Teaching an old dog new tricks: SINEs of canine genomic diversity

Proceedings of the National Academy of Sciences of the United States of America

Volumn 103, Issue 5, 2006, Pages 1157-1158

  Cordaux, Richard ^a   Batser, Mark A ^a  

^a LOUISIANA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

POLYADENYLIC ACID;

CHROMOSOME 12Q; CONGENITAL DEAFNESS; DOG; GENE; GENE EXPRESSION; GENE INSERTION; GENE MUTATION; GENETIC VARIABILITY; GENOME; HUMAN; NONHUMAN; NOTE; OPEN READING FRAME; PRIORITY JOURNAL; RETROPOSON; SHORT INTERSPERSED REPEAT; SILV GENE; WAARDENBURG SYNDROME;

ALTERNATIVE SPLICING; ANIMALS; DOGS; GENE EXPRESSION REGULATION; GENOME; HUMANS; MODELS, GENETIC; OPEN READING FRAMES; RETROELEMENTS; SHORT INTERSPERSED NUCLEOTIDE ELEMENTS; SPECIES SPECIFICITY; VARIATION (GENETICS);

CANIS FAMILIARIS;

EID: 31944449864     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0510714103     Document Type: Note

References (30)

1. Sutter, N. B. & Ostrander, E. A. (2004) Nat. Rev. Genet. 5, 900-910.
2. Parker, H. G. & Ostrander, E. A. (2005) PLoS Genet. 1, e58.
3. Lindblad-Toh, K., Wade, C. M., Mikkelsen, T. S., Karlsson, E. K., Jaffe, D. B., Kamal, M., Clamp, M., Chang, J. L., Kulbokas, E. J., Zody, M. C., et al. (2005) Nature 438, 803-819.
4. Clark, L. A., Wahl, J. M., Rees, C. A. & Murphy, K. E. (2006) Proc. Natl. Acad. Sci. USA 103, 1376-1381.
5. Nayak, C. S. & Isaacson, G. (2003) Ann. Otol. Rhinol. Laryngol. 112, 817-820.
6. Theos, A. C., Truschel, S. T., Raposo, G. & Marks, M. S. (2005) Pigment Cell Res. 18, 322-336.
7. Batzer, M. A. & Deininger, P. L. (2002) Nat. Rev. Genet. 3, 370-379.
8. Deininger, P. L., Moran, J. V., Batzer, M. A. & Kazazian, H. H., Jr. (2003) Curr. Opin. Genet. Dev. 13, 651-658.
9. Kazazian, H. H., Jr., & Moran, J. V. (1998) Nat. Genet. 19, 19-24.
10. Brookfield, J. F. (2005) Nat. Rev. Genet. 6, 128-136.
11. Han, J. S. & Boeke, J. D. (2005) BioEssays 27, 775-784.
12. Lander, E. S., Linton, L. M., Birren, B., Nusbaum, C., Zody, M. C., Baldwin, J., Devon, K., Dewar, K., Doyle, M., FitzHugh, W., et al. (2001) Nature 409, 860-921.
13. Han, J. S., Szak, S. T. & Boeke, J. D. (2004) Nature 429, 268-274.
14. Perepelitsa-Belancio, V. & Deininger, P. (2003) Nat. Genet. 35, 363-366.
15. Gilbert, N., Lutz-Prigge, S. & Moran, J. V. (2002) Cell 110, 315-325.
16. Symer, D. E., Connelly, C., Szak, S. T., Caputo, E. M., Cost, G. J., Parmigiani, G. & Boeke, J. D. (2002) Cell 110, 327-338.
17. Callinan, P. A., Wang, J., Herke, S. W., Garber, R. K., Liang, P. & Batzer, M. A. (2005) J. Mol. Biol. 348, 791-800.
18. Han, K., Sen, S. K., Wang, J., Callinan, P. A., Lee, J., Cordaux, R., Liang, P. & Batzer, M. A. (2005) Nucleic Acids Res. 33, 4040-4052.
19. Deininger, P. L. & Batzer, M. A. (1999) Mol. Genet. Metab. 67, 183-193.
20. Chen, J. M., Stenson, P. D., Cooper, D. N. & Ferec, C. (2005) Hum. Genet. 117, 411-427.
21. Kirkness, E. F., Bafna, V., Halpern, A. L., Levy, S., Remington, K., Rusch, D. B., Delcher, A. L., Pop, M., Wang, W., Fraser, C. M., et al. (2003) Science 301, 1898-1903.
22. Wang, W. & Kirkness, E. F. (2005) Genome Res. 15, 1798-1808.
23. Lin, L., Faraco, J., Li, R., Kadotani, H., Rogers, W., Lin, X., Qiu, X., de Jong, P. J., Nishino, S. & Mignot, E. (1999) Cell 98, 365-376.
24. Pele, M., Tiret, L., Kessler, J. L., Blot, S. & Panthier, J. J. (2005) Hum. Mol. Genet. 14, 1417-1427.
25. Hedges, D. J., Callinan, P. A., Cordaux, R., Xing, J., Barnes, E. & Batzer, M. A. (2004) Genome Res. 14, 1068-1075.
26. Chimpanzee Sequencing and Analysis Consortium (2005) Nature 437, 69-87.
27. Cordaux, R., Hedges, D. J. & Batzer, M. A. (2004) Trends Genet. 20, 464-467.
28. Deininger, P. L., Batzer, M. A., Hutchison, C. A., 3rd, & Edgell, M. H. (1992) Trends Genet. 8, 307-311.
29. Roy-Engel, A. M., Salem, A. H., Oyeniran, O. O., Deininger, L., Hedges, D. J., Kilroy, G. E., Batzer, M. A. & Deininger, P. L. (2002) Genome Res. 12, 1333-1344.
30. Lev-Maor, G., Sorek, R., Shomron, N. & Ast, G. (2003) Science 300, 1288-1291.