Vicariant speciation of curassows (Aves, Cracidae): A hypothesis based on mitochondrial DNA phylogeny

Auk

Volumn 121, Issue 3, 2004, Pages 682-694

  Pereira, Sérgio Luiz ^a   Baker, Allan J ^a  

^a NONE

Author keywords

[No Author keywords available]

Indexed keywords

BIOGEOGRAPHY; BIRD; MITOCHONDRIAL DNA; PHYLOGENY; SPECIATION (BIOLOGY);

AVES; CRACIDAE; CRAX; MITU; NOTHOCRAX; PAUXI UNICORNIS;

EID: 3242687237     PISSN: 00048038     EISSN: None     Source Type: Journal    
DOI: 10.1093/auk/121.3.682     Document Type: Article

References (66)

1. CAO, Y., J. ADACHI, A. JANKE, S. PÄÄBO, AND M. HASEGAWA. 1994. Phylogenetic relationships among eutherian orders estimated from inferred sequences of mitochondrial proteins: Instability of a tree based on a single gene. Journal of Molecular Evolution 39:519-527.
2. COLINVAUX, P. A., AND P. E. DE OLIVEIRA. 2001. Amazon plant diversity and climate through the Cenozoic. Palaeogeography, Palaeoclimatology, Palaeoecology 166:51-63.
3. CRACRAFT, J., AND R. O. PRUM. 1988. Patterns and processes of diversification: Speciation and historical congruence in some Neotropical birds. Evolution 42:603-620.
4. CRISCI, J. V. 2001. The voice of historical biogeography. Journal of Biogeography 28:157-168.
5. CROWE, T. M., AND L. L. SHORT. 1992. A new gallinaceous bird from the Oligocene of Nebraska, with comments on the phylogenetic position of Gallinuloididae. Pages 179-185 in Papers in Avian Paleontology Honoring Pierce Brodkorb (K. E. Campbell, Jr., Ed.). Science Series, Natural History Museum of Los Angeles County, no. 36.
6. DE ALMEIDA, F. F. M. 1976. The system of continental rifts bordering the Santos Basin, Brazil. Anais da Academia Brasileira de Ciências 48:15-26.
7. DELACOUR, J., AND D. AMADON. 1973. Curassows and Related Birds. American Museum of Natural History, New York.
8. DEL HOYO, J. 1994. Family Cracidae (chachalacas, guans, and curassows). Pages 310-363 in Handbook of the Birds of the World, vol. 2: New World Vultures to Guineafowl (J. del Hoyo, A. Elliot, and J. Sargatal, Eds.). Lynx Edicions, Barcelona, Spain.
9. FOSTER, P. G., AND D. A. HICKEY. 1999. Compositional bias may affect both DNA-based and protein-based phylogenetic reconstructions. Journal of Molecular Evolution 48:284-290.
10. GARCIA, C., AND D. M. BROOKS. 1997. Evolution of Crax sociobiology and phylogeny using behavioral and ecological characters. Pages 401-410 in Biology and Conservation of the Family Cracidae (S. D. Strahl, S. Beaujon, D. M. Brooks, A. J. Begazo, G. Sedaghatkish, and F. Olmos, Eds.). Hancock House Publishers, Blaine, Washington.
11. GOLDMAN, N., J. P. ANDERSON, AND A. G. RODRIGO. 2000. Likelihood-based tests of topologies in phylogenetics. Systematic Biology 49:652-670.
12. GRAU, E. T., S. L. PEREIRA, L. F. SILVEIRA, AND A. WANJTAL. 2003. Molecular markers contribute to a breeding programme of the extinct-in-the-wild Alagoas Curassow Mitu mitu and confirm the validity of the species. Bird Conservation International 13:115-126.
13. HACKETT, S. J. 1993. Phylogenetic and biogeographic relationships in the Neotropical genus Gymnopithys (Formicariidae). Wilson Bulletin 105:301-315.
14. HADDRATH, O., AND A. J. BAKER. 2001. Complete mitochondrial DNA genome sequences of extinct birds: Ratite phylogenetics and the vicariance biogeography hypothesis. Proceedings of the Royal Society of London, Series B 268:939-945.
15. HAFFER, J. 1969. Speciation in Amazonian forest birds. Science 165:131-137.
16. HAFFER, J. 1974. Avian speciation in tropical South America. Publications of the Nuttall Ornithological Club, no. 14.
17. HAGELBERG, E. 1994. Mitochondrial DNA from ancient bones. Pages 195-204 in Ancient DNA (B. Herrmann, and S. Hummel, Eds.). Springer, New York.
18. HAQ, B. U., J. HARDENBOL, AND P. R. VAIL. 1987. Chronology of fluctuating sea levels since the Triassic. Science 235:1156-1167.
19. HAUBOLD, B., AND T. WIEHE. 2001. Statistics of divergence time. Molecular Biology and Evolution 18:1157-1160.
20. HOOGHIEMSTRA, H., AND T. VAN DER HAMMEN. 1998. Neogene and Quaternary development of the Neotropical rain forest: The forest refugia hypothesis, and a literature overview. Earth-Science Reviews 44:147-183.
21. HOORN, C. 1994. An environmental reconstruction of the palaeo-Amazon River system (Middle-Late Miocene, NW Amazonia). Palaeogeography, Palaeoclimatology, Palaeoecology 112:187-238.
22. HOORN, C., J. GUERRERO, G. A. SARMIENTO, AND M. A. LORENTE. 1995. Andean tectonics as a cause for changing drainage patterns in Miocene northern South America. Geology 23:237-240.
23. HOVENKAMP, P. 1997. Vicariance events, not areas, should be used in biogeographical analysis. Cladistics 13:67-79.
24. HOVENKAMP, P. 2001. A direct method for the analysis of vicariance patterns. Cladistics 17:260-265.
25. HUELSENBECK, J. P., AND J. J. BULL. 1996. A likelihood ratio test to detect conflicting phylogenetic signal. Systematic Biology 45:92-98.
26. HUELSENBECK, J. P., J. J. BULL, AND C. W. CUNNINGHAM. 1996. Combining data in phylogenetic analysis. Trends in Ecology and Evolution 11:152-158.
27. JOSEPH, L., B. SLIKAS, K. RANKIN-BARANSKY, B. BAZARTSEREN, D. ALPERS, AND A. E. GILBERT. 1999. DNA evidence concerning the identities of Crax viridirostris Sclater, 1875, and C. estudilloi Allen, 1977. Ornitologia Neotropical 10:129-144.
28. KLUGE, A. G. 1989. A concern for evidence and a phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes). Systematic Zoology 38:7-25.
29. KOCHER, T. D., W. K. THOMAS, A. MEYER, S. V. EDWARDS, S. PÄÄBO, F. X. VILLABLANCA, AND A. C. WILSON. 1989. Dynamics of mitochondrial DNA evolution in animals: Amplification and sequencing with conserved primers. Proceedings of the National Academy of Sciences USA 86:6196-6200.
30. LUNDBERG, J. G., L. G. MARSHALL, J. GUERRERO, B. HORTON, M. C. S. L. MALABARBA, AND F. WESSELINGH. 1998. The stage for Neotropical fish diversification: A history of tropical South American rivers. Pages 13-48 in Phylogeny and Classification of Neotropical Fishes (L. R. Malabarba, R. E. Reis, R. P. Vari, Z. M. S. Lucena, and C. A. S. Lucena, Eds.). Editora Universitária PUCRS, Porto Alegre, Brazil.
31. MADDISON, D. R., AND W. P. MADDISON. 2000. MACCLADE, version 4.0. Sinauer Associates, Sunderland, Massachusetts.
32. MARKS B. D., S. J. HACKETT, AND A. P. CAPPARELLA. 2002. Historical relationships among the Neotropical lowland forest areas of endemism as determined by mitochondrial DNA sequence variation within the Wedge-billed Woodcreeper (Aves: Dendrocolaptidae: Glyphorynchus spirurus). Molecular Phylogenetics and Evolution 24:153-167.
33. MIYAKI, C. Y., S. R. MATIOLI, T. BURKE, AND A. WAJNTAL. 1998. Parrot evolution and paleogeographical events: Mitochondrial DNA evidence. Molecular Biology and Evolution 15:544-551.
34. MIYAMOTO, M. M., AND W. M. FITCH. 1995. Testing species phylogenies and phylogenetic methods with congruence. Systematic Biology 44:64-76.
35. MONSCH, K. A. 1998. Miocene fish faunas from the northwestern Amazonia basin (Colombia, Peru, Brazil) with evidence of marine incursions. Palaeogeography, Palaeoclimatology, Palaeoecology 143:31-50
36. MOOERS, A. O., AND E. C. HOLMES. 2000. The evolution of base composition and phylogenetic inference. Trends in Ecology and Evolution 15:365-369.
37. MORITZ, C., J. L. PATTON, C. J. SCHNEIDER, AND T. B. SMITH. 2000. Diversification of rainforest faunas: An integrated molecular approach. Annual Review of Ecology and Systematics 31:533-563.
38. NAHUM, L. A., S. L. PEREIRA, F. M. C. FERNANDES, S. R. MATIOLI, AND A. WAJNTAL. 2003. Diversification of Ramphastinae (Aves, Ramphastidae) prior to the Cretaceous/Tertiary boundary as shown by molecular clock of mtDNA sequences. Genetics and Molecular Biology 26:411-418.
39. NARDELLI, P. M. 1993. A Preservação do Mutum de Alagoas. Semana Ilustrada Editorial Ltda., Rio de Janeiro, Brazil.
40. NELSON, G., AND N. I. PLATNICK. 1981. Systematics and Biogeography: Cladistics and Vicariance. Columbia University Press, New York.
41. NOGUEIRA-NETO, P. 1973. A Criação de Animais Indígenas Silvestres Vertebrados. Edições Tecnapis, São Paulo, Brazil.
42. NORES, M. 1999. An alternative hypothesis for the origin of Amazonian bird diversity. Journal of Biogeography 26:475-485.
43. PEREIRA, S. L., A. BAKER, AND A. WAJNTAL. 2002. Combined nuclear and mitochondrial DNA sequences resolve the generic relationships within the Cracidae (Galliformes, Aves). Systematic Biology 51:946-958.
44. PEREIRA, S. L., C. Y. MIYAKI, AND A. WAJNTAL. 1996. DNA fingerprinting in the rare Black-fronted Piping-Guan Pipile jacutinga (Cracidae, Aves). Revista Brasileira de Biologia 56:783-791.
45. POSADA, D., AND K. A. CRANDALL. 1998. MODELTEST: Testing the model of DNA substitution. Bioinformatics 14:817-818.
46. POTTER, P. E. 1997. The Mesozoic and Cenozoic paleodrainage of South America: A natural history. Journal of South American Earth Sciences 10:331-344.
47. PRUM, R. O. 1988. Historical relationships among avian forest areas of endemism in the Neotropics. Pages 2562-2572 in Acta XIX Congressus International Ornithologici (H. Ouellet, Ed.). National Museum of Natural Sciences, Ottawa, Ontario.
48. RAMBAUT, A., AND N. C. GRASSLY. 1997. SEQ-GEN: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees. Computer Applied Biosciences 13:235-238.
49. RICCOMINI, C., A. U. PELOGGIA, J. C. SALONI, M. W. KOHNKE, AND R. M. FIGUEIRA. 1989. Neotectonic activity in the Serra do Mar rift system (southeastern Brazil). Journal of South American Earth Science 2:191-198.
50. RON, S. R. 2000. Biogeographic area relationship of lowland Neotropical rainforest based on raw distribution of vertebrate groups. Biological Journal of the Linnean Society 71:379-402.
51. RONQUIST, F. 1997. Dispersal-vicariance analysis: A new approach to the quantification of historical biogeography. Systematic Biology 46:195-203.
52. RONQUIST, F. R., AND J. P. HUELSENBECK. 2003. MRBAYES: Bayesian inference of phylogeny. Bioinformatics 19:1572-1574.
53. ROSSETTI, D. F. 2001. Late Cenozoic sedimentary evolution in northeastern Pará, Brazil, within the context of sea level changes. Journal of South American Earth Sciences 14:77-89.
54. RUSSO, C. A. M., N. TAKEZAKI, AND M. NEI. 1996. Efficiencies of different genes and different tree-building methods in recovering a known vertebrate phylogeny. Molecular Biology and Evolution 13:525-536.
55. SAFFORD, H. D. 1999. Brazilian páramos I. An introduction to the physical environment and vegetation of the campos de altitude. Journal of Biogeography 26:693-712.
56. SAMBROOK, J., E. F. FRITSCH, AND T. MANIATIS. 1989. Molecular Cloning: A Laboratory Manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
57. SILVA, J. M. C., AND D. C. OREN. 1996. Application of parsimony analysis of endemicity in Amazonian biogeography: An example with primates. Biological Journal of the Linnean Society 59:427-437.
58. STRIMMER, K., AND A. VON HAESELER. 1996. Quartet puzzling: A quartet maximum likelihood method for reconstructing tree topologies. Molecular Biology and Evolution 13:964-969.
59. SWOFFORD, D. L. 2001. PAUP*: Phylogenetic Analysis Using Parsimony (*and Other Methods), version 4.0. Sinauer Associates, Sunderland, Massachusetts.
60. SWOFFORD, D. L., G. J. OLSEN, P. J. WADDELL, AND D. M. HILLIS. 1996. Phylogenetic inferences. Pages 407-514 in Molecular Systematics (D. M. Hillis, C. Moritz, and B. K. Mable, Eds.). Sinauer Associates, Sunderland, Massachusetts.
61. TAMURA, K., AND M. NEI. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution 10:512-526.
62. UDVARDY, M. D. F. 1969. Dynamic Zoogeography. Van Nostrand Reinhold, New York.
63. VAN TUINEN, M., AND S. B. HEDGES. 2001. Calibration of avian molecular clocks. Molecular Biology and Evolution 18:206-213.
64. VAURIE, C. 1968. Taxonomy of the Cracidae (Aves). Bulletin of the American Museum of Natural History 138:135-243.
65. VOELKER, G. 2002. Systematics and historical biogeography of wagtails: Dispersal versus vicariance revisited. Condor 104:725-739.
66. ZINK, R. M., R. C. BLACKWELL-RAGO, AND F. RONQUIST. 2000. The shifting roles of dispersal and vicariance in biogeography. Proceedings of the Royal Society of London, Series B 267:497-503.