-
1
-
-
0036651767
-
The stringent response genes relA and spoT are important for Escherichia coli biofilms under slow-growth conditions
-
Balzer, G. J., and McLean, R. J. (2002) The stringent response genes relA and spoT are important for Escherichia coli biofilms under slow-growth conditions, Can. J. Microbiol. 48, 675-680.
-
(2002)
Can. J. Microbiol.
, vol.48
, pp. 675-680
-
-
Balzer, G.J.1
McLean, R.J.2
-
2
-
-
2042475439
-
Structural basis for transcription regulation by alarmone ppGpp
-
Artsimovitch, I., Patlan, V., Sekine, S., Vassylyeva, M. N., Hosaka, T., Ochi, K., Yokoyama, S., and Vassylyev, D. G. (2004) Structural basis for transcription regulation by alarmone ppGpp, Cell 117, 299-310.
-
(2004)
Cell
, vol.117
, pp. 299-310
-
-
Artsimovitch, I.1
Patlan, V.2
Sekine, S.3
Vassylyeva, M.N.4
Hosaka, T.5
Ochi, K.6
Yokoyama, S.7
Vassylyev, D.G.8
-
3
-
-
0035958643
-
Cell biology. Surviving starvation
-
Gottesman, S., and Maurizi, M. R. (2001) Cell biology. Surviving starvation, Science 293, 614-615.
-
(2001)
Science
, vol.293
, pp. 614-615
-
-
Gottesman, S.1
Maurizi, M.R.2
-
4
-
-
0035958678
-
Role of inorganic polyphosphate in promoting ribosomal protein degradation by the Lon protease in E. coli
-
Kuroda, A., Nomura, K., Ohtomo, R., Kato, J., Ikeda, T., Takiguchi, N., Ohtake, H., and Komberg, A. (2001) Role of inorganic polyphosphate in promoting ribosomal protein degradation by the Lon protease in E. coli, Science 293, 705-708.
-
(2001)
Science
, vol.293
, pp. 705-708
-
-
Kuroda, A.1
Nomura, K.2
Ohtomo, R.3
Kato, J.4
Ikeda, T.5
Takiguchi, N.6
Ohtake, H.7
Komberg, A.8
-
5
-
-
0017757724
-
Synthesis of guanosine polyphosphates (pppGpp and ppGpp) and its regulation by aminoacyl-tRNA
-
Ogawa, Y., and Sy, J. (1977) Synthesis of guanosine polyphosphates (pppGpp and ppGpp) and its regulation by aminoacyl-tRNA, J. Biochem. (Tokyo) 82, 947-953.
-
(1977)
J. Biochem. (Tokyo)
, vol.82
, pp. 947-953
-
-
Ogawa, Y.1
Sy, J.2
-
6
-
-
0036809217
-
Dissection of the mechanism for the stringent factor RelA
-
Wendrich, T. M., Blaha, G., Wilson, D. N., Marahiel, M. A., and Nierhaus, K. H. (2002) Dissection of the mechanism for the stringent factor RelA, Mol. Cell 10, 779-788.
-
(2002)
Mol. Cell
, vol.10
, pp. 779-788
-
-
Wendrich, T.M.1
Blaha, G.2
Wilson, D.N.3
Marahiel, M.A.4
Nierhaus, K.H.5
-
7
-
-
1842766260
-
Conformational antagonism between opposing active sites in a bifunctional RelA/SpoT homologue modulates (p)ppGpp metabolism during the stringent response
-
Hogg, T., Mechold, U., Malke, H., Cashel, M., and Hilgenfeld, R. (2004) Conformational antagonism between opposing active sites in a bifunctional RelA/SpoT homologue modulates (p)ppGpp metabolism during the stringent response, Cell 117, 57-68.
-
(2004)
Cell
, vol.117
, pp. 57-68
-
-
Hogg, T.1
Mechold, U.2
Malke, H.3
Cashel, M.4
Hilgenfeld, R.5
-
8
-
-
0035150018
-
Regulation of Escherichia coli RelA requires oligomerization of the C-terminal domain
-
Gropp, M., Strausz, Y., Gross, M., and Glaser, G. (2001) Regulation of Escherichia coli RelA requires oligomerization of the C-terminal domain, J. Bacteriol. 183, 570-579.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 570-579
-
-
Gropp, M.1
Strausz, Y.2
Gross, M.3
Glaser, G.4
-
9
-
-
0027219719
-
Guanosine pentaphosphate phosphohydrolase of Escherichia coli is a long-chain exopolyphosphatase
-
Keasling, J. D., Bertsch, L., and Komberg, A. (1993) Guanosine pentaphosphate phosphohydrolase of Escherichia coli is a long-chain exopolyphosphatase, Proc. Natl. Acad. Sci. U.S.A. 90, 7029-7033.
-
(1993)
Proc. Natl. Acad. Sci. U.S.A.
, vol.90
, pp. 7029-7033
-
-
Keasling, J.D.1
Bertsch, L.2
Komberg, A.3
-
10
-
-
0030771435
-
Guanosine tetra- and pentaphosphate promote accumulation of inorganic polyphosphate in Escherichia coli
-
Kuroda, A., Murphy, H., Cashel, M., and Komberg, A. (1997) Guanosine tetra- and pentaphosphate promote accumulation of inorganic polyphosphate in Escherichia coli, J. Biol. Chem. 272, 21240-21243.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 21240-21243
-
-
Kuroda, A.1
Murphy, H.2
Cashel, M.3
Komberg, A.4
-
11
-
-
0032568375
-
The complete genome of the hyperthermophilic bacterium Aquifex aeolicus
-
Deckert, G., Warren, P. V., Gaasterland, T., Young, W. G., Lenox, A. L., Graham, D. E., Overbeek, R., Snead, M. A., Keller, M., Aujay, M., Huber, R., Feldman, R. A., Short, J. M., Olsen, G. J., and Swanson, R. V. (1998) The complete genome of the hyperthermophilic bacterium Aquifex aeolicus, Nature 392, 353-358.
-
(1998)
Nature
, vol.392
, pp. 353-358
-
-
Deckert, G.1
Warren, P.V.2
Gaasterland, T.3
Young, W.G.4
Lenox, A.L.5
Graham, D.E.6
Overbeek, R.7
Snead, M.A.8
Keller, M.9
Aujay, M.10
Huber, R.11
Feldman, R.A.12
Short, J.M.13
Olsen, G.J.14
Swanson, R.V.15
-
12
-
-
0037168609
-
A polyphosphate kinase (PPK2) widely conserved in bacteria
-
Zhang, H., Ishige, K., and Komberg, A. (2002) A polyphosphate kinase (PPK2) widely conserved in bacteria, Proc. Natl. Acad. Sci. U.S.A. 99, 16678-16683.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 16678-16683
-
-
Zhang, H.1
Ishige, K.2
Komberg, A.3
-
13
-
-
0035997134
-
Crystallization of a stringent response factor from Aquifex aeolicus
-
Kristensen, O., Laurberg, M., and Gajhede, M. (2002) Crystallization of a stringent response factor from Aquifex aeolicus, Acta Crystallogr., Sect. D: Biol. Crystallogr. 58, 1198-1200.
-
(2002)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.58
, pp. 1198-1200
-
-
Kristensen, O.1
Laurberg, M.2
Gajhede, M.3
-
14
-
-
0027439390
-
Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin
-
Van Duyne, G. D., Standaert, R. F., Karplus, P. A., Schreiber, S. L., and Clardy, J. (1993) Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin, J. Mol. Biol. 229, 105-124.
-
(1993)
J. Mol. Biol.
, vol.229
, pp. 105-124
-
-
Van Duyne, G.D.1
Standaert, R.F.2
Karplus, P.A.3
Schreiber, S.L.4
Clardy, J.5
-
15
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Collaborative Computational Project No. 4 (1994) The CCP4 suite: Programs for protein crystallography, Acta Crystallogr., Sect. D: Biol. Crystallogr. 50, 760-763.
-
(1994)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.50
, pp. 760-763
-
-
-
16
-
-
0033119895
-
Automated MAD and MIR structure solution
-
Terwilliger, T. C., and Berendzen, J. (1999) Automated MAD and MIR structure solution, Acta Crystallogr., Sect. D: Biol. Crystallogr. 55 (Pt 4), 849-861.
-
(1999)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.55
, Issue.PART 4
, pp. 849-861
-
-
Terwilliger, T.C.1
Berendzen, J.2
-
17
-
-
0031058188
-
Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods
-
Fortelle, E. D. L., and Bricogne, G. (1997) Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods, Methods Enzymol. Macromol. Crystallogr. Part A 276, 472-494.
-
(1997)
Methods Enzymol. Macromol. Crystallogr. Part A
, vol.276
, pp. 472-494
-
-
Fortelle, E.D.L.1
Bricogne, G.2
-
18
-
-
0005797141
-
The ARP/wARP suite for automated construction and refinement of protein models
-
Lamzin, V. S., Perrakis, A., and Wilson, K. S. (2001) The ARP/wARP suite for automated construction and refinement of protein models, Int. Tables Crystallogr. F, 720-722.
-
(2001)
Int. Tables Crystallogr. F
, pp. 720-722
-
-
Lamzin, V.S.1
Perrakis, A.2
Wilson, K.S.3
-
19
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Crystallography & NMR system: A new software suite for macromolecular structure determination, Acta Crystallogr., Sect. D: Biol. Crystallogr. 54 (Pt 5), 905-921.
-
(1998)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.54
, Issue.PART 5
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
20
-
-
0032212015
-
Incorporation of prior phase information strengthens maximum-likelihood structure refinement
-
Pannu, N. S., Murshudov, G. N., Dodson, E. J., and Read, R. J. (1998) Incorporation of prior phase information strengthens maximum-likelihood structure refinement, Acta Crystallogr., Sect. D: Biol. Crystallogr. 54, 1285-1294.
-
(1998)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.54
, pp. 1285-1294
-
-
Pannu, N.S.1
Murshudov, G.N.2
Dodson, E.J.3
Read, R.J.4
-
21
-
-
0026244229
-
MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
-
Kraulis, P. J. (1991) MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures, J. Appl. Crystallogr. 24, 946-950.
-
(1991)
J. Appl. Crystallogr.
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
22
-
-
0030815133
-
Raster3D: Photorealistic molecular graphics
-
Merritt, E. A., and Bacon, D. J. (1997) Raster3D: Photorealistic molecular graphics, Methods Enzymol. 277, 505-524.
-
(1997)
Methods Enzymol.
, vol.277
, pp. 505-524
-
-
Merritt, E.A.1
Bacon, D.J.2
-
23
-
-
0027412196
-
ALSCRIPT: A tool to format multiple sequence alignments
-
Barton, G. J. (1993) ALSCRIPT: A tool to format multiple sequence alignments, Protein Eng. 6, 37-40.
-
(1993)
Protein Eng.
, vol.6
, pp. 37-40
-
-
Barton, G.J.1
-
24
-
-
0030824517
-
Ribbons
-
Carson, M. (1997) Ribbons, Methods Enzymol. 277, 493-505.
-
(1997)
Methods Enzymol.
, vol.277
, pp. 493-505
-
-
Carson, M.1
-
25
-
-
0012293235
-
-
DeLano Scientific, San Carlos, CA
-
DeLano, W. L. (2002) PyMol, DeLano Scientific, San Carlos, CA.
-
(2002)
PyMol
-
-
DeLano, W.L.1
-
26
-
-
0027159053
-
Exopolyphosphate phosphatase and guanosine pentaphosphate phosphatase belong to the sugar kinase/actin/hsp 70 superfamily
-
Reizer, J., Reizer, A., Saier, M. H., Jr., Bork, P., and Sander, C. (1993) Exopolyphosphate phosphatase and guanosine pentaphosphate phosphatase belong to the sugar kinase/actin/hsp 70 superfamily, Trends Biochem. Sci. 18, 247-248.
-
(1993)
Trends Biochem. Sci.
, vol.18
, pp. 247-248
-
-
Reizer, J.1
Reizer, A.2
Saier Jr., M.H.3
Bork, P.4
Sander, C.5
-
27
-
-
0036795819
-
The exopolyphosphatase gene from Sulfolobus solfataricus: Characterization of the first gene found to be involved in polyphosphate metabolism in Archaea
-
Cardona, S. T., Chavez, F. P., and Jerez, C. A. (2002) The exopolyphosphatase gene from Sulfolobus solfataricus: Characterization of the first gene found to be involved in polyphosphate metabolism in Archaea, Appl. Environ. Microbiol. 68, 4812-4819.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 4812-4819
-
-
Cardona, S.T.1
Chavez, F.P.2
Jerez, C.A.3
-
28
-
-
0035909233
-
ATPase activity and conformational changes in the regulation of actin
-
Schuler, H. (2001) ATPase activity and conformational changes in the regulation of actin, Biochim. Biophys. Acta 1549, 137-147.
-
(2001)
Biochim. Biophys. Acta
, vol.1549
, pp. 137-147
-
-
Schuler, H.1
-
29
-
-
9144257886
-
The Pfam protein families database
-
database issue
-
Bateman, A., Coin, L., Durbin, R., Finn, R. D., Hollich, V., Griffiths-Jones, S., Khanna, A., Marshall, M., Moxon, S., Sonnhammer, E. L., Studholme, D. J., Yeats, C., and Eddy, S. R. (2004) The Pfam protein families database, Nucleic Acids Res. 32, D138-D141 (database issue).
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Bateman, A.1
Coin, L.2
Durbin, R.3
Finn, R.D.4
Hollich, V.5
Griffiths-Jones, S.6
Khanna, A.7
Marshall, M.8
Moxon, S.9
Sonnhammer, E.L.10
Studholme, D.J.11
Yeats, C.12
Eddy, S.R.13
-
30
-
-
0024988375
-
Protein database searches for multiple alignments
-
Altschul, S. F., and Lipman, D. J. (1990) Protein database searches for multiple alignments, Proc. Natl. Acad. Sci. U.S.A. 87, 5509-5513.
-
(1990)
Proc. Natl. Acad. Sci. U.S.A.
, vol.87
, pp. 5509-5513
-
-
Altschul, S.F.1
Lipman, D.J.2
-
31
-
-
0027440362
-
Protein structure comparison by alignment of distance matrices
-
Holm, L., and Sander, C. (1993) Protein structure comparison by alignment of distance matrices, J. Mol. Biol. 233, 123-138.
-
(1993)
J. Mol. Biol.
, vol.233
, pp. 123-138
-
-
Holm, L.1
Sander, C.2
-
32
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin, A. G., Brenner, S. E., Hubbard, T., and Chothia, C. (1995) SCOP: A structural classification of proteins database for the investigation of sequences and structures, J. Mol. Biol. 247, 536-540.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
33
-
-
0037610737
-
The structure of nonvertebrate actin: Implications for the ATP hydrolytic mechanism
-
Vorobiev, S., Strokopytov, B., Drubin, D. G., Frieden, C., Ono, S., Condeelis, J., Rubenstein, P. A., and Almo, S. C. (2003) The structure of nonvertebrate actin: Implications for the ATP hydrolytic mechanism, Proc. Natl. Acad. Sci. U.S.A. 100, 5760-5765.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 5760-5765
-
-
Vorobiev, S.1
Strokopytov, B.2
Drubin, D.G.3
Frieden, C.4
Ono, S.5
Condeelis, J.6
Rubenstein, P.A.7
Almo, S.C.8
-
34
-
-
0030575783
-
The structure of an open state of beta-actin at 2.65 Å resolution
-
Chik, J. K., Lindberg, U., and Schutt, C. E. (1996) The structure of an open state of beta-actin at 2.65 Å resolution, J. Mol. Biol. 263, 607-623.
-
(1996)
J. Mol. Biol.
, vol.263
, pp. 607-623
-
-
Chik, J.K.1
Lindberg, U.2
Schutt, C.E.3
-
35
-
-
0037428457
-
Structure of an F-actin trimer disrupted by gelsolin and implications for the mechanism of severing
-
Dawson, J. F., Sablin, E. P., Spudich, J. A., and Fletterick, R. J. (2003) Structure of an F-actin trimer disrupted by gelsolin and implications for the mechanism of severing, J. Biol. Chem. 278, 1229-1238.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 1229-1238
-
-
Dawson, J.F.1
Sablin, E.P.2
Spudich, J.A.3
Fletterick, R.J.4
-
36
-
-
0141445972
-
Crystal structure of monomeric actin in the ATP state. Structural basis of nucleotide-dependent actin dynamics
-
Graceffa, P., and Dominguez, R. (2003) Crystal structure of monomeric actin in the ATP state. Structural basis of nucleotide-dependent actin dynamics, J. Biol. Chem. 278, 34172-34180.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 34172-34180
-
-
Graceffa, P.1
Dominguez, R.2
-
37
-
-
0034675921
-
Crystal structure of the cell division protein FtsA from Thermotoga maritima
-
van den Ent, F., and Lowe, J. (2000) Crystal structure of the cell division protein FtsA from Thermotoga maritima, EMBO J. 19, 5300-5307.
-
(2000)
EMBO J.
, vol.19
, pp. 5300-5307
-
-
Van Den Ent, F.1
Lowe, J.2
-
38
-
-
0035817819
-
Prokaryotic origin of the actin cytoskeleton
-
van den Ent, F., Amos, L. A., and Lowe, J. (2001) Prokaryotic origin of the actin cytoskeleton, Nature 413, 39-44.
-
(2001)
Nature
, vol.413
, pp. 39-44
-
-
Van Den Ent, F.1
Amos, L.A.2
Lowe, J.3
-
39
-
-
12244298896
-
F-actin-like filaments formed by plasmid segregation protein ParM
-
van den Ent, F., Moller-Jensen, J., Amos, L. A., Gerdes, K., and Lowe, J. (2002) F-actin-like filaments formed by plasmid segregation protein ParM, EMBO J. 21, 6935-6943.
-
(2002)
EMBO J.
, vol.21
, pp. 6935-6943
-
-
Van Den Ent, F.1
Moller-Jensen, J.2
Amos, L.A.3
Gerdes, K.4
Lowe, J.5
-
40
-
-
0033136014
-
Structure of a new crystal form of human Hsp70 ATPase domain
-
Osipiuk, J., Walsh, M. A., Freeman, B. C., Morimoto, R. I., and Joachimiak, A. (1999) Structure of a new crystal form of human Hsp70 ATPase domain, Acta Crystallogr., Sect. D: Biol. Crystallogr. 55, 1105-1107.
-
(1999)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.55
, pp. 1105-1107
-
-
Osipiuk, J.1
Walsh, M.A.2
Freeman, B.C.3
Morimoto, R.I.4
Joachimiak, A.5
-
41
-
-
0028938819
-
How potassium affects the activity of the molecular chaperone Hsc70. II. Potassium binds specifically in the ATPase active site
-
Wilbanks, S. M., and McKay, D. B. (1995) How potassium affects the activity of the molecular chaperone Hsc70. II. Potassium binds specifically in the ATPase active site, J. Biol. Chem. 270, 2251-2257.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 2251-2257
-
-
Wilbanks, S.M.1
McKay, D.B.2
-
42
-
-
0035896031
-
Crystal structure of the Acidaminococcus fermentans 2-hydroxyglutaryl-CoA dehydratase component A
-
Locher, K. P., Hans, M., Yeh, A. P., Schmid, B., Buckel, W., and Rees, D. C. (2001) Crystal structure of the Acidaminococcus fermentans 2-hydroxyglutaryl-CoA dehydratase component A, J. Mol. Biol. 307, 297-308.
-
(2001)
J. Mol. Biol.
, vol.307
, pp. 297-308
-
-
Locher, K.P.1
Hans, M.2
Yeh, A.P.3
Schmid, B.4
Buckel, W.5
Rees, D.C.6
-
43
-
-
0035158122
-
Urkinase: Structure of acetate kinase, a member of the ASKHA superfamily of phosphotransferases
-
Buss, K. A., Cooper, D. R., Ingram-Smith, C., Ferry, J. G., Sanders, D. A., and Hasson, M. S. (2001) Urkinase: Structure of acetate kinase, a member of the ASKHA superfamily of phosphotransferases, J. Bacteriol. 183, 680-686.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 680-686
-
-
Buss, K.A.1
Cooper, D.R.2
Ingram-Smith, C.3
Ferry, J.G.4
Sanders, D.A.5
Hasson, M.S.6
-
44
-
-
0037225353
-
Structure of glycerol dehydratase reactivase: A new type of molecular chaperone
-
Liao, D. I., Reiss, L., Turner, I., and Dotson, G. (2003) Structure of glycerol dehydratase reactivase: A new type of molecular chaperone, Structure (Cambridge) 11, 109-119.
-
(2003)
Structure (Cambridge)
, vol.11
, pp. 109-119
-
-
Liao, D.I.1
Reiss, L.2
Turner, I.3
Dotson, G.4
-
45
-
-
0031869504
-
The structure of mammalian hexokinase-1
-
Mulichak, A. M., Wilson, J. E., Padmanabhan, K., and Garavito, R. M. (1998) The structure of mammalian hexokinase-1, Nat. Struct. Biol. 5, 555-560.
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 555-560
-
-
Mulichak, A.M.1
Wilson, J.E.2
Padmanabhan, K.3
Garavito, R.M.4
-
46
-
-
0034598953
-
Crystal structures of mutant monomeric hexokinase I reveal multiple ADP binding sites and conformational changes relevant to allosteric regulation
-
Aleshin, A. E., Kirby, C., Liu, X., Bourenkov, G. P., Bartunik, H. D., Fromm, H. J., and Honzatko, R. B. (2000) Crystal structures of mutant monomeric hexokinase I reveal multiple ADP binding sites and conformational changes relevant to allosteric regulation, J. Mol. Biol. 296, 1001-1015.
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 1001-1015
-
-
Aleshin, A.E.1
Kirby, C.2
Liu, X.3
Bourenkov, G.P.4
Bartunik, H.D.5
Fromm, H.J.6
Honzatko, R.B.7
-
47
-
-
0033571093
-
Binding of noncatalytic ATP to human hexokinase I highlights the structural components for enzyme-membrane association control
-
Rosano, C., Sabini, E., Rizzi, M., Deriu, D., Murshudov, G., Bianchi, M., Serafini, G., Magnani, M., and Bolognesi, M. (1999) Binding of noncatalytic ATP to human hexokinase I highlights the structural components for enzyme-membrane association control, Struct. Fold. Des. 7, 1427-1437.
-
(1999)
Struct. Fold. Des.
, vol.7
, pp. 1427-1437
-
-
Rosano, C.1
Sabini, E.2
Rizzi, M.3
Deriu, D.4
Murshudov, G.5
Bianchi, M.6
Serafini, G.7
Magnani, M.8
Bolognesi, M.9
-
48
-
-
0027459485
-
Structure of the regulatory complex of Escherichia coli IIIGlc with glycerol kinase
-
Hurley, J. H., Faber, H. R., Worthylake, D., Meadow, N. D., Roseman, S., Pettigrew, D. W., and Remington, S. J. (1993) Structure of the regulatory complex of Escherichia coli IIIGlc with glycerol kinase, Science 259, 673-677.
-
(1993)
Science
, vol.259
, pp. 673-677
-
-
Hurley, J.H.1
Faber, H.R.2
Worthylake, D.3
Meadow, N.D.4
Roseman, S.5
Pettigrew, D.W.6
Remington, S.J.7
-
49
-
-
0026687729
-
An ATPase domain common to prokaryotic cell cycle proteins, sugar kinases, actin, and hsp70 heat shock proteins
-
Bork, P., Sander, C., and Valencia, A. (1992) An ATPase domain common to prokaryotic cell cycle proteins, sugar kinases, actin, and hsp70 heat shock proteins, Proc. Natl. Acad. Sci. U.S.A. 89, 7290-7294.
-
(1992)
Proc. Natl. Acad. Sci. U.S.A.
, vol.89
, pp. 7290-7294
-
-
Bork, P.1
Sander, C.2
Valencia, A.3
-
50
-
-
0034479757
-
TOP: A new method for protein structure comparisons and similarity searches
-
Lu, G. (2000) TOP: A new method for protein structure comparisons and similarity searches, J. Appl. Crystallogr. 33, 176-183.
-
(2000)
J. Appl. Crystallogr.
, vol.33
, pp. 176-183
-
-
Lu, G.1
-
51
-
-
0018593773
-
Regulatory nucleotides involved in the Rel function of Bacillus subtilis
-
Nishino, T., Gallant, J., Shalit, P., Palmer, L., and Wehr, T. (1979) Regulatory nucleotides involved in the Rel function of Bacillus subtilis, J. Bacteriol. 140, 671-679.
-
(1979)
J. Bacteriol.
, vol.140
, pp. 671-679
-
-
Nishino, T.1
Gallant, J.2
Shalit, P.3
Palmer, L.4
Wehr, T.5
-
52
-
-
0036295212
-
Classification and evolution of P-loop GTPases and related ATPases
-
Leipe, D. D., Wolf, Y. I., Koonin, E. V., and Aravind, L. (2002) Classification and evolution of P-loop GTPases and related ATPases, J. Mol. Biol. 317, 41-72.
-
(2002)
J. Mol. Biol.
, vol.317
, pp. 41-72
-
-
Leipe, D.D.1
Wolf, Y.I.2
Koonin, E.V.3
Aravind, L.4
-
53
-
-
0027439691
-
An exopolyphosphatase of Escherichia coli. The enzyme and its ppx gene in a polyphosphate operon
-
Akiyama, M., Crooke, E., and Komberg, A. (1993) An exopolyphosphatase of Escherichia coli. The enzyme and its ppx gene in a polyphosphate operon, J. Biol. Chem. 268, 633-639.
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 633-639
-
-
Akiyama, M.1
Crooke, E.2
Komberg, A.3
-
54
-
-
0021099181
-
Guanosine 5′-triphosphate, 3′-diphosphate 5′-phosphohydrolase. Purification and substrate specificity
-
Hara, A., and Sy, J. (1983) Guanosine 5′-triphosphate, 3′-diphosphate 5′-phosphohydrolase. Purification and substrate specificity, J. Biol. Chem. 258, 1678-1683.
-
(1983)
J. Biol. Chem.
, vol.258
, pp. 1678-1683
-
-
Hara, A.1
Sy, J.2
-
55
-
-
0026409654
-
Calcium-binding sites in proteins: A structural perspective
-
McPhalen, C. A., Strynadka, N. C., and James, M. N. (1991) Calcium-binding sites in proteins: A structural perspective, Adv. Protein Chem. 42, 77-144.
-
(1991)
Adv. Protein Chem.
, vol.42
, pp. 77-144
-
-
McPhalen, C.A.1
Strynadka, N.C.2
James, M.N.3
-
56
-
-
0031016185
-
Structural mapping of the catalytic mechanism for a mammalian phosphoinositide-specific phospholipase C
-
Essen, L. O., Perisic, O., Katan, M., Wu, Y., Roberts, M. F., and Williams, R. L. (1997) Structural mapping of the catalytic mechanism for a mammalian phosphoinositide-specific phospholipase C, Biochemistry 36, 1704-1718.
-
(1997)
Biochemistry
, vol.36
, pp. 1704-1718
-
-
Essen, L.O.1
Perisic, O.2
Katan, M.3
Wu, Y.4
Roberts, M.F.5
Williams, R.L.6
-
57
-
-
0036040533
-
Conformational changes during the catalytic cycle of gluconate kinase as revealed by X-ray crystallography
-
Kraft, L., Sprenger, G. A., and Lindqvist, Y. (2002) Conformational changes during the catalytic cycle of gluconate kinase as revealed by X-ray crystallography, J. Mol. Biol. 318, 1057-1069.
-
(2002)
J. Mol. Biol.
, vol.318
, pp. 1057-1069
-
-
Kraft, L.1
Sprenger, G.A.2
Lindqvist, Y.3
-
58
-
-
0034701056
-
Mutational, kinetic, and NMR studies of the roles of conserved glutamate residues and of lysine-39 in the mechanism of the MutT pyrophosphohydrolase
-
Harris, T. K., Wu, G., Massiah, M. A., and Mildvan, A. S. (2000) Mutational, kinetic, and NMR studies of the roles of conserved glutamate residues and of lysine-39 in the mechanism of the MutT pyrophosphohydrolase, Biochemistry 39, 1655-1674.
-
(2000)
Biochemistry
, vol.39
, pp. 1655-1674
-
-
Harris, T.K.1
Wu, G.2
Massiah, M.A.3
Mildvan, A.S.4
-
59
-
-
0037462808
-
High resolution crystal structures of human Rab5a and five mutants with substitutions in the catalytically important phosphate-binding loop
-
Zhu, G., Liu, J., Terzyan, S., Zhai, P., Li, G., and Zhang, X. C. (2003) High resolution crystal structures of human Rab5a and five mutants with substitutions in the catalytically important phosphate-binding loop, J. Biol. Chem. 278, 2452-2460.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 2452-2460
-
-
Zhu, G.1
Liu, J.2
Terzyan, S.3
Zhai, P.4
Li, G.5
Zhang, X.C.6
-
60
-
-
0342504193
-
Mutational analysis of Ser14 and Asp157 in the nucleotide-binding site of beta-actin
-
Schuler, H., Korenbaum, E., Schutt, C. E., Lindberg, U., and Karlsson, R. (1999) Mutational analysis of Ser14 and Asp157 in the nucleotide-binding site of beta-actin, Eur. J. Biochem. 265, 210-220.
-
(1999)
Eur. J. Biochem.
, vol.265
, pp. 210-220
-
-
Schuler, H.1
Korenbaum, E.2
Schutt, C.E.3
Lindberg, U.4
Karlsson, R.5
-
61
-
-
0033601126
-
His(73), often methylated, is an important structural determinant for actin. A mutagenic analysis of HIS(73) of yeast actin
-
Yao, X., Grade, S., Wriggers, W., and Rubenstein, P. A. (1999) His(73), often methylated, is an important structural determinant for actin. A mutagenic analysis of HIS(73) of yeast actin, J. Biol. Chem. 274, 37443-37449.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 37443-37449
-
-
Yao, X.1
Grade, S.2
Wriggers, W.3
Rubenstein, P.A.4
-
62
-
-
0038611010
-
High-resolution structure of RNase P protein from Thermotoga maritima
-
Kazantsev, A. V., Krivenko, A. A., Harrington, D. J., Carter, R. J., Holbrook, S. R., Adams, P. D., and Pace, N. R. (2003) High-resolution structure of RNase P protein from Thermotoga maritima, Proc. Natl. Acad. Sci. U.S.A. 100, 7497-7502.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 7497-7502
-
-
Kazantsev, A.V.1
Krivenko, A.A.2
Harrington, D.J.3
Carter, R.J.4
Holbrook, S.R.5
Adams, P.D.6
Pace, N.R.7
-
63
-
-
0029182369
-
A ribosomal protein module in EF-G and DNA gyrase
-
Murzin, A. G. (1995) A ribosomal protein module in EF-G and DNA gyrase, Nat. Struct. Biol. 2, 25-26.
-
(1995)
Nat. Struct. Biol.
, vol.2
, pp. 25-26
-
-
Murzin, A.G.1
-
64
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) PROCHECK: A program to check the stereochemical quality of protein structures, J. Appl. Cryst. 26, 283-291.
-
(1993)
J. Appl. Cryst.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
65
-
-
0032006209
-
Systematic analysis of domain motions in proteins from conformational change: New results on citrate synthase and T4 lysozyme
-
Hayward, S., and Berendsen, H. J. (1998) Systematic analysis of domain motions in proteins from conformational change: New results on citrate synthase and T4 lysozyme, Proteins 30, 144-154.
-
(1998)
Proteins
, vol.30
, pp. 144-154
-
-
Hayward, S.1
Berendsen, H.J.2
-
66
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice, Nucleic Acids Res. 22, 4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
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