-
1
-
-
0034669882
-
Why are "natively unfolded" proteins unstructured under physiologic conditions?
-
Uversky, V. N., Gillespie, J. R., and Fink, A. L. (2000) Why are "natively unfolded" proteins unstructured under physiologic conditions? Proteins 41, 415-427.
-
(2000)
Proteins
, vol.41
, pp. 415-427
-
-
Uversky, V.N.1
Gillespie, J.R.2
Fink, A.L.3
-
2
-
-
0036291145
-
Predicting changes in the stability of proteins and protein complexes: A study of more than 1000 mutations
-
Guerois, R., Nielsen, J. E., and Serrano, L. (2002) Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations, J. Mol. Biol. 320, 369-387.
-
(2002)
J. Mol. Biol.
, vol.320
, pp. 369-387
-
-
Guerois, R.1
Nielsen, J.E.2
Serrano, L.3
-
3
-
-
0032708771
-
Mutational analysis of AcP suggests the importance of topology and contact order in protein folding
-
Chiti, F., Taddei, N., White, P. W., Bucciantini, M., Magherini, F., Stefani, M., and Dobson, C. M. (1999) Mutational analysis of AcP suggests the importance of topology and contact order in protein folding, Nat. Struct. Biol. 6, 1005-1010.
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 1005-1010
-
-
Chiti, F.1
Taddei, N.2
White, P.W.3
Bucciantini, M.4
Magherini, F.5
Stefani, M.6
Dobson, C.M.7
-
4
-
-
0034984382
-
Mapping the folding pathway of an immunoglobulin domain: Structural detail from Phi value analysis and movement of the transition state
-
Fowler, S. B., and Clarke, J. (2001) Mapping the folding pathway of an immunoglobulin domain: structural detail from Phi value analysis and movement of the transition state, Structure (Cambridge) 9, 355-366.
-
(2001)
Structure (Cambridge)
, vol.9
, pp. 355-366
-
-
Fowler, S.B.1
Clarke, J.2
-
5
-
-
0035252683
-
Mechanisms of protein folding
-
Grantcharova, V., Alm, E. J., Baker, D., and Horwich, A. L. (2001) Mechanisms of protein folding, Curr. Opin. Struct. Biol. 11, 70-82.
-
(2001)
Curr. Opin. Struct. Biol.
, vol.11
, pp. 70-82
-
-
Grantcharova, V.1
Alm, E.J.2
Baker, D.3
Horwich, A.L.4
-
6
-
-
0037423705
-
Structural analysis of the rate-limiting transition states in the folding of Im7 and Im9: Similarities and differences in the folding of homologous proteins
-
Friel, C. T., Capaldi, A. P., and Radford, S. E. (2003) Structural analysis of the rate-limiting transition states in the folding of Im7 and Im9: similarities and differences in the folding of homologous proteins, J. Mol. Biol. 326, 293-305.
-
(2003)
J. Mol. Biol.
, vol.326
, pp. 293-305
-
-
Friel, C.T.1
Capaldi, A.P.2
Radford, S.E.3
-
7
-
-
0034687123
-
Topology, stability, sequence, and length: Defining the determinants of two-state protein folding kinetics
-
Plaxco, K. W., Simons, K. T., Ruczinski, I., and Baker, D. (2000) Topology, stability, sequence, and length: defining the determinants of two-state protein folding kinetics, Biochemistry 39, 11177-11183.
-
(2000)
Biochemistry
, vol.39
, pp. 11177-11183
-
-
Plaxco, K.W.1
Simons, K.T.2
Ruczinski, I.3
Baker, D.4
-
8
-
-
0032491565
-
Slow folding of muscle acylphosphatase in the absence of intermediates
-
van Nuland, N. A. J., Chiti, F., Taddei, N., Raugei, G., Ramponi, G., and Dobson, C. M. (1998) Slow folding of muscle acylphosphatase in the absence of intermediates, J. Mol. Biol. 283, 883-891.
-
(1998)
J. Mol. Biol.
, vol.283
, pp. 883-891
-
-
Van Nuland, N.A.J.1
Chiti, F.2
Taddei, N.3
Raugei, G.4
Ramponi, G.5
Dobson, C.M.6
-
9
-
-
0033573838
-
Thermodynamics and kinetics of folding of common-type acylphosphatase: Comparison to the highly homologous muscle isoenzyme
-
Taddei, N., Chiti, F., Paoli, P., Fiaschi, T., Bucciantini, M., Stefani, M., Dobson, C. M., and Ramponi, G. (1999) Thermodynamics and kinetics of folding of common-type acylphosphatase: comparison to the highly homologous muscle isoenzyme, Biochemistry 38, 2135-2142.
-
(1999)
Biochemistry
, vol.38
, pp. 2135-2142
-
-
Taddei, N.1
Chiti, F.2
Paoli, P.3
Fiaschi, T.4
Bucciantini, M.5
Stefani, M.6
Dobson, C.M.7
Ramponi, G.8
-
10
-
-
0038047129
-
Comparison of the folding processes of distantly related proteins. Importance of hydrophobic content in folding
-
Calloni, G., Taddei, N., Plaxco, K. W., Ramponi, G., Stefani, M., and Chiti, F. (2003) Comparison of the folding processes of distantly related proteins. Importance of hydrophobic content in folding, J. Mol. Biol. 330, 577-591.
-
(2003)
J. Mol. Biol.
, vol.330
, pp. 577-591
-
-
Calloni, G.1
Taddei, N.2
Plaxco, K.W.3
Ramponi, G.4
Stefani, M.5
Chiti, F.6
-
11
-
-
0026522991
-
Three-dimensional structure of acylphosphatase. Refinement and structure analysis
-
Pastore, A., Saudek, V., Ramponi, G., and Williams, R. J. (1992) Three-dimensional structure of acylphosphatase. Refinement and structure analysis, J. Mol. Biol. 224, 427-440.
-
(1992)
J. Mol. Biol.
, vol.224
, pp. 427-440
-
-
Pastore, A.1
Saudek, V.2
Ramponi, G.3
Williams, R.J.4
-
12
-
-
0031568309
-
Crystal structure of common type acylphosphatase from bovine testis
-
Thunnissen, M. M., Taddei, N., Liguri, G., Ramponi, G., and Nordlund, P. (1997) Crystal structure of common type acylphosphatase from bovine testis, Structure 5, 69-79.
-
(1997)
Structure
, vol.5
, pp. 69-79
-
-
Thunnissen, M.M.1
Taddei, N.2
Liguri, G.3
Ramponi, G.4
Nordlund, P.5
-
13
-
-
0036382641
-
Crystal structure and anion binding in the prokaryotic hydrogenase maturation factor HypF acylphosphatase-like domain
-
Rosano, C., Zuccotti, S., Bucciantini, M., Stefani, M., Ramponi, G., and Bolognesi, M. (2002) Crystal structure and anion binding in the prokaryotic hydrogenase maturation factor HypF acylphosphatase-like domain, J. Mol. Biol. 321, 785-796.
-
(2002)
J. Mol. Biol.
, vol.321
, pp. 785-796
-
-
Rosano, C.1
Zuccotti, S.2
Bucciantini, M.3
Stefani, M.4
Ramponi, G.5
Bolognesi, M.6
-
14
-
-
0017123760
-
A new synthesis of benzoyl phosphate: A substrate for acyl phosphatase assay
-
Camici, G., Manao, G., Cappugi, G., and Ramponi, G. (1976). A new synthesis of benzoyl phosphate: a substrate for acyl phosphatase assay, Experientia 32, 535-536.
-
(1976)
Experientia
, vol.32
, pp. 535-536
-
-
Camici, G.1
Manao, G.2
Cappugi, G.3
Ramponi, G.4
-
15
-
-
0029953734
-
Looking for residues involved in the muscle acylphosphatase catalytic mechanism and structural stabilization: Role of Asn41, Thr42, and Thr46
-
Taddei, N., Stefani, M., Magherini, F., Chiti, F., Modesti, A., Raugei, G., and Ramponi, G. (1996) Looking for residues involved in the muscle acylphosphatase catalytic mechanism and structural stabilization: role of Asn41, Thr42, and Thr46, Biochemistry 35, 7077-7083.
-
(1996)
Biochemistry
, vol.35
, pp. 7077-7083
-
-
Taddei, N.1
Stefani, M.2
Magherini, F.3
Chiti, F.4
Modesti, A.5
Raugei, G.6
Ramponi, G.7
-
16
-
-
0023697408
-
Unfolding free-energy changes determined by the linear extrapolation method. 1. Unfolding of phenyl-methanesulfonyl alpha-chymotrypsin using different denaturants
-
Santoro, M. M., and Bolen, D. W. (1988) Unfolding free-energy changes determined by the linear extrapolation method. 1. Unfolding of phenyl-methanesulfonyl alpha-chymotrypsin using different denaturants, Biochemistry 27, 8063-8068.
-
(1988)
Biochemistry
, vol.27
, pp. 8063-8068
-
-
Santoro, M.M.1
Bolen, D.W.2
-
17
-
-
0013923439
-
Aromatic acyl phosphates as substrates of acyl phosphatase
-
Ramponi, G., Treves, C., and Guerritore, A. (1966) Aromatic acyl phosphates as substrates of acyl phosphatase, Arch. Biochem. Biophys. 115, 129-135.
-
(1966)
Arch. Biochem. Biophys.
, vol.115
, pp. 129-135
-
-
Ramponi, G.1
Treves, C.2
Guerritore, A.3
-
19
-
-
0025698613
-
Transient folding intermediates characterised by protein engineering
-
Matouschek, A., Kellis, J. T., Serrano, L., Bycroft, M., and Fersht, A. R. (1990) Transient folding intermediates characterised by protein engineering, Nature 346, 440-445.
-
(1990)
Nature
, vol.346
, pp. 440-445
-
-
Matouschek, A.1
Kellis, J.T.2
Serrano, L.3
Bycroft, M.4
Fersht, A.R.5
-
20
-
-
0030057477
-
Evidence for a three-state model of protein folding from kinetic analysis of ubiquitin variants with altered core residues
-
Khorasanizadeh, S., Peters, I. D., and Roder, H. (1996) Evidence for a three-state model of protein folding from kinetic analysis of ubiquitin variants with altered core residues, Nat. Struct. Biol. 3, 193-205.
-
(1996)
Nat. Struct. Biol.
, vol.3
, pp. 193-205
-
-
Khorasanizadeh, S.1
Peters, I.D.2
Roder, H.3
-
21
-
-
0030334834
-
Structure of the transition state for folding of the 129 aa protein CheY resembles that of a smaller protein, CI-2
-
Lopez-Hernandez, E., and Serrano, L. (1996) Structure of the transition state for folding of the 129 aa protein CheY resembles that of a smaller protein, CI-2, Folding Des. 1, 43-55.
-
(1996)
Folding Des.
, vol.1
, pp. 43-55
-
-
Lopez-Hernandez, E.1
Serrano, L.2
-
22
-
-
0031010678
-
Amide backbone and water-related H/D isotope effects on the dynamics of a protein folding reaction
-
Parker, M. J., and Clarke, A. R. (1997) Amide backbone and water-related H/D isotope effects on the dynamics of a protein folding reaction, Biochemistry 36, 5786-5794.
-
(1997)
Biochemistry
, vol.36
, pp. 5786-5794
-
-
Parker, M.J.1
Clarke, A.R.2
-
23
-
-
0033548553
-
Rapid folding with and without populated intermediates in the homologous four-helix proteins Im7 and Im9
-
Ferguson, N., Capaldi, A. P., James, R., Kleanthous, C., and Radford, S. (1999) Rapid folding with and without populated intermediates in the homologous four-helix proteins Im7 and Im9, J. Mol. Biol. 286, 1597-1608.
-
(1999)
J. Mol. Biol.
, vol.286
, pp. 1597-1608
-
-
Ferguson, N.1
Capaldi, A.P.2
James, R.3
Kleanthous, C.4
Radford, S.5
-
24
-
-
0030958760
-
Transient aggregates in protein folding are easily mistaken for folding intermediates
-
Silow, M., and Oliveberg, M. (1997) Transient aggregates in protein folding are easily mistaken for folding intermediates, Proc. Natl. Acad. Sci. U.S.A. 94, 6084-6046.
-
(1997)
Proc. Natl. Acad. Sci. U.S.A.
, vol.94
, pp. 6084-6046
-
-
Silow, M.1
Oliveberg, M.2
-
25
-
-
0037225280
-
Evidence for sequential barriers and obligatory intermediates in apparent two-state protein folding
-
Sanchez, I. E., and Kiefhaber, T. (2003) Evidence for sequential barriers and obligatory intermediates in apparent two-state protein folding, J. Mol. Biol. 325, 367-376.
-
(2003)
J. Mol. Biol.
, vol.325
, pp. 367-376
-
-
Sanchez, I.E.1
Kiefhaber, T.2
-
26
-
-
0029115374
-
Kinetics of interaction of partially folded proteins with a hydrophobic dye: Evidence that molten globule character is maximal in early folding intermediates
-
Engelhard, M., and Evans, P. A. (1995) Kinetics of interaction of partially folded proteins with a hydrophobic dye: evidence that molten globule character is maximal in early folding intermediates, Protein Sci. 4, 561-602.
-
(1995)
Protein Sci.
, vol.4
, pp. 561-602
-
-
Engelhard, M.1
Evans, P.A.2
-
27
-
-
0035715945
-
Prolyl isomerases
-
Schmid, F. X. (2001) Prolyl isomerases, Adv. Protein Chem. 59, 243-282.
-
(2001)
Adv. Protein Chem.
, vol.59
, pp. 243-282
-
-
Schmid, F.X.1
-
28
-
-
0023236959
-
Catalysis of protein folding by prolyl isomerase
-
Lang, K., Schmid, F. X., and Fischer, G. (1987) Catalysis of protein folding by prolyl isomerase, Nature 329, 268-270.
-
(1987)
Nature
, vol.329
, pp. 268-270
-
-
Lang, K.1
Schmid, F.X.2
Fischer, G.3
-
29
-
-
0032555373
-
Drosophila melanogaster acylphosphatase: A common ancestor for acylphosphatase isoenzymes of vertebrate species
-
Pieri, A., Magherini, F., Liguri, G., Raugei, G., Taddei, N., Bozzetti, M. P., Cecchi, C., and Ramponi, G. (1998) Drosophila melanogaster acylphosphatase: a common ancestor for acylphosphatase isoenzymes of vertebrate species, FEBS Lett. 433, 205-210.
-
(1998)
FEBS Lett.
, vol.433
, pp. 205-210
-
-
Pieri, A.1
Magherini, F.2
Liguri, G.3
Raugei, G.4
Taddei, N.5
Bozzetti, M.P.6
Cecchi, C.7
Ramponi, G.8
-
30
-
-
0037472736
-
Characterization of a novel Drosophila melanogaster acylphosphatase
-
Degl'Innocenti, D., Ramazzotti, M., Marzocchini, R., Chiti, F., Raugei, G., and Ramponi, G. (2003) Characterization of a novel Drosophila melanogaster acylphosphatase, FEBS Lett. 535, 171-174.,
-
(2003)
FEBS Lett
, vol.535
, pp. 171-174
-
-
Degl'Innocenti, D.1
Ramazzotti, M.2
Marzocchini, R.3
Chiti, F.4
Raugei, G.5
Ramponi, G.6
-
31
-
-
0032438190
-
The stability of proteins in extreme environments
-
Jaenicke, R., and Bohm, G. (1998) The stability of proteins in extreme environments, Curr. Opin. Struct. Biol. 8, 738-748.
-
(1998)
Curr. Opin. Struct. Biol.
, vol.8
, pp. 738-748
-
-
Jaenicke, R.1
Bohm, G.2
-
32
-
-
0035448574
-
Ion pairs and the thermotolerance of proteins from hyperthermophiles: A "traffic rule" for hot roads
-
Karshikoff, A., and Ladenstein, R. (2001) Ion pairs and the thermotolerance of proteins from hyperthermophiles: a "traffic rule" for hot roads, Trends Biochem. Sci. 26, 550-556.
-
(2001)
Trends Biochem. Sci.
, vol.26
, pp. 550-556
-
-
Karshikoff, A.1
Ladenstein, R.2
-
33
-
-
0031890195
-
Conservation of rapid two-state folding in mesophilic, thermophilic and hyperthermophilic cold shock proteins
-
Perl, D., Welker, C., Schindler, T., Schroder, K., Marahiel, M. A., Jaenicke, R., and Schmid, F. X. (1998) Conservation of rapid two-state folding in mesophilic, thermophilic and hyperthermophilic cold shock proteins, Nat. Struct. Biol. 5, 229-235.
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 229-235
-
-
Perl, D.1
Welker, C.2
Schindler, T.3
Schroder, K.4
Marahiel, M.A.5
Jaenicke, R.6
Schmid, F.X.7
-
34
-
-
0344301982
-
Protein folding: A perspective from theory & experiment
-
Dobson, C. M., Sali, A., and Karplus, M. (1998) Protein folding: A perspective from theory & experiment, Angew. Chem., Int. Ed. 37, 868-893.
-
(1998)
Angew. Chem., Int. Ed.
, vol.37
, pp. 868-893
-
-
Dobson, C.M.1
Sali, A.2
Karplus, M.3
-
35
-
-
0001579510
-
The molten globule state: The physical picture and biological significance
-
(Pain, R., Ed.), Oxford University Press, Oxford, U.K.
-
Kuwajima, K., and Arai, M. (2000) The molten globule state: the physical picture and biological significance, in Mechanism of protein folding (Pain, R., Ed.) pp 138-174, Oxford University Press, Oxford, U.K.
-
(2000)
Mechanism of Protein Folding
, pp. 138-174
-
-
Kuwajima, K.1
Arai, M.2
-
36
-
-
0037456298
-
The complete folding pathway of a protein from nanoseconds to microseconds
-
Mayor, U., Guydosh, N. R., Johnson, C. M., Grossmann, J. G., Sato, S., Jas, G. S., Freund, S. M., Alonso, D. O., Daggett, V., and Fersht, A. R. (2003) The complete folding pathway of a protein from nanoseconds to microseconds, Nature 421, 863-867.
-
(2003)
Nature
, vol.421
, pp. 863-867
-
-
Mayor, U.1
Guydosh, N.R.2
Johnson, C.M.3
Grossmann, J.G.4
Sato, S.5
Jas, G.S.6
Freund, S.M.7
Alonso, D.O.8
Daggett, V.9
Fersht, A.R.10
-
37
-
-
0037215268
-
The topomer search model: A simple, quantitative theory of two-state protein folding kinetics
-
Makarov, D. E., and Plaxco, K. W. (2003) The topomer search model: A simple, quantitative theory of two-state protein folding kinetics, Protein Sci. 12, 17-26.
-
(2003)
Protein Sci.
, vol.12
, pp. 17-26
-
-
Makarov, D.E.1
Plaxco, K.W.2
-
38
-
-
0035253197
-
Keeping in the family: Folding studies of related proteins
-
Gunasekaran, K., Eyles, S. J., Hagler, A. T., and Gierasch, L. M. (2001) Keeping in the family: folding studies of related proteins, Curr. Opin. Struct. Biol. 11, 83-93.
-
(2001)
Curr. Opin. Struct. Biol.
, vol.11
, pp. 83-93
-
-
Gunasekaran, K.1
Eyles, S.J.2
Hagler, A.T.3
Gierasch, L.M.4
-
39
-
-
0036172116
-
Hydrophobic core packing in the SH3 domain folding transition state
-
Northey, J. G., Di Nardo, A. A., and Davidson, A. R. (2002) Hydrophobic core packing in the SH3 domain folding transition state, Nat. Struct. Biol. 9, 126-130.
-
(2002)
Nat. Struct. Biol.
, vol.9
, pp. 126-130
-
-
Northey, J.G.1
Di Nardo, A.A.2
Davidson, A.R.3
-
40
-
-
0037117477
-
Unspecific hydrophobic stabilization of folding transition states
-
Viguera, A. R., Vega, C., and Serrano, L. (2002) Unspecific hydrophobic stabilization of folding transition states, Proc. Natl. Acad. Sci. U.S.A. 99, 5349-5354.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 5349-5354
-
-
Viguera, A.R.1
Vega, C.2
Serrano, L.3
-
41
-
-
0037453348
-
A thermodynamic and kinetic analysis of the folding pathway of an SH3 domain entropically stabilised by a redesigned hydrophobic core
-
Cobos, E. S., Filimonov, V. V., Vega, M. C., Mateo, P. L., Serrano, L., and Martinez, J. C. (2003). A thermodynamic and kinetic analysis of the folding pathway of an SH3 domain entropically stabilised by a redesigned hydrophobic core, J. Mol. Biol. 328, 221-233.
-
(2003)
J. Mol. Biol.
, vol.328
, pp. 221-233
-
-
Cobos, E.S.1
Filimonov, V.V.2
Vega, M.C.3
Mateo, P.L.4
Serrano, L.5
Martinez, J.C.6
-
42
-
-
0033575212
-
Development of enzymatic activity during protein folding
-
Chiti, F., Taddei, N., Giannoni, E., van Nuland, N. A. J., Ramponi, G., and Dobson, C. M. (1999) Development of enzymatic activity during protein folding, J. Biol. Chem. 29, 20151-20158.
-
(1999)
J. Biol. Chem.
, vol.29
, pp. 20151-20158
-
-
Chiti, F.1
Taddei, N.2
Giannoni, E.3
Van Nuland, N.A.J.4
Ramponi, G.5
Dobson, C.M.6
-
43
-
-
0036295079
-
Comparison of the folding processes of T. thermophilus and E. coli ribonucleases H
-
Hollien, J., and Marqusee, S. (2002) Comparison of the folding processes of T. thermophilus and E. coli ribonucleases H, J. Mol. Biol. 316, 327-340.
-
(2002)
J. Mol. Biol.
, vol.316
, pp. 327-340
-
-
Hollien, J.1
Marqusee, S.2
-
44
-
-
0037040541
-
Molecular chaperones in the cytosol: From nascent chain to folded protein
-
Hartl, F. U., and Hayer-Hartl, M. (2002) Molecular chaperones in the cytosol: from nascent chain to folded protein, Science 295, 1852-1858.
-
(2002)
Science
, vol.295
, pp. 1852-1858
-
-
Hartl, F.U.1
Hayer-Hartl, M.2
-
45
-
-
0036295887
-
Residues participating in the protein folding nucleus do not exhibit preferential evolutionary conservation
-
Larson, S. M., Ruczinski, I., Davidson, A. R., Baker, D., and Plaxco, K. W. (2002). Residues participating in the protein folding nucleus do not exhibit preferential evolutionary conservation, J. Mol. Biol. 316, 225-233.
-
(2002)
J. Mol. Biol.
, vol.316
, pp. 225-233
-
-
Larson, S.M.1
Ruczinski, I.2
Davidson, A.R.3
Baker, D.4
Plaxco, K.W.5
-
47
-
-
0032553332
-
Elucidating the folding problem of a-helices: Local motifs, long-range electrostatics, ionic strength dependence and prediction of NMR parameters
-
Lacroix, E., Viguera, A. R., and Serrano, L. (1998) Elucidating the folding problem of a-helices: Local motifs, long-range electrostatics, ionic strength dependence and prediction of NMR parameters, J. Mol. Biol. 284, 173-191.
-
(1998)
J. Mol. Biol.
, vol.284
, pp. 173-191
-
-
Lacroix, E.1
Viguera, A.R.2
Serrano, L.3
|