binding transcription activators in multicellular organisms. J. Biol. Chem. 277:2002;21851-21861
19. Bowler C., Fluhr R. The role of calcium and activated oxygens as signals for controlling cross-tolerance. Trends Plant Sci. 5:2000;241-246
20. Bowser J., Reddy A.S.N. Localization of a kinesin-like calmodulin-binding protein in dividing cells of Arabidopsis and tobacco. Plant J. 12:1997;1429-1438
21. Boyce J.M., Knight H., Deyholos M., Openshaw M.R., Galbraith D.W., Warren G., Knight M.R. The sfr6 mutant of Arabidopsis is defective in transcriptional activation via CBF/DREB1 and DREB2 and shows sensitivity to osmotic stress. Plant J. 34:2003;395-406
22. Braam J., Davis R.W. Rain-, wind-, and touch-induced expression of calmodulin and calmodulin-related genes in Arabidopsis. Cell. 60:1990;357-364
23. Braun P., Hu Y., Shen B., Halleck A., Koundinya M., Harlow E., LaBaer J. Proteome-scale purification of human proteins from bacteria. Proc. Natl. Acad. Sci. USA. 99:2002;2654-2659
24. Buaboocha T., Liao B., Zielinski R.E. Isolation of cDNA and genomic DNA clones encoding a calmodulin-binding protein related to a family of ATPases involved in cell division and vesicle fusion. Planta. 212:2001;774-781
25. Bush D.S., Jones R.L. Cytoplasmic calcium and α-amylase secretion from barley aleurone protoplasts. Eur. J. Cell Biol. 46:1988;466-469
26. +-ATPase from maize roots is phosphorylated in the C-terminal domain by a calcium-dependent protein kinase. Plant Physiol. 104:1998;549-555
27. Campbell A.K., Trewavas A.J., Knight M.R. Calcium imaging shows differential sensitivity to cooling and communication in luminous transgenic plants. Cell Calcium. 19:1996;211-218
28. 2+ from internal stores. Planta. 214:2001;126-134
29. Chan C.W.M., Schorrak L.M. Jr., Sussman M.R. A cyclic nucleotide-gated ion channel, CNGC2, is crucial for plant development and adaptation to calcium stress. Plant Physiol. 132:2003;728-731
30. Chang W.W.P., Huang L., Shen M., Webster C., Burlingame A.L., Roberts J.K.M. Patterns of protein synthesis and tolerance of anoxia in root tips of maize seedlings acclimated to a low-oxygen environment, and identification of proteins by mass spectrometry. Plant Physiol. 122:2000;295-317
31. Charpenteau M., Jaworski K., Ramirez B.C., Tretyn A., Ranjeva R., Ranty B. A receptor-like kinase from Arabidopsis thaliana is a calmodulin-binding protein. Biochem. J. 379:2004;841-848
32. Cheng N.H., Pittman J.K., Shigaki T., Hirschi K.D. The Arabidopsis cax1 mutant exhibits impaired ion homeostasis, development, and hormonal responses and reveals interplay among vacuolar transporters. Plant Cell. 15:2003;347-364
33. 2+ antiporter CAX1 to integrate calcium transport and salt tolerance. J. Biol. Chem. 279:2004;2922-2926
34. Cheng S.H., Sheen J., Gerrish C., Bolwell G.P. Molecular identification of phenylalanine ammonia-lyase as a substrate of a specific constitutively active Arabidopsis CDPK expressed in maize protoplasts. FEBS Lett. 503:2001;185-188
35. Cheng S.H., Willmann M.R., Chen H.C., Sheen J. Calcium signaling through protein kinases. The Arabidopsis calcium-dependent protein kinase gene family. Plant Physiol. 129:2002;469-485
36. Cheong Y.H., Kim K.N., Pandey G.K., Gupta R., Grant J.J., Luan S. CBL1, a calcium sensor that differentially regulates salt, drought, and cold responses in Arabidopsis. Plant Cell. 15:2003;1833-1845
37. Chikano H., Ogawa M., Ikeda Y., Koizumi N., Kusano T., Sano H. Two novel genes encoding SNF-1 related protein kinases from Arabidopsis thaliana: differential accumulation of AtSR1 and AtSR2 transcripts in response to cytokinins and sugars, and phosphorylation of sucrose synthase by AtSR2. Mol. Gen. Genet. 264:2001;674-681
38. Clark G.B., Roux S.J. Annexins of plant cells. Plant Physiol. 109:1995;1133-1139
39. Clayton H., Knight M.R., Knight H., McAinsh M.R., Hetherington A.M. Dissection of the ozone-induced calcium signature. Plant J. 17:1999;575-579
40. Clough S.J., Fengler K.A., Yu I.C., Lippok B., Smith R.K.J., Bent A.F. The Arabidopsis dnd1 "defense, no death" gene encodes a mutated cyclic nucleotide-gated ion channel. Proc. Natl. Acad. Sci. USA. 97:2000;9323-9328
41. Corcoran E.E., Joseph J.D., MacDonald J.A., Kane C.D., Haystead T.A., Means A.R. Proteomic analysis of calcium/calmodulin-dependent protein kinase I and IV in vitro substrates reveals distinct catalytic preferences. J. Biol. Chem. 278:2003;10516-10522
42. Cordeiro M.C., Piqueras R., de Oliveira D.E., Castresana C. Characterization of early induced genes in Arabidopsis thaliana responding to bacterial inoculation: identification of centrin and of a novel protein with two regions related to kinase domains. FEBS Lett. 434:1998;387-393
43. Craxton M. Genomic analysis of synaptotagmin genes. Genomics. 77:2001;43-49
44. 2+ dependency. EMBO. J. 16:1997;2565-2575
45. Dammann C., Ichida A., Hong B., Romanowsky S.M., Hrabak E.M., Harmon A.C., Pickard B.G., Harper J.F. Subcellular targeting of nine calcium-dependent protein kinase isoforms from Arabidopsis. Plant Physiol. 132:2003;1840-1848
46. Day I.S., Reddy V.S., Ali G.S., Reddy A.S. Analysis of EF-hand-containing proteins in Arabidopsis. Genome Biol. 3:2002;56.1-56.24
47. De Carvalho-Niebel F., Timmers A.C., Chabaud M., Defaux-Petras A., Barker D.G. The Nod factor-elicited annexin MtAnn1 is preferentially localised at the nuclear periphery in symbiotically activated root tissues of Medicago truncatula. Plant J. 32:2002;343-352
48. Demidchik V., Bowen H.C., Maathuis F.J., Shabala S.N., Tester M.A., White P.J., Davies J.M. Arabidopsis thaliana root non-selective cation channels mediate calcium uptake and are involved in growth. Plant J. 32:2002;799-808
49. Demidchik V., Davenport R.J., Tester M. Nonselective cation channels in plants. Annu. Rev. Plant Biol. 53:2002;67-107
50. Dennison K.L., Spalding E.P. Glutamate-gated calcium fluxes in Arabidopsis. Plant Physiol. 124:2000;1511-1514
51. Digonnet C., Aldon D., Leduc N., Dumas C., Rougier M. First evidence of a calcium transient in flowering plants at fertilization. Development. 124:1997;2867-2874
52. Douglas P., Moorhead G., Hong Y., Morrice N., MacKintosh C. Purification of a nitrate reductase kinase from Spinacea oleracea leaves, and its identification as a calmodulin-domain protein kinase. Planta. 206:1998;435-442
53. Drobak B.K., Watkins P.A.C. Inositiol (1, 4, 5) triphosphate production in plant cells: an early response to salinity and hyperosmotic stress. FEBS Lett. 481:2000;240-244
54. Ehrhardt D.W., Wais R., Long S.R. Calcium spiking in plant root hairs responding to Rhizobium nodulation signals. Cell. 85:1996;673-681
55. Epstein E. How calcium enhances plant salt tolerance. Science. 280:1998;1906-1907
56. Estruch J.J., Kadwell S., Merlin E., Crossland L. Cloning and characterization of a maize pollen-specific calcium-dependent calmodulin-independent protein kinase. Proc. Natl. Acad. Sci. USA. 91:1994;8837-8841
57. Fan L., Zheng S., Cui D., Wang X. Subcellular distribution and tissue expression of phospholipase D alpha, D beta, and D gamma in Arabidopsis. Plant Physiol. 119:1999;1371-1378
58. Fan L., Zheng S., Wang X. Antisense suppression of phospholipase D alpha retards abscisic acid- and ethylene-promoted senescence of postharvest Arabidopsis leaves. Plant Cell. 9:1997;2183-2196
59. Farmer P.K., Choi J.H. Calcium and phospholipid activation of a recombinant calcium-dependent protein kinase (DcCPK1) from carrot (Daucus carota L.). Biochim. Biophys. Acta. 1434:1999;6-17
60. Felle H. Auxin causes oscillations of cytosolic free calcium and pH in Zea mays coleoptiles. Planta. 174:1988;495-499
61. Fordham-Skelton A.P., Safadi F., Golovkin M., Reddy A.S.N. A non-radioactive method for isolating complementary DNAs encoding calmodulin-binding proteins. Plant Mol. Biol. Rep. 12:1994;355-363
62. Forler D., Kocher T., Rode M., Gentzel M., Izaurralde E., Wilm M. An efficient protein complex purification method for functional proteomics in higher eukaryotes. Nat. Biotechnol. 21:2003;89-92
63. 2+ and stimulates gene expression in transgenic parsley cell cultures. Plant J. 20:1999;109-117
64. 35S-labeled recombinant calmodulin as a probe. Plant Mol. Biol. Rep. 10:1992;199-206
65. (2+) flux in Arabidopsis leaf cells. Plant Cell Physiol. 42:2001;900-905
66. Furuyama T., Dzelzkalns V.A. A novel calcium-binding protein is expressed in Brassica pistils and anthers late in flower development. Plant Mol. Biol. 39:1999;729-737
67. Gardiner J.C., Harper J.D., Weerakoon N.D., Collings D.A., Ritchie S., Gilroy S., Cyr R.J., Marc J. A 90-kD phospholipase D from tobacco binds to microtubules and the plasma membrane. Plant Cell. 13:2001;2143-2158
68. Gavin A.C., Superti-Furga G. Protein complexes and proteome organization from yeast to man. Curr. Opin. Chem. Biol. 7:2003;21-27
69. Gavin A.C., Bosche M., Krause R., Grandi P., Marzioch M., Bauer A., Schultz J., Rick J.M., Michon A.M., Cruciat C.M., Remor M., Hofert C., Schelder M., Brajenovic M., Ruffner H., Merino A., Klein K., Hudak M., Dickson D., Rudi T., Gnau V., Bauch A., Bastuck S., Huhse B., Leutwein C., Heurtier M.A., Copley R.R., Edelmann A., Querfurth E., Rybin V., Drewes G., Raida M., Bouwmeester T., Bork P., Seraphin B., Kuster B., Neubauer G., Superti-Furga G. Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature. 415:2002;141-147
70. Gehring C.A., Williams D.A., Cody S.H., Parish R.W. Phototropism and geotropism in maize coleoptiles are spatially correlated with increases in cytosolic free calcium. Nature. 345:1990;528-530
71. (2+)-ATPases. Biochim. Biophys. Acta. 1465:2000;52-78
72. 2+- permeable channels in the plasma membrane of tomato cells. J. Membr. Biol. 155:1997;35-45
73. Gilroy S., Jones R.L. Gibberellic acid and abscisic acid coordinately regulate cytoplasmic calcium and secretory activity in barley aleurone protoplasts. Proc. Natl. Acad. Sci. USA. 89:1992;3591-3595
74. Golovkin M., Reddy A.S. A calmodulin-binding protein from Arabidopsis has an essential role in pollen germination. Proc. Natl. Acad. Sci. USA. 100:2003;10558-10563
75. 2+ level in tobacco seedlings in relation to thermotolerance. Plant Physiol. 116:1998;429-437
76. Grant M., Brown I., Adams S., Knight M., Ainslie A., Mansfield J. The RPM1 plant disease resistance gene facilitates a rapid and sustained increase in cytosolic calcium that is necessary for the oxidative burst and hypersensitive cell death. Plant J. 23:2000;441-450
77. 2+-binding protein involved in cryptochrome and phytochrome coaction. Science. 291:2001;487-490
78. Guo Y., Halfter U., Ishitani M., Zhu J.K. Molecular characterization of functional domains in the protein kinase SOS2 that is required for plant salt tolerance. Plant Cell. 13:2001;1383-1400
79. Guo Y., Xiong L., Song C.P., Gong D., Halfter U., Zhu J.K. A calcium sensor and its interacting protein kinase are global regulators of abscisic acid signaling in Arabidopsis. Dev. Cell. 2002;233-244
80. Guo F.Q., Okamoto M., Crawford N.M. Identification of a plant nitric oxide synthase gene involved in hormonal signaling. Science. 302:2003;100-103
81. Haab B.B., Dunham M.J., Brown P.O. Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions. Genome Biol. 2:2001;4.1-4.13
82. Halfter U., Ishitani M., Zhu J.K. The Arabidopsis SOS2 protein kinase physically interacts with and is activated by the calcium-binding protein SOS3. Proc. Natl. Acad. Sci. USA. 97:2000;3735-3740
83. 2+ channels at the plasma membrane of stomatal guard cells are activated by hyperpolarization and abscisic acid. Proc. Natl. Acad. Sci. USA. 97:2000;4967-4972
84. (2+) sensing in guard cells. Nature. 425:2003;196-200
85. 2+ differently in Arabidopsis leaves. Proc. Natl. Acad. Sci. USA. 100:2003;8583-8588
86. Harding S.A., Oh S.H., Roberts D.M. Transgenic tobacco expressing a foreign calmodulin gene shows an enhanced production of active oxygen species. EMBO. J. 17:1997;1137-1144
87. Harmon A.C. Calcium-regulated protein kinases of plants. Gravit. Space Biol. Bull. 16:2003;83-90
88. Harmon A.C., Lee J.-Y., Yoo B.C., Shao J. Plant membrane-associated protein kinases. Smallwood M. Membranes: Specialized Functions in Plant Cells. 1996;137-150 Bios Scientific Publishers, Oxford
89. 2+ signal? Trends Plant Sci. 5:2000;154-159
90. Harper J.F., Sussman M.R., Schaller G.E., Putnam-Evans C., Charbonneau H., Harmon A.C. A calcium-dependent protein kinase with a regulatory domain similar to calmodulin. Science. 252:1991;951-954
91. 2+-ATPase (ACA2) from Arabidopsis with an N-terminal autoinhibitory domain. J. Biol. Chem. 273:1998;1099-1106
92. Hendershot J.D.I., Esmon C.A., Lumb J.E., Rundle S.J. Identification and characterization of sequences encoding a 62-kilodalton B' regulatory subunit of Arabidopsis protein phosphatase 2A. Plant Physiol. 121:1999;311
93. Heo W.D., Lee S.H., Kim M.C., Kim J.C., Chung W.S., Chun H.J., Lee K.J., Park C.Y., Park H.C., Choi J.Y., Cho M.J. Involvement of specific calmodulin isoforms in salicylic acid-independent activation of plant disease resistance responses. Proc. Natl. Acad. Sci. USA. 19:1999;766-771
94. Hepler P.K. Tip growth in pollen tubes: calcium leads the way. Trends Plant Sci. 2:1997;79-80
95. Hirayama T., Ohto C., Mizoguchi T., Shinozaki K. A gene encoding a phosphatidylinositol-specific phospholipase C is induced by dehydration and salt stress in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA. 92:1995;3903-3907
96. Hirschi K.D. Expression of Arabidopsis CAX1 in tobacco: altered calcium homeostasis and increased stress sensitivity. Plant Cell. 11:1999;2113-2122
97. 2+ antiporter from Arabidopsis. Proc. Natl. Acad. Sci. USA. 93:1996;8782-8786
98. + antiporter. Plant Mol. Biol. 46:2001;57-65
99. Hrabak E.M., Dickmann L.J., Satterlee J.S., Sussman M.R. Characterization of eight new members of the calmodulin-like domain protein kinase gene family from Arabidopsis thaliana. Plant Mol. Biol. 31:1996;405-412
100. Hrabak E.M., Chan C.W., Gribskov M., Harper J.F., Choi J.H., Halford N., Kudla J., Luan S., Nimmo H.G., Sussman M.R., Thomas M., Walker-Simmons K., Zhu J.K., Harmon A.C. The Arabidopsis CDPK-SnRK superfamily of protein kinases. Plant Physiol. 132:2003;666-680
101. Hsieh H.L., Tong C.G., Thomas C., Roux S.J. Light-modulated abundance of an mRNA encoding a calmodulin-regulated, chromatin-associated NTPase in pea. Plant Mol. Biol. 30:1996;135-147
102. Hua J., Grisafi P., Cheng S.H., Fink G.R. Plant growth homeostasis is controlled by the Arabidopsis BON1 and BAP1 genes. Genes Dev. 15:2001;2263-2272
103. Huang J.Z., Hardin S.C., Huber S.C. Identification of a novel phosphorylation motif for CDPKs: phosphorylation of synthetic peptides lacking basic residues at P-3/P-4. Arch. Biochem. Biophys. 393:2001;61-66
104. Huber R., Romisch J., Paques E.P. The crystal and molecular structure of human annexin V, an anticoagulant protein that binds to calcium and membranes. EMBO J. 9:1990;3867-3874
105. Hughes M.A., Dunn M.A. The molecular biology of plant acclimation to low temperature. J. Exp. Bot. 47:1996;291-305
106. Hulskamp M., Misra S., Jurgens G. Genetic dissection of trichome cell development in Arabidopsis. Cell. 76:1994;555-566
107. Hwang I., Harper J.F., Liang F., Sze H. Calmodulin activation of an endoplasmic reticulum-located calcium pump involves an interaction with the N-terminal autoinhibitory domain. Plant Physiol. 122:2000;157-168
108. 2+ pump (ACA2) located in the endoplasmic reticulum of Arabidopsis. Proc. Natl. Acad. Sci. USA. 97:2000;6224-6229
109. Ishitani M., Xiong L., Stevenson B., Zhu J.K. Genetic analysis of osmotic and cold stress signal transduction in Arabidopsis: interactions and convergence of abscisic acid-dependent and abscisic acid-independent pathways. Plant Cell. 9:1997;1935-1949
110. Jaglo-Ottosen K.R., Gilmour S.J., Zarka D.G., Schabenberger O., Thomashow M.F. Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance. Science. 280:1998;104-106
111. Jambunathan N., Siani J.M., McNellis T.W. A humidity-sensitive Arabidopsis copine mutant exhibits precocious cell death and increased disease resistance. Plant Cell. 13:2001;2225-2240
112. 2+-binding protein that is induced by NaCl stress. Plant Mol. Biol. 37:1998;839-847
113. Jena P.K., Reddy A.S.N., Poovaiah B.W. Molecular cloning and sequencing of a cDNA for plant calmodulin: signal-induced changes in the expression of calmodulin. Proc. Natl. Acad. Sci. USA. 86:1989;3644-3649
114. Jensen R.B., Lykke-Andersen K., Frandsen G.I., Nielsen H.B., Haseloff J., Jespersen H.M., Mundy J., Skriver K. Promiscuous and specific phospholipid binding by domains in ZAC, a membrane-associated Arabidopsis protein with an ARF GAP zinc finger and a C2 domain. Plant Mol. Biol. 44:2000;799-814
115. Johnson C.H., Knight M.R., Kondo T., Masson P., Sedbrook J., Haley A., Trewavas A. Circadian oscillations of cytosolic and chloroplastic free calcium in plants. Science. 269:1995;1863-1865
116. Johnson C., Boden E., Desai M., Pascuzzi P., Arias J. In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor. Plant J. 28:2001;237-243
117. Kasuga M., Liu Q., Miura S., Yamaguchi-Shinozaki K., Shinozaki K. Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor. Nat. Biotechnol. 17:1999;287-291
118. Katagiri T., Takahashi S., Shinozaki K. Involvement of a novel Arabidopsis phospholipase D, AtPLDdelta, in dehydration-inducible accumulation of phosphatidic acid in stress signalling. Plant J. 26:2001;595-605
119. Kawano T., Kadono T., Furuichi T., Muto S., Lapeyrie F. Aluminum-induced distortion in calcium signaling involving oxidative bursts and channel regulation in tobacco BY-2 cells. Biochem. Biophys. Res. Commun. 308:2003;35-42
120. 2+ binding motifs. Plant Cell. 10:1998;255-266
121. Kersten B., Feilner T., Kramer A., Wehrmeyer S., Possling A., Witt I., Zanor M.I., Stracke R., Lueking A., Kreutzberger J., Lehrach H., Cahilll D.J. Generation of Arabidopsis protein chips for antibody and serum screening. Plant Mol. Biol. 52:2003;999-1010
122. Kiegle E., Gilliham M., Haseloff J., Tester M. Hyperpolarisation- activated calcium currents found only in cells from the elongation zone of Arabidopsis thaliana roots. Plant J. 21:2000;225-229
123. Kim K.N., Cheong Y.H., Gupta R., Luan S. Interaction specificity of Arabidopsis calcineurin B-like calcium sensors and their target kinases. Plant Physiol. 124:2000;1844-1853
124. Kim S.A., Kwak J.M., Jae S.K., Wang M.H., Nam H.G. Overexpression of the AtGluR2 gene encoding an Arabidopsis homolog of mammalian glutamate receptors impairs calcium utilization and sensitivity to ionic stress in transgenic plants. Plant Cell Physiol. 42:2001;74-84
125. Kim M.C., Lee S.H., Kim J.K., Chun H.J., Choi M.S., Chung W.S., Moon B.C., Kang C.H., Park C.Y., Yoo J.H., Kang Y.H., Koo S.C., Koo Y.D., Jung J.C., Kim S.T., Schulze-Lefert P., Lee S.Y., Cho M.J. Mlo, a modulator of plant defense and cell death, is a novel calmodulin-binding protein. Isolation and characterization of a rice Mlo homologue. J. Biol. Chem. 277:2002;19304-19314
126. Kim M.C., Panstruga R., Elliott C., Muller J., Devoto A., Yoon H.W., Park H.C., Cho M.J., Schulze-Lefert P. Calmodulin interacts with MLO protein to regulate defense against mildew in barley. Nature. 416:2002;447-451
127. Kim C.Y., Koo Y.D., Jin J.B., Moon B.C., Kang C.H., Kim S.T., Park B.O., Lee S.Y., Kim M.L., Hwang I., Kang K.Y., Bahk J.D., Cho M.J. Rice C2-domain proteins are induced and translocated to the plasma membrane in response to a fungal elicitor. Biochemistry. 42:2003;11625-11633
128. Kim K.N., Cheong Y.H., Grant J.J., Pandey G.K., Luan S. CIPK3, a calcium sensor-associated protein kinase that regulates abscisic acid and cold signal transduction in Arabidopsis. Plant Cell. 15:2003;411-423
129. Klein M., Perfus-Barbeoch L., Frelet A., Gaedeke N., Reinhardt D., Mueller-Roeber B., Martinoia E., Forestier C. The plant multidrug resistance ABC transporter AtMRP5 is involved in guard cell hormonal signalling and water use. Plant J. 33:2003;119-129
130. Klusener B., Young J.J., Murata Y., Allen G.J., Mori I.C., Hugouvieux V., Schroeder J.I. Convergence of calcium signaling pathways of pathogenic elicitors and abscisic acid in Arabidopsis guard cells. Plant Physiol. 130:2002;2152-2163
131. Knight H. Calcium signaling during abiotic stress in plants. Int. Rev. Cytol. 195:2000;269-324
132. Knight M.R., Campbell A.K., Smith S.M., Trewavas A.J. Transgenic plant aequorin reports the effects of touch and cold-shock and elicitors on cytoplasmic calcium. Nature. 352:1991;524-526
133. Knight M.R., Smith S.M., Trewavas A.J. Wind-induced plant motion immediately increases cytosolic calcium. Proc. Natl. Acad. Sci. USA. 89:1992;4967-4971
134. Knight H., Trewavas A.J., Knight M.R. Calcium signalling in Arabidopsis thaliana responding to drought and salinity. Plant J. 12:1997;1067-1078
135. Knight H., Veale E.L., Warren G.J., Knight M.R. The sfr6 mutation in Arabidopsis suppresses low-temperature induction of genes dependent on the CRT/DRE sequence motif. Plant Cell. 11:1999;875-886
136. Kohler C., Merkle T., Neuhaus G. Characterization of a novel gene family of putative cyclic nucleotide- and calmodulin-regulated ion channels in Arabidopsis thaliana. Plant J. 18:1999;97-104
137. 2+/phospholipid-binding (C2) domain in multiple plant proteins: novel components of the calcium-sensing apparatus. Plant Mol. Biol. 36:1998;627-637
138. Kudla J., Xu Q., Harter K., Gruissem W., Luan S. Genes for calcineurin B-like proteins in Arabidopsis are differentially regulated by stress signals. Proc. Natl. Acad. Sci. USA. 96:1999;4718-4723
139. Kurek I., Stoger E., Dulberger R., Christou P., Breiman A. Overexpression of the wheat FK506-binding protein 73 (FKBP73) and the heat-induced wheat FKBP77 in transgenic wheat reveals different functions of the two isoforms. Transgenic Res. 11:2002;373-379
140. Kutuzov M.A., Bennett N., Andreeva A.V. Interaction of plant protein Ser/Thr phosphatase PP7 with calmodulin. Biochem. Biophys. Res. Commun. 289:2001;634-640
141. Kwak J.M., Mori I.C., Pei Z.M., Leonhardt N., Torres M.A., Dangl J.L., Bloom R.E., Bodde S., Jones J.D., Schroeder J.I. NADPH oxidase AtrbohD and AtrbohF genes function in ROS-dependent ABA signaling in Arabidopsis. EMBO. J. 22:2003;2623-2633
142. Lacombe B., Becker D., Hedrich R., DeSalle R., Hollmann M., Kwak J.M., Schroeder J.I., Le Novere N., Nam H.G., Spalding E.P., Tester M., Turano F.J., Chiu J., Coruzzi G. The identity of plant glutamate receptors. Science. 292:2001;1486-1487
143. Lamb C.J., Dixon R.A. The oxidative burst in plant disease resistance. Annu. Rev. Plant Physiol. Plant Mol. Biol. 48:1997;251-275
144. Larkindale J., Knight M.R. Protection against heat stress-induced oxidative damage in Arabidopsis involves calcium, abscisic acid, ethylene, and salicylic acid. Plant Physiol. 128:2002;682-695
145. Lecourieux D., Mazars C., Pauly N., Ranjeva R., Pugin A. Analysis and effects of cytosolic free calcium increases in response to elicitors in Nicotiana plumbaginifolia cells. Plant Cell. 14:2002;2627-2641
146. Lee S.H., Kim J.C., Lee M.S., Heo W.D., Seo H.Y., Yoon H.W., Hong J.C., Lee S.Y., Bahk J.D., Hwang I., Cho J. Identification of a novel divergent calmodulin isoform from soybean which has differential ability to activate calmodulin-dependent enzymes. J. Biol. Chem. 270:1995;21806-21812
147. Lee S.H., Seo H.Y., Kim J.C., Heo W.D., Chung W.S., Lee K.J., Kim M.C., Cheong Y.H., Choi J.Y., Lim C.O., Cho M.J. Differential activation of NAD kinase by plant calmodulin isoforms. The critical role of domain I. J. Biol. Chem. 272:1997;9252-9259
148. Lee J.Y., Yoo B.C., Harmon A.C. Kinetic and calcium-binding properties of three calcium-dependent protein kinase isoenzymes from soybean. Biochemistry. 37:1998;6801-6809
149. Lee S.H., Kim M.C., Heo W.D., Kim J.C., Chung W.S., Park C.Y., Park H.C., Cheong Y.H., Kim C.Y., Lee S.H., Lee K.J., Bahk J.D., Lee S.Y., Cho M.J. Competitive binding of calmodulin isoforms to calmodulin-binding proteins: implications for the function of calmodulin isoforms in plants. Biochim. Biophys. Acta. 1433:1999;56-67
150. Lee S.S., Cho H.S., Yoon G.M., Ahn J.W., Kim H.H., Pai H.S. Interaction of NtCDPK1 calcium-dependent protein kinase with NtRpn3 regulatory subunit of the 26S proteasome in Nicotiana tabacum. Plant J. 33:2003;825-840
151. 2+ in Arabidopsis roots changes in response to touch but not gravity. Plant Physiol. 114:1997;789-800
152. Leng Q., Mercier R.W., Hua B.G., Fromm H., Berkowitz G.A. Electrophysiological analysis of cloned cyclic nucleotide-gated ion channels. Plant Physiol. 128:2002;400-410
153. Leung J., Merlot S., Giraudat J. The Arabidopsis ABSCISIC ACID-INSENSITIVE2 (ABI2) and ABI1 genes encode homologous protein phosphatases 2C involved in abscisic acid signal transduction. Plant Cell. 9:1997;759-771
154. 2 from the oxidative burst orchestrates the plant hypersensitive disease resistance response. Cell. 79:1994;583-593
155. Levine A., Pennell R.I., Alvarez M.E., Palmer R., Lamb C. Calcium-mediated apoptosis in a plant hypersensitive disease resistance response. Curr. Biol. 6:1996;427-437
156. 2+ and calmodulin-dependent protein kinase required for bacterial and fungal symbioses. Science. 303:2004;1361-1364
157. Li J., Lee Y.R., Assmann S.M. Guard cells possess a calcium-dependent protein kinase that phosphorylates the KAT1 potassium channel. Plant Physiol. 116:1998;785-795
158. (2+) elevation. Cell Calcium. 35:2004;71-77
159. Lid S.E., Gruis D., Jung R., Lorentzen J.A., Ananiev E., Chamberlin M., Niu X., Meeley R., Nichols S., Olsen O.A. The defective kernel 1 (dek1) gene required for aleurone cell development in the endosperm of maize grains encodes a membrane protein of the calpain gene superfamily. Proc. Natl. Acad. Sci. USA. 99:2002;5460-5465
160. Lim E.K., Roberts M.R., Bowles D.J. Biochemical characterization of tomato annexin p35. Independence of calcium binding and phosphatase activities. J. Biol. Chem. 273:1998;34920-34925
161. Liu J., Zhu J.K. An Arabidopsis mutant that requires increased calcium for potassium nutrition and salt tolerance. Proc. Natl. Acad. Sci. USA. 94:1997;14960-14964
162. Liu J., Zhu J.K. A calcium sensor homolog required for plant salt tolerance. Science. 280:1998;1943-1945
163. Liu M., Chen T.-Y., Ahamed B., Li J., Yau K.-W. Calcium-calmodulin modulation of the olfactory cyclic nucleotide-gated cation channel. Science. 266:1994;1348-1354
164. Liu Z., Xia M., Poovaiah B.W. Chimeric calcium/calmodulin-dependent protein kinase in tobacco: differential regulation by calmodulin isoforms. Plant Mol. Biol. 38:1998;889-897
165. Liu J., Ishitani M., Halfter U., Kim C.S., Zhu J.K. The Arabidopsis thaliana SOS2 gene encodes a protein kinase that is required for salt tolerance. Proc. Natl. Acad. Sci. USA. 97:2000;3730-3734
166. Lu S.X., Hrabak E.M. An Arabidopsis calcium-dependent protein kinase is associated with the endoplasmic reticulum. Plant Physiol. 128:2002;1008-1021
167. Lu Y., Harrington H.M. Isolation of tobacco cDNA clones encoding calmodulin-binding proteins and characterization of a known calmoduoin-binding domain. Plant Physiol. Biochem. 32:1994;413-422
168. Lu G., Sehnke P.C., Ferl R.J. Phosphorylation and calcium binding properties of an Arabidopsis GF14 brain protein homolog. Plant Cell. 6:1994;501-510
169. Lu Y.-T., Dharmasiri M.A.N., Harrington H.M. Characterization of a cDNA encoding a novel heat-shock protein that binds to calmodulin. Plant Physiol. 108:1995;1197-1202
170. Luan S., Kudla J., Rodriguez-Concepcion M., Yalovsky S., Gruissem W. Calmodulins and calcineurin B-like proteins: calcium sensors for specific signal response coupling in plants. Plant Cell. 14:2002;S389-S400
171. Ludwig A.A., Romeis T., Jones J.D. CDPK-mediated signalling pathways: specificity and cross-talk. J. Exp. Bot. 55:2004;181-188
172. 2+ activity in maize root protoplasts. Plant Physiol. 90:1989;1271-1274
173. 2+ preceds stomatal closure. Nature. 343:1990;186-188
174. 2+ during the response of stomatal guard cells to abscisic acid. Plant Cell. 4:1992;1113-1122
175. McAinsh M.R., Clayton H., Mansfield T.A., Hetherington A.M. Changes in stomatal behavior and guard cell cytoplasmic free calcium in response to oxidative stress. Plant Physiol. 111:1996;1031-1042
176. McCurdy D.W., Harmon A.C. Phosphorylation of a putative myosin light chain in Chara by calcium-dependent protein kinase. Protoplasma. 171:1992;85-88
177. McCurdy D.W., Kim M. Molecular cloning of a novel fimbrin-like cDNA from Arabidopsis thaliana. Plant Mol. Biol. 36:1998;23-31
178. McMichael R.W. Jr., Bachmann M., Huber S.C. Spinach leaf sucrose-phosphate synthase and nitrate reductase are phosphorylated/inactivated by multiple protein kinases in vitro. Plant Physiol. 108:1995;1077-1082
179. McMichael R.W. Jr., Kochansky J., Klein R.R., Huber S.C. Characterization of the substrate specificity of sucrose-phosphate synthase protein kinase. Arch. Biochem. Biophys. 321:1995;71-75
180. Meijer H.J., Munnik T. Phospholipid-based signaling in plants. Annu. Rev. Plant Biol. 54:2003;265-306
181. 2+ during pollen tube growth. Dev. Biol. 222:2000;84-98
182. Meyer K., Leube M.P., Grill E. A protein phosphatase 2C involved in ABA signal transduction in Arabidopsis thaliana. Science. 264:1994;1452-1455
183. Miao Z.H., Liu X., Lam E. TGA3 is a distinct member of the TGA family of bZIP transcription factors in Arabidopsis thaliana. Plant Mol. Biol. 25:1994;1-11
184. Miedema H., Bothwell J.H., Brownlee C., Davies J.M. Calcium uptake by plant cells-channels and pumps acting in concert. Trends Plant Sci. 6:2001;514-519
185. Mithofer A., Ebel J., Bhagwat A.A., Boller T., Neuhaus-Url G. Transgenic aequorin monitors calcium transients in soybean cells challenged with b-glucan or chitin elicitors. Planta. 207:1999;566-574
186. 2+/calmodulin-dependent protein kinase required for symbiotic nodule development: Gene identification by transcript-based cloning. Proc. Natl. Acad. Sci. USA. 101:2004;4701-4705
187. Mitsuda N., Isono T., Sato M.H. Arabidopsis CAMTA family proteins enhance V-PPase expression in pollen. Plant Cell Physiol. 44:2003;975-981
188. Moore R.C., Durso N.A., Cyr R.J. Elongation factor-1alpha stabilizes microtubules in a calcium/calmodulin-dependent manner. Cell Motil. Cytoskeleton. 41:1998;168-180
189. Morello L., Frattini M., Giani S., Christou P., Breviario D. Overexpression of the calcium-dependent protein kinase OsCDPK2 in transgenic rice is repressed by light in leaves and disrupts seed development. Transgenic Res. 9:2000;453-462
190. Moutinho A., Hussey P.J., Trewavas A.J., Malho R. cAMP acts as a second messenger in pollen tube growth and reorientation. Proc. Natl. Acad. Sci. USA. 98:2001;10481-10486
191. 2+-binding proteins associated with lipid bodies. Plant Mol. Biol. 44:2000;463-476
192. Nakai T., Konishi T., Zhang X.Q., Chollet R., Tonouchi N., Tsuchida T., Yoshinaga F., Mori H., Sakai F., Hayashi T. An increase in apparent affinity for sucrose of mung bean sucrose synthase is caused by in vitro phosphorylation or directed mutagenesis of Ser11. Plant Cell Physiol. 39:1998;1337-1341
193. Nakayama S., Kawasaki H., Kretsinger R. Evolution of EF-hand proteins. Carafoli E., Krebs J. Calcium Homeostasis. 2000;29-58 Springer, New York
194. Navazio L., Bewell M.A., Siddiqua A., Dickinson G.D., Galione A., Sanders D. Calcium release from the endoplasmic reticulum of higher plants elicited by the NADP metabolite nicotinic acid adenine dinucleotide phosphate. Proc. Natl. Acad. Sci. USA. 97:2000;8693-8698
195. 2+ by cyclic ADP-ribose from the endoplasmic reticulum of cauliflower florets. Plant Physiol. 125:2001;2129-2138
196. Neumann G.M., Condron R., Polya G.M. Phosphorylation of a plant protease inhibitor protein by wheat calcium dependent protein kinase. Plant Sci. 96:1994;69-79
197. Neumann G.M., Thomas I., Polya G.M. Identification of the site on potato carboxypeptidase inhibitor that is phosphorylated by plant calcium-dependent protein kinase. Plant Sci. 114:1996;45-51
198. (2+)-dependent protein kinase phosphorylating phosphoenolpyruvate carboxylase. Plant Cell Physiol. 39:1998;1010-1019
199. Ohta M., Guo Y., Halfter U., Zhu J.K. A novel domain in the protein kinase SOS2 mediates interaction with the protein phosphatase 2C ABI2. Proc. Natl. Acad. Sci. USA. 100:2003;11771-11776
200. Oppenheimer D.G., Pollock M.A., Vacik J., Szymanski D.B., Ericson B., Feldmann K., Marks D. Essential role of a kinesin-like protein in Arabidopsis trichome morphogenesis. Proc. Natl. Acad. Sci. USA. 94:1997;6261-6266
201. Otterhag L., Sommarin M., Pical C. N-terminal EF-hand-like domain is required for phosphoinositide-specific phospholipase C activity in Arabidopsis thaliana. FEBS Lett. 497:2001;165-170
202. Pappan K., Wang X. Molecular and biochemical properties and physiological roles of plant phospholipase D. Biochim. Biophys. Acta. 1439:1999;151-166
203. Pappan K., Zheng S., Wang X. Identification and characterization of a novel plant phospholipase D that requires polyphosphoinositides and submicromolar calcium for activity in Arabidopsis. J. Biol. Chem. 272:1997;7048-7054
204. 2+/calmodulin-dependent protein phosphatase calcineurin mediates salt adaptation in plants. Proc. Natl. Acad. Sci. USA. 95:1998;9681-9686
205. Patharkar O.R., Cushman J.C. A stress-induced calcium-dependent protein kinase from Mesembryanthemum crystallinum phospharylates a two-component pseudo-response regulator. Plant J. 24:2000;679-691
206. Patil S., Takezawa D., Poovaiah B.W. Chimeric plant calcium/calmodulin- dependent protein kinase gene with a neural visinin-like calcium-binding domain. Proc. Natl. Acad. Sci. USA. 92:1995;4897-4901
207. Pei Z.M., Murata Y., Benning G., Thomine S., Klusener B., Allen G.J., Grill E., Schroeder J.I. Calcium channels activated by hydrogen peroxide mediate abscisic acid signalling in guard cells. Nature. 406:2000;731-734
208. Perera I.Y., Heilmann I., Boss W.F. Transient and sustained increases in inositol 1,4,5-trisphosphate precede the differential growth response in gravistimulated maize pulvini. Proc. Natl. Acad. Sci. USA. 96:1999;5838-5843
209. (2+) status of the endoplasmic reticulum is altered by induction of calreticulin expression in transgenic plants. Plant Physiol. 126:2001;1092-1104
210. Plieth C., Trewavas A.J. Reorientation of seedlings in the earth's gravitational field induces cytosolic calcium transients. Plant Physiol. 129:2002;786-796
211. Polisensky D.H., Braam J. Cold-shock regulation of the Arabidopsis TCH genes and the effects of modulating intracellular calcium levels. Plant Physiol. 111:1996;1271-1279
212. Price A.H., Taylor A., Ripley S.J., Griffiths A., Trewavas A.J., Knight M.R. Oxidative signals in tobacco increase cytosolic calcium. Plant Cell. 6:1994;1301-1310
213. Puig O., Caspary F., Rigaut G., Rutz B., Bouveret E., Bragado-Nilsson E., Wilm M., Seraphin B. The tandem affinity purification (TAP) method: a general procedure of protein complex purification. Methods. 24:2001;218-229
214. + exchanger in Arabidopsis thaliana, by SOS2 and SOS3. Proc. Natl. Acad. Sci. USA. 99:2002;8436-8441
215. + exchange in Arabidopsis thaliana by the salt-overly-sensitive (SOS) pathway. J. Biol. Chem. 279:2004;207-215
216. Reddy A.S.N. Calcium: silver bullet in signaling. Plant Sci. 160:2001;381-404
217. Reddy A.S.N., Day I.S. Analysis of the myosins encoded in the recently completed Arabidopsis thaliana genome sequence. Genome Biol. 2:2001;24.1-24.17
218. Reddy A.S.N., Reddy V.S. Calcium as a messenger in stress signal transduction. Pessarakali M. Handbook of Plant and Crop Physiology. 2002;697-733 Mercel Dekker, New York
219. Reddy A.S.N., Takezawa D., Fromm H., Poovaiah B.W. Isolation and characterization of two cDNAs that encode for calmodulin-binding proteins from corn root tips. Plant Sci. 94:1993;109-117
220. Reddy A.S.N., Safadi F., Narasimhulu S.B., Golovkin M., Hu X. A novel plant calmodulin-binding protein with a kinesin heavy chain motor domain. J. Biol. Chem. 271:1996;7052-7060
221. Reddy A.S.N., Reddy V.S., Golovkin M. A calmodulin binding protein from Arabidopsis is induced by ethylene and contains a DNA-binding motif. Biochem. Biophys. Res. Commun. 279:2000;762-769
222. Reddy V.S., Ali G.S., Reddy A.S.N. Genes encoding calmodulin-binding proteins in the Arabidopsis genome. J. Biol. Chem. 277:2002;9840-9852
223. 2+ binding protein with one EF-hand motif, interacts with a microtubule motor protein and regulates trichome morphogenesis. Plant Cell. 16:2004;185-200
224. Ren B., Robert F., Wyrick J.J., Aparicio O., Jennings E.G., Simon I., Zeitlinger J., Schreiber J., Hannett N., Kanin E., Volkert T.L., Wilson C.J., Bell S.P., Young R.A. Genome-wide location and function of DNA binding proteins. Science. 290:2000;2306-2309
225. Rigaut G., Shevchenko A., Rutz B., Wilm M., Mann M., Seraphin B. A generic protein purification method for protein complex characterization and proteome exploration. Nat. Biotechnol. 17:1999;1030-1032
226. 2+-binding domain. J. Biol. Chem. 273:1998;15879-15882
227. Rodriguez-Concepcion M., Toledo-Ortiz G., Yalovsky S., Caldelari D., Gruissem W. Carboxyl-methylation of prenylated calmodulin CaM53 is required for efficient plasma membrane targeting of the protein. Plant J. 24:2000;775-784
228. Rodriguez-Concepcion M., Yalovsky S., Gruissem W. Protein prenylation in plants: old friends and new targets. Plant Mol. Biol. 39:1999;865-870
229. Rodriguez-Concepcion M., Yalovsky S., Zik M., Fromm H., Gruissem W. The prenylation status of a novel plant calmodulin directs plasma membrane or nuclear localization of the protein. EMBO. J. 18:1999;1996-2007
230. Rogers G.C., Hart C.L., Wedman K.P., Scholey J.M. Identification of kinesin-C, a calmodulin-binding carboxy-terminal kinesin in animal (Strongylocentrotus purpuratus) cells. J. Mol. Biol. 294:1999;1-8
231. Romeis T., Piedras P., Jones J.D. Resistance gene-dependent activation of a calcium-dependent protein kinase in the plant defense response. Plant Cell. 12:2000;803-816
232. Romeis T., Ludwig A.A., Martin R., Jones J.D. Calcium-dependent protein kinases play an essential role in a plant defense response. EMBO. J. 20:2001;5556-5567
233. Rozwadowski K., Zhao R., Jackman L., Huebert T., Burkhart W.E., Hemmingsen S.M., Greenwood J., Rothstein S.J. Characterization and immunolocalization of a cytosolic calcium-binding protein from Brassica napus and Arabidopsis pollen. Plant Physiol. 120:1999;787-798
234. 2+signalling pathways in plant cells. New Phytol. 151:2001;7-33
235. Russell A.J., Knight M.R., Cove D.J., Knight C.D., Trewavas A.J., Wang T.L. The moss, Physcomitrella patens, transformed with apoaequorin cDNA responds to cold shock, mechanical perturbation and pH with transient increases in cytoplasmic calcium. Transgenic Res. 5:1996;167-170
236. 2+-dependent proteinase from Arabidopsis roots. Arch. Biochem. Biophys. 348:1997;143-151
237. Safadi F., Reddy V.S., Reddy A.S.N. A pollen-specific novel calmodulin-binding protein with tetratricopeptide repeats. J. Biol. Chem. 275:2000;35457-35470
238. 2+-dependent protein kinase confers both cold and salt/drought tolerance on rice plants. Plant J. 23:2000;319-327
239. (2+)-dependent protein kinase that endows rice plants with cold- and salt-stresstolerance functions in vascular bundles. Plant Cell Physiol. 42:2001;1228-1233
240. Sanchez J.P., Chua N.H. Arabidopsis PLC1 is required for secondary responses to abscisic acid signals. Plant Cell. 13:2001;1143-1154
241. Sanders D., Brownlee C., Harper J. Communicating with calcium. Plant Cell. 11:1999;691-706
242. Sanders D., Pelloux J., Brownlee C., Harper J.F. Calcium at the crossroads of signaling. Plant Cell. 14:2002;S401-S417
243. Sang Y., Zheng S., Li W., Huang B., Wang X. Regulation of plant water loss by manipulating the expression of phospholipase D alpha. Plant J. 28:2001;135-144
244. Scrase-Field S.A., Knight M.R. Calcium: just a chemical switch? Curr. Opin. Plant Biol. 6:2003;500-506
245. Shacklock P.S., Read N.D., Trewavas A.J. Cytosolic free calcium mediates red-light induced photomorphogenesis. Nature. 358:1992;753-755
246. Shaw S.L., Long S.R. Nod factor elicits two separable calcium responses in Medicago truncatula root hair cells. Plant Physiol. 131:2003;976-984
247. 2+-dependent protein kinases and stress signal transduction in plants. Science. 274:1996;1900-1902
248. Shi J., Kim K.N., Ritz O., Albrecht V., Gupta R., Harter K., Luan S., Kudla J. Novel protein kinases associated with calcineurin B-like calcium sensors in Arabidopsis. Plant Cell. 11:1999;2393-2406
249. 2+ antiporters CAX1 and CAX3. Plant Mol. Biol. 50:2002;475-483
250. Singla-Pareek S.L., Reddy M.K., Sopory S.K. Genetic engineering of the glyoxalase pathway in tobacco leads to enhanced salinity tolerance. Proc. Natl. Acad. Sci. USA. 100:2003;14672-14677
251. Snedden W.A., Fromm H. Calmodulin, calmodulin-related proteins and plant responses to the environment. Trends Plant Sci. 3:1998;299-304
252. Snedden W.A., Fromm H. Calmodulin as a versatile calcium signal transducer in plants. New Phytologist. 151:2001;35-66
253. Snowman B.N., Geitmann A., Clarke S.R., Staiger C.J., Franklin F.C.H., Emons A.M.C., Franklin-Tong V.E. Singaling and the cytoskeleton in pollen tubes of Papaver rhoeas. Ann. Bot. (Lond.). 85:2000;49-57
254. Sonnemann J., Bauerle A., Winckler T., Mutzel R. A ribosomal calmodulin-binding protein from Dictyostelium. J. Biol. Chem. 266:1991;23091-23096
255. Stoelzle S., Kagawa T., Wada M., Hedrich R., Dietrich P. Blue light activates calcium-permeable channels in Arabidopsis mesophyll cells via the phototropin signaling pathway. Proc. Natl. Acad. Sci. USA. 100:2003;1456-1461
256. Subbaiah C.C., Bush D.S., Sachs M.M. Elevation of cytosolic calcium precedes anoxic gene expression in maize suspension-cultured cells. Plant Cell. 6:1994;1747-1762
257. 2+ signal in maize suspension-cultured cells. Plant Physiol. 118:1998;759-771
258. (2+)-dependent cysteine protease is associated with anoxia-induced root tip death in maize. J. Exp. Bot. 51:2000;721-730
259. Subramaniam R., Despres C., Brisson N. A functional homolog of mammalian protein kinase C participates in the elicitor-induced defense response in potato. Plant Cell. 9:1997;653-664
260. Sun X.T., Li B., Zhou G.M., Tang W.Q., Bai J., Sun D.Y., Zhou R.G. Binding of the maize cytosolic Hsp70 to calmodulin, and identification of calmodulin-binding site in Hsp70. Plant Cell Physiol. 41:2000;804-810
261. 2+/phospholipid-binding fold. Cell. 80:1995;929-938
262. Szymanski D.B., Liao B., Zielinski R.E. Calmodulin isoforms differentially enhance the binding of cauliflower nuclear proteins and recombinant TGA3 to a region derived from the Arabidopsis Cam-3 promoter. Plant Cell. 8:1996;1069-1077
263. Takahashi K., Isobe M., Muto S. An increase in cytosolic calcium ion concentration precedes hypoosmotic shock-induced activation of protein kinases in tobacco suspension culture cells. FEBS Lett. 401:1997;202-206
264. 2+-binding protein is induced by abscisic acid during dehydration. Plant Cell Physiol. 41:2000;898-903
265. Takezawa D. Characterization of a novel plant PP2C-like protein Ser/Thr phosphatase as a calmodulin-binding protein. J. Biol. Chem. 278:2003;38076-38083
266. Takezawa D., Liu Z.H., An G., Poovaiah B.W. Calmodulin gene family in potato: developmental and touch-induced expression of the mRNA encoding a novel isoform. Plant Mol. Biol. 27:1995;693-703
267. Taleb F., Fromm H. Calcium/calmodulin-binding transcription activators in plants and animals. Evans D.E., Bryant L. The Nuclear Envelope. 2004;Bioscientific Publishers Ltd, UK
268. Talke I.N., Blaudez D., Maathuis F.J., Sanders D. CNGCs: prime targets of plant cyclic nucleotide signalling? Trends Plant Sci. 8:2003;286-293
269. Thion L., Mazars C., Nacry P., Bouchez D., Moreau M., Ranjeva R., Thuleau P. Plasma membrane depolarization-activated calcium channels, stimulated by microtubule-depolymerizing drugs in wild-type Arabidopsis thaliana protoplasts, display constitutively large activities and a longer half-life in ton 2 mutant cells affected in the organization of cortical microtubules. Plant J. 13:1998;603-610
270. Thomashow M.F. Role of cold-responsive genes in plant freezing tolerance. Plant Physiol. 118:1998;1-8
271. (2+)-dependent phospholipid-binding proteins. Cell Mol. Life Sci. 59:2002;1467-1477
272. Torres M.A., Onouchi H., Hamada S., Machida C., Hammond-Kosack K.E., Jones J.D. Six Arabidopsis thaliana homologues of the human respiratory burst oxidase (gp91phox). Plant J. 14:1998;365-370
273. Trewavas A.J., Malho R. Signal perception and transduction: The origin of the phenotype. Plant Cell. 9:1997;1181-1195
274. 2+ signaling in plant cells: the big network! Curr. Opin. Plant Biol. 1:1998;428-433
275. Tuerk C., Gold L. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science. 249:1990;505-510
276. Turano F.J., Thakkar S.S., Fang T., Weisemann J.M. Characterization and expression of NAD(H)-dependent glutamate dehydrogenase genes in Arabidopsis. Plant Physiol. 113:1997;1329-1341
277. van Der Luit A.H., Olivari C., Haley A., Knight M.R., Trewavas A.J. Distinct calcium signaling pathways regulate calmodulin gene expression in tobacco. Plant Physiol. 121:1999;705-714
278. Vanoosthuyse V., Tichtinsky G., Dumas C., Gaude T., Cock J.M. Interaction of calmodulin, a sorting nexin and kinase-associated protein phosphatase with the Brassica oleracea S locus receptor kinase. Plant Physiol. 133:2003;919-929
279. Veena V., Reddy V.S., Sopory S.K. Glyoxalase I from Brassica juncea: molecular cloning, regulation and its over-expression confer tolerance in transgenic tobacco under stress. Plant J. 17:1999;385-395
280. Very A.A., Davies J.M. Hyperpolarization-activated calcium channels at the tip of Arabidopsis root hairs. Proc. Natl. Acad. Sci. USA. 97:2000;9801-9806
281. Vos J.W., Safadi F., Reddy A.S., Hepler P.K. The kinesin-like calmodulin binding protein is differentially involved in cell division. Plant Cell. 12:2000;979-990
282. Vucich V.A., Gasser C.S. Novel structure of a high molecular weight FK506 binding protein from Arabidopsis thaliana. Mol. Gen. Genet. 252:1996;510-517
283. Wang M., Van Duijn B., Schram A.W. Abscisic acid induces a cytosolic calcium decreases in barley aleurone protoplasts. FEBS Lett. 278:1991;69
284. Wang W., Takezawa D., Poovaiah B.W. A potato cDNA encoding a homologue of mammalian multidrug resistant P-glycoprotein. Plant Mol. Biol. 31:1996;683-687
285. Wang X. Multiple forms of phospholipase D in plants: the gene family, catalytic and regulatory properties, and cellular functions. Prog. Lipid Res. 39:2000;109-149
286. Wang H., Tang W., Zhu C., Perry S.E. A chromatin immunoprecipitation (ChIP) approach to isolate genes regulated by AGL15, a MADS domain protein that preferentially accumulates in embryos. Plant J. 32:2002;831-843
287. Wang C., Barry J.K., Min Z., Tordsen G., Rao A.G., Olsen O.A. The calpain domain of the maize DEK1 protein contains the conserved catalytic triad and functions as a cysteine proteinase. J. Biol. Chem. 278:2003;34467-34474
288. Wang D., Xu Y., Li Q., Hao X., Cui K.M., Sun F., Zhu Y. Transgenic expression of a putative calcium transporter affects the time of Arabidopsis flowering. Plant J. 33:2003;285-292
289. Welters P., Takegawa K., Emr S.D., Chrispeels M.J. AtVPS34, a phosphatidylinositol 3-kinase of Arabidopsis thaliana, is an essential protein with homology toa calcium-dependent lipid binding domain. Proc. Natl. Acad. Sci. USA. 91:1994;11398-11402
290. White P.J. Calcium channels in higher plants. Biochim. Biophys. Acta. 1465:2000;171-189
291. White P.J., Broadley M.R. Calcium in plants. Ann. Bot. (Lond.). 92:2003;487-511
292. Wood N.T., Haley A., Viry-Moussaid M., Johnson C.H., van der Luit A.H., Trewavas A.J. The calcium rhythms of different cell types oscillate with different circadian phases. Plant Physiol. 125:2001;787-796
293. Wu S.J., Ding L., Zhu J.-K. SOS1, a genetic locus essential for salt tolerance and potassium acquisition. Plant Cell. 8:1996;617-627
294. (2+) stress. Plant Physiol. 130:2002;128-137
295. Wyatt S.E., Tsou P.L., Robertson D. Expression of the high capacity calcium-binding domain of calreticulin increases bioavailable calcium stores in plants. Transgenic Res. 11:2002;1-10
296. Wymer C.L., Bibikova T.N., Gilory S. Cytoplasmic free calcium distributions during the developments of root hairs of Arabidopsis thaliana. Plant J. 12:1997;427-439
297. Xing T., Wang X.J., Malik K., Miki B.L. Ectopic expression of an Arabidopsis calmodulin-like domain protein kinase-enhanced NADPH oxidase activity and oxidative burst in tomato protoplasts. Mol. Plant Microbe Interact. 14:2001;1261-1264
298. Yamaguchi-Shinozaki K., Shinozaki K. A novel cis-acting element in an Arabidopsis gene is involved in responsiveness to drought, low-temperature, or high-salt stress. Plant Cell. 6:1994;251-264
299. Yamakawa H., Mitsuhara I., Ito N., Seo S., Kamada H., Ohashi Y. Transcriptionally and post-transcriptionally regulated response of 13 calmodulin genes to tobacco mosaic virus-mediated cell death and wounding in tobacco plant. Eur. J. Biochem. 268:2001;3916-3929
300. Yamakawa H., Katou S., Seo S., Mitsuhara I., Kamada H., Ohashi Y. Plant mitogen-activated protein kinase phosphatase interacts with calmodulins. J. Biol. Chem. 279:2003;928-936
301. Yang G., Komatsu S. Involvement of calcium-dependent protein kinase in rice (Oryza sativa L.) lamina inclination caused by brassinolide. Plant Cell Physiol. 41:2000;1243-1250
302. Yang T., Poovaiah B.W. Arabidopsis chloroplast chaperonin 10 is a calmodulin-binding protein. Biochem. Biophys. Res. Commun. 275:2000;601-607
303. Yang T., Poovaiah B.W. An ethylene up regulated gene encoding a calmodulin-binding protein involving in plant senescence. J. Biol. Chem. 275:2000;38467-38473
304. Yang T., Poovaiah B.W. A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants. J. Biol. Chem. 277:2002;45049-45058
305. Yang T., Poovaiah B.W. Hydrogen peroxide homeostasis: activation of plant catalase by calcium/calmodulin. Proc. Natl. Acad. Sci. USA. 99:2002;4097-4102
306. Yang T., Poovaiah B.W. Calcium/calmodulin-mediated signal network in plants. Trends Plant Sci. 8:2003;505-512
307. Yoo J.H., Cheong M.S., Park C.Y., Moon B.C., Kim M.C., Kang Y.H., Park H.C., Choi M.S., Lee J.H., Jung W.Y., Yoon H.W., Chung W.S., Cho M.J. Regulation of the dual specificity protein phosphatase, DsPTP1, through interactions with calmodulin. J. Biol. Chem. 279:2003;848-858
308. 2+-dependent protein kinase. FEBS Lett. 410:1997;126-130
309. Zhang L., Lu Y.T. Calmodulin-binding protein kinases in plants. Trends Plant Sci. 8:2003;123-127
310. 2+ binding properties of novel C2 domains of plant phospholipase dalpha and beta. J. Biol. Chem. 275:2000;19700-19706
311. Zhu H., Klemic J.F., Chang S., Bertone P., Casamayor A., Klemic K.G., Smith D., Gerstein M., Reed M.A., Snyder M. Analysis of yeast protein kinases using protein chips. Nat. Genet. 26:2000;283-289
312. Zhu H., Bilgin M., Bangham R., Hall D., Casamayor A., Bertone P., Lan N., Jansen R., Bidlingmaier S., Houfek T., Mitchell T., Miller P., Dean R.A., Gerstein M., Snyder M. Global analysis of protein activities using proteome chips. Science. 293:2001;2101-2105
313. Zhu J.K. Salt and drought stress signal transduction in plants. Annu. Rev. Plant Biol. 53:2002;247-273
314. Zhu J.K. Regulation of ion homeostasis under salt stress. Curr. Opin. Plant Biol. 6:2003;441-445
315. Zhu J.K., Liu J., Xiong L. Genetic analysis of salt tolerance in Arabidopsis. Evidence for a critical role of potassium nutrition. Plant Cell. 10:1998;1181-1191
316. Zielinski R.E. Calmodulin and calmodulin-binding proteins in plants. Ann. Rev. Plant Physiol. Plant Mol. Biol. 49:1998;697-725
317. Zielinski R.E. Characterization of three new members of the Arabidopsis thaliana calmodulin gene family: conserved and highly diverged members of the gene family functionally complement a yeast calmodulin null. Planta. 214:2002;446-455
318. Zielinski R.E. Preparation of recombinant plant calmodulin isoforms. Methods Mol. Biol. 172:2002;143-149
319. 2+-permeable ion channel involved in pathogen defense. Proc. Natl. Acad. Sci. USA. 94:1997;2751-2755