High-resolution structure of RNase P protein from Thermotoga maritima

Proceedings of the National Academy of Sciences of the United States of America

Volumn 100, Issue 13, 2003, Pages 7497-7502

  Kazantsev, Alexei V ^a   Krivenko, Angelika A ^a   Harrington, Daniel J ^b   Carter, Richard J ^c   Holbrook, Stephen R ^c   Adams, Paul D ^c   Pace, Norman R ^a  

^a UNIVERSITY OF COLORADO   (United States)

^b SLAC NATIONAL ACCELERATOR LABORATORY   (United States)

^c LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DIMER; HOLOENZYME; RIBONUCLEASE P; RNA;

ARTICLE; BACILLUS SUBTILIS; CONTROLLED STUDY; CRYSTAL STRUCTURE; DIMERIZATION; ENZYME STRUCTURE; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; PROTEIN BINDING; THERMOPHILIC BACTERIUM; THERMOSTABILITY; THERMOTOGA MARITIMA; X RAY CRYSTALLOGRAPHY;

CRYSTALLOGRAPHY, X-RAY; DIMERIZATION; ENDORIBONUCLEASES; MODELS, MOLECULAR; PROTEIN BINDING; RIBONUCLEASE P; RNA; RNA, CATALYTIC; TEMPERATURE; THERMOTOGA MARITIMA;

BACILLUS SUBTILIS; BACTERIA (MICROORGANISMS); NEGIBACTERIA; THERMOTOGA; THERMOTOGA MARITIMA;

EID: 0038611010     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0932597100     Document Type: Article

References (46)

1. Frank. D. N. & Pace, N. R. (1998) Annu. Rev. Biochem. 67, 153-180.
2. Gopalan, V., Vioque, A. & Altman, S. (2002) J. Biol. Chem 277, 6759-6762.
3. Gopalan. V., Talbot, S. J. & Altman, S. (1994) in RNA-Protein Interactions, eds. Nagai, K. & Mattaj, I. W. (IRL, Oxford), pp. 103-126.
4. Harris, M. E., Frank, D. N. & Pace, N. R. (1998) in RNA Structure and Function, eds. Simons, R. W. & Grunberg-Manago, M. (Cold Spring Harbor Lab. Press, Plainview, NY), pp. 309-337.
5. Guerrier-Takada, C., Gardiner, K., Marsh, T., Pace, N. & Altman, S. (1983) Cell 35, 849-857.
6. Schedl, P. & Primakoff, P. (1973) Proc. Natl. Acad. Sci. USA 70, 2091-2095.
7. Reich, C., Olsen, G. J., Pace, B. & Pace, N. R. (1988) Science 239, 178-181.
8. Crary, S. M., Niranjanakumari, S. & Fierke, C. A. (1998) Biochemistry 37, 9409-9416.
9. Loria, A. & Pan, T. (1998) Biochemistry 37, 10126-10133.
10. Kurz, J. C., Niranjanakumari, S. & Fierke, C. A. (1998) Biochemistry 37,2393-2400.
11. Niranjanakumari, S., Stams, T., Crary, S. M., Christianson, D. W. & Fierke, C. A. (1998) Proc. Natl. Acad. Sci. USA 95, 15212-15217.
12. Biswas, R., Ledman, D. W., Fox, R. O., Altman, S. & Gopalan, V. (2000) J. Mol. Biol. 296, 19-31.
13. Rox, C., Feltens, R., Pfeiffer, T. & Hartmann, R. K. (2002) J. Mol. Biol. 315, 551-560.
14. Sharkady, S. M. & Nolan, J. M. (2001) Nucleic Acids Res. 29, 3848-3856.
15. Haas, E. S. & Brown, J. W. (1998) Nucleic Acids Res. 26, 4093-4099.
16. Waugh, D. S. & Pace, N. R. (1990) J. Bacteriol. 172, 6316-6322.
17. Stams, T., Niranjanakumari, S., Fierke, C. A. & Christianson, D. W. (1998) Science 280, 752-755.
18. Spitzfaden, C., Nicholson, N., Jones, J. J., Guth, S., Lehr, R., Prescott, C. D., Hegg, L. A. & Eggleston, D. S. (2000) J. Mol. Biol. 295, 105-115.
19. Krivenko, A. A., Kazantsev, A. V., Adamidi, C., Harrington, D. J. & Pace, N. R. (2002) Acta Crystallogr. D 58, 1234-1236.
20. Doublie, S. (1997) Methods Enzymol. 276, 523-530.
21. Hendrickson, W. A. & Ogata, C. M. (1997) Methods Enzymol. 276, 494-523.
22. Collaborative Computational Project No. 4 (1994) Acta Crystallogr. D 50, 760-763.
23. Weiss, M. S. (2001) J. Appl. Crystallogr. 34, 130-135.
24. Vaguine, A. A., Richelle, J. & Wodak, S. J. (1999) Acta Crystallogr. D 55, 191-205.
25. Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu. N. S., et al. (1998) Acta Crystallogr. D 54, 905-921.
26. Bricogne, G. (1984) Acta Crystallogr. A 40, 410-445.
27. Grosse-Kunstleve, R. W. & Brunger, A. T. (1999) Acta Crystallogr. D 55, 1568-1577.
28. Perrakis, A., Morris, R. & Lamzin, V. S. (1999) Nat. Struct. Biol. 6, 458-463.
29. Jones, T. A., Zou, J. Y., Cowan, S. W. & Kjeldgaard, M. (1991) Acta Crystallogr. A 47, 110-119.
30. Sheldrick, G. M. & Schnider, T. R. (1997) in Methods Enzymol. 277, 319-343.
31. McRee, D. E. (1999) J. Struct. Biol. 125, 156-165.
32. Laskowski, R. A., MacArthur, M. W., Moss, D. S. & Thornton, J. M. (1993) J. Appl. Crystallogr. 26,283-291.
33. Henkels, C. H., Kurz, J. C., Fierkei, C. A. & Oas, T. G. (2001) Biochemistry 40, 2777-2789.
34. Xiao, S., Scott, F., Fierke, C. A. & Engelke, D. R. (2002) Annu. Rev. Biochem 71, 165-189.
35. Czworkowski, J. & Moore, P. B. (1997) Biochemistry 36, 10327-10334.
36. Nissen, P., Kjeldgaard, M., Thirup, S., Polekhina, G., Reshetnikova, L., Clark, B. F. & Nyborg, J. (1995) Science 270, 1464-1472.
37. Czworkowski, J., Wang, J., Steitz, A., & Moore, P. B. (1994) EMBO J. 13, 3661-3668.
38. Ramakrishnan, V. & White, S. W. (1992) Nature 358, 768-771.
39. Pace, N. R. & Brown, J. W. (1995) J. Bacteriol. 177, 1919-1928.
40. Paul, R., Lazarev, D. & Altman, S. (2001) Nucleic Acids Res. 29, 880-885.
41. Chan, M. K., Mukund, S.,. Kletzin, A., Adams, M. W. & Rees, D. C. (1995) Science 267, 1463-1469.
42. Watanabe, K., Chishiro, K., Kitamura, K. & Suzuki, Y. (1991) J. Biol. Chem. 266, 24287-24294.
43. Haney, P. J., Badger, J. H., Buldak, G. L., Reich, C. I., Woese, C. R. & Olsen, G. J. (1999) Proc. Natl. Acad. Sci. USA 96, 3578-3583.
44. Fang, X. W., Yang, X. J., Littrell K., Niranjanakumari, S., Thiyagarajan, P., Fierke, C. A., Sosnick, T. R. & Pan, T. (2001) RNA 7, 233-241.
45. Barrera, A., Fang, X., Jacob, J., Casey, E., Thiyagarajan, P. & Pan, T. (2002) Biochemistry 41, 12986-12994.
46. Nicholls, A., Sharp, K. & Honig, B. (1991) Proteins Struct. Funct. Genet. 11, 281-296.