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Volumn 45, Issue 1, 1996, Pages 92-98

A likelihood ratio test to detect conflicting phylogenetic signal

Author keywords

Likelihood ratio test; Maximum likelihood; Phylogenetic heterogeneity; Phylogenetic methods

Indexed keywords


EID: 0030328811     PISSN: 10635157     EISSN: None     Source Type: Journal    
DOI: 10.1093/sysbio/45.1.92     Document Type: Article
Times cited : (176)

References (39)
  • 3
    • 0028963581 scopus 로고
    • Do long branches attract flies?
    • CARMEAN, D., AND B. CRESPI. 1995. Do long branches attract flies? Nature 373:666.
    • (1995) Nature , vol.373 , pp. 666
    • Carmean, D.1    Crespi, B.2
  • 4
    • 12044251056 scopus 로고
    • For consensus
    • DE QUEIROZ, A. 1993. For consensus (sometimes). Syst. Biol. 42:368-372.
    • (1993) Syst. Biol. , vol.42 , pp. 368-372
    • De Queiroz, A.1
  • 5
    • 0000989175 scopus 로고
    • Gene trees and species trees: Molecular systematics as one-character taxonomy
    • DOYLE, J. J. 1992. Gene trees and species trees: Molecular systematics as one-character taxonomy. Syst. Bot. 17:144-163.
    • (1992) Syst. Bot. , vol.17 , pp. 144-163
    • Doyle, J.J.1
  • 6
    • 0025788069 scopus 로고
    • Recombination in Escherichia coli and the definition of biological species
    • DYKHUIZEN, D. E., AND L. GREEN. 1991. Recombination in Escherichia coli and the definition of biological species. J. Bacteriol. 173:7257-7268.
    • (1991) J. Bacteriol. , vol.173 , pp. 7257-7268
    • Dykhuizen, D.E.1    Green, L.2
  • 7
    • 0027501821 scopus 로고
    • Taxonomic congruence versus total evidence, and amniote phylogeny inferred from fossils, molecules, and morphology
    • EERNISSE, D. J., AND A. G. KLUGE. 1993. Taxonomic congruence versus total evidence, and amniote phylogeny inferred from fossils, molecules, and morphology. Mol. Biol. Evol. 10:1170-1195.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 1170-1195
    • Eernisse, D.J.1    Kluge, A.G.2
  • 9
    • 84959798530 scopus 로고
    • Cases in which parsimony or compatibility methods will be positively misleading
    • FELSENSTEIN, J. 1978. Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27:401-410.
    • (1978) Syst. Zool. , vol.27 , pp. 401-410
    • Felsenstein, J.1
  • 10
    • 0001019878 scopus 로고
    • Tetrapod classification
    • GARDINER, B. G. 1982. Tetrapod classification. Zool. J. Linn. Soc. 74:207-232.
    • (1982) Zool. J. Linn. Soc. , vol.74 , pp. 207-232
    • Gardiner, B.G.1
  • 11
    • 0024258114 scopus 로고
    • Amniote phylogeny and the importance of fossils
    • GAUTHIER, J., A. G. KLUGE, AND T. ROWE. 1988. Amniote phylogeny and the importance of fossils. Cladistics 4:105-209.
    • (1988) Cladistics , vol.4 , pp. 105-209
    • Gauthier, J.1    Kluge, A.G.2    Rowe, T.3
  • 12
    • 0027526039 scopus 로고
    • Statistical tests of models of DNA substitution
    • GOLDMAN, N. 1993. Statistical tests of models of DNA substitution. J. Mol. Evol. 36:182-198.
    • (1993) J. Mol. Evol. , vol.36 , pp. 182-198
    • Goldman, N.1
  • 13
    • 0022376704 scopus 로고
    • Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
    • HASEGAWA, M., H. KISHINO, AND T. YANO. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22:160-174.
    • (1985) J. Mol. Evol. , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 14
    • 0028355535 scopus 로고
    • Molecular evidence for the origin of birds
    • HEDGES, S. B. 1994. Molecular evidence for the origin of birds. Proc. Natl. Acad. Sci. USA 91:2621-2624.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 2621-2624
    • Hedges, S.B.1
  • 15
    • 0025941643 scopus 로고
    • Pancreatic polypeptide and the sister group of birds
    • HEDGES, S. B., AND L. R. MAXSON. 1991. Pancreatic polypeptide and the sister group of birds. Mol. Biol. Evol. 8:888-891.
    • (1991) Mol. Biol. Evol. , vol.8 , pp. 888-891
    • Hedges, S.B.1    Maxson, L.R.2
  • 16
    • 0025133472 scopus 로고
    • Tetrapod phylogeny inferred from 18s and 28s ribosomal RNA sequences and a review of the evidence for amniote relationships
    • HEDGES, S. B., K. D. MOBERG, AND L. R. MAXSON. 1990. Tetrapod phylogeny inferred from 18S and 28S ribosomal RNA sequences and a review of the evidence for amniote relationships. Mol. Biol. Evol. 7:607-633.
    • (1990) Mol. Biol. Evol. , vol.7 , pp. 607-633
    • Hedges, S.B.1    Moberg, K.D.2    Maxson, L.R.3
  • 17
    • 12044253190 scopus 로고
    • An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis
    • HILLIS, D. M., AND J. J. BULL. 1993. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst. Biol. 42:182-192.
    • (1993) Syst. Biol. , vol.42 , pp. 182-192
    • Hillis, D.M.1    Bull, J.J.2
  • 18
    • 0026063996 scopus 로고
    • Evidence for biased gene conversion in concerted evolution of ribosomal DNA
    • HILLIS, D. M., C. MORITZ, C. A. PORTER, AND R. J. BAKER. 1991. Evidence for biased gene conversion in concerted evolution of ribosomal DNA. Science 251: 308-310.
    • (1991) Science , vol.251 , pp. 308-310
    • Hillis, D.M.1    Moritz, C.2    Porter, C.A.3    Baker, R.J.4
  • 19
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • (H. Munro, ed.). Academic Press, New York
    • JUKES, T. H., AND C. R. CANTOR. 1969. Evolution of protein molecules. Pages 21-132 in Mammalian protein metabolism (H. Munro, ed.). Academic Press, New York.
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 20
    • 84959806898 scopus 로고
    • A concern for evidence and a phylogenetic hypothesis of relationships among epicrates (Boidae, Serpentes)
    • KLUGE, A. G. 1989. A concern for evidence and a phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes). Syst. Zool. 38:7-25.
    • (1989) Syst. Zool. , vol.38 , pp. 7-25
    • Kluge, A.G.1
  • 21
    • 0028361182 scopus 로고
    • Recovering evolutionary trees under a more realistic model of sequence evolution
    • LOCKHART, P. J., M. A. STEEL, M. D. HENDY, AND D. PENNY. 1994. Recovering evolutionary trees under a more realistic model of sequence evolution. Mol. Biol. Evol. 11:605-612.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 605-612
    • Lockhart, P.J.1    Steel, M.A.2    Hendy, M.D.3    Penny, D.4
  • 22
    • 0002085148 scopus 로고
    • On the classification of the taxon Tetrapoda
    • LØTRUP, S. 1985. On the classification of the taxon Tetrapoda. Syst. Zool. 34:463-470.
    • (1985) Syst. Zool. , vol.34 , pp. 463-470
    • Løtrup, S.1
  • 23
    • 0024818674 scopus 로고
    • Structure and expression of dog apolipoprotein A-I, E, and C-I mRNAs: Implications for the evolution and functional constraints of apolipoprotein structure
    • Luo, C.-C., W.-H. LI, AND L. CHAN. 1989. Structure and expression of dog apolipoprotein A-I, E, and C-I mRNAs: Implications for the evolution and functional constraints of apolipoprotein structure. J. Lipid Res. 30:1735-1746.
    • (1989) J. Lipid Res. , vol.30 , pp. 1735-1746
    • Luo, C.-C.1    Li, W.-H.2    Chan, L.3
  • 25
    • 0026332291 scopus 로고
    • Evidence for horizontal gene transfer in Escherichia coli speciation
    • MEDIGUE, C., T. ROUXEL, P. VIGIER, A. HÉNAUT, AND A. DANCHIN. 1991. Evidence for horizontal gene transfer in Escherichia coli speciation. J. Mol. Biol. 222:851-856.
    • (1991) J. Mol. Biol. , vol.222 , pp. 851-856
    • Medigue, C.1    Rouxel, T.2    Vigier, P.3    Hénaut, A.4    Danchin, A.5
  • 26
    • 0026353378 scopus 로고
    • The branching order of mammals: Phylogenetic trees inferred from nuclear and mitochondrial molecular data
    • PESOLE, G., E. SBISA, F. MIGNOTTE, AND C. SACCONE. 1991. The branching order of mammals: Phylogenetic trees inferred from nuclear and mitochondrial molecular data. J. Mol. Evol. 33:537-542.
    • (1991) J. Mol. Evol. , vol.33 , pp. 537-542
    • Pesole, G.1    Sbisa, E.2    Mignotte, F.3    Saccone, C.4
  • 28
    • 0001466544 scopus 로고
    • A randomisation test of the null hypothesis that two cladograms are sample estimates of a parametric phylogenetic tree
    • RODRIGO, A. G., M. KELLY-BORGES, P. R. BERGQUIST, AND P. L. BERGQUIST. 1993. A randomisation test of the null hypothesis that two cladograms are sample estimates of a parametric phylogenetic tree. N.Z. J. Bot. 31:257-268.
    • (1993) N.Z. J. Bot. , vol.31 , pp. 257-268
    • Rodrigo, A.G.1    Kelly-Borges, M.2    Bergquist, P.R.3    Bergquist, P.L.4
  • 29
    • 0026743963 scopus 로고
    • Hierarchical analysis of linkage disequilibrium in Rhizobium populations: Evidence for sex?
    • SOUZA, V. T., T. NGUYEN, R. R. HUDSON, D. PIÑERO, AND R. E. LENSKI. 1992. Hierarchical analysis of linkage disequilibrium in Rhizobium populations: Evidence for sex? Proc. Natl. Acad. Sci. USA 89: 8389-8393.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 8389-8393
    • Souza, V.T.1    Nguyen, T.2    Hudson, R.R.3    Piñero, D.4    Lenski, R.E.5
  • 30
    • 0023479419 scopus 로고
    • Sequence convergence and functional adaptation of stomach lysozymes from foregut fermenters
    • STEWART, C.-B, AND A. C. WILSON. 1987. Sequence convergence and functional adaptation of stomach lysozymes from foregut fermenters. Cold Spring Harbor Symp. Quant. Biol. 52:891-899.
    • (1987) Cold Spring Harbor Symp. Quant. Biol. , vol.52 , pp. 891-899
    • Stewart, C.-B.1    Wilson, A.C.2
  • 32
    • 0001144354 scopus 로고
    • Phylogenetic estimation of plasmid exchange in bacteria
    • VALDEZ, A. M., AND D. PIÑERO. 1992. Phylogenetic estimation of plasmid exchange in bacteria. Evolution 46:641-656.
    • (1992) Evolution , vol.46 , pp. 641-656
    • Valdez, A.M.1    Piñero, D.2
  • 34
    • 0024497416 scopus 로고
    • Mutation rates differ among regions of the mammalian genome
    • WOLFE, K. H., P. M. SHARP, AND W.-H. LI. 1989. Mutation rates differ among regions of the mammalian genome. Nature 337:283-285.
    • (1989) Nature , vol.337 , pp. 283-285
    • Wolfe, K.H.1    Sharp, P.M.2    Li, W.-H.3
  • 35
    • 0027132974 scopus 로고
    • Maximum likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites
    • YANG, Z. 1993. Maximum likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Mol. Biol. Evol. 10:1396-1401.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 1396-1401
    • Yang, Z.1
  • 37
    • 0028961933 scopus 로고
    • On the use of nucleic acid sequences to infer early branching in the tree of life
    • YANG, Z., AND D. ROBERTS. 1995. On the use of nucleic acid sequences to infer early branching in the tree of life. Mol. Biol. Evol. 12:451-458.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 451-458
    • Yang, Z.1    Roberts, D.2
  • 38
    • 0026443498 scopus 로고
    • Statistical properties of bootstrap estimation of phylogenetic variability from nucleotide sequences. I. Four taxa with a molecular clock
    • ZHARKIKH, A., AND W.-H. LI. 1992a. Statistical properties of bootstrap estimation of phylogenetic variability from nucleotide sequences. I. Four taxa with a molecular clock. Mol. Biol. Evol. 9:1119-1147.
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 1119-1147
    • Zharkikh, A.1    Li, W.-H.2
  • 39
    • 0026484750 scopus 로고
    • Statistical properties of bootstrap estimation of phylogenetic variability from nucleotide sequences. II. Four taxa without a molecular clock
    • ZHARKIKH, A., AND W.-H. LI. 1992b. Statistical properties of bootstrap estimation of phylogenetic variability from nucleotide sequences. II. Four taxa without a molecular clock. J. Mol. Evol. 35:356-366.
    • (1992) J. Mol. Evol. , vol.35 , pp. 356-366
    • Zharkikh, A.1    Li, W.-H.2


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