Regulation of superoxide stress in Pseudomonas putida KT2440 is different from the SoxR paradigm in Escherichia coli

Biochemical and Biophysical Research Communications

Volumn 341, Issue 1, 2006, Pages 51-56

  Park, Woojun ^a,b   Peña Llopis, Samuel ^c   Lee, Yunho ^a   Demple, Bruce ^c  

^a Korea University   (South Korea)

^b Gyeongsang National University   (South Korea)

^c HARVARD SCHOOL OF PUBLIC HEALTH   (United States)

Author keywords

Biodegradation; Ferredoxin reductase; LysR type transcriptional factor; Nitric oxide; Oxidative stress; Paraquat

Indexed keywords

BACTERIAL PROTEIN; FERREDOXIN; NICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE; NITRIC OXIDE; PARAQUAT; PROTEIN SOXR; SUPEROXIDE; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL GENE; ESCHERICHIA COLI; OXIDATIVE STRESS; PRIORITY JOURNAL; PROTEIN EXPRESSION; PSEUDOMONAS PUTIDA; SEQUENCE ANALYSIS;

ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; GENE EXPRESSION REGULATION, BACTERIAL; GENES, BACTERIAL; GENES, REGULATOR; OXIDATIVE STRESS; PSEUDOMONAS PUTIDA; SPECIES SPECIFICITY; SUPEROXIDES; TRANS-ACTIVATORS; TRANSCRIPTION FACTORS;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; PSEUDOMONAS PUTIDA; SALMONELLA;

EID: 30944437009     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2005.12.142     Document Type: Article

References (32)

1. W. Park, C.O. Jeon, H. Cadillo, C. DeRito, and E.L. Madsen Survival of naphthalene-degrading Pseudomonas putida NCIB 9816-4 in naphthalene-amended soils: toxicity of naphthalene and its metabolites Appl. Microbiol. Biotechnol. 64 2004 429 435
2. N.A. Schewigert, J.B. Zehnder, and R.I.L. Eggen Chemical properties of catechols and their molecular modes of toxic action in cells, from microorganisms to mammals Environ. Microbiol. 3 2001 81 91
3. B. Demple Redox signaling and gene control in the Escherichia coli soxRS oxidative stress regulon-a review Gene 179 1996 53 57
4. P.J. Pomposiello, and B. Demple Identification of SoxS-regulated genes in Salmonella enterica serovar typhimurium J. Bacteriol. 182 2000 23 29
5. P.J. Pomposiello, and B. Demple Redox-operated genetic switches: the SoxR and OxyR transcription factors Trends Biotechnol. 19 2001 109 114
6. G. Storz, and J.A. Imlay Oxidative stress Curr. Opin. Microbiol. 2 1999 188 194
7. M. Zheng, X. Wang, L.J. Templeton, D.R. Smulski, R.A. LaRossa, and G. Storz DNA microarray-mediated transcriptional profiling of the Escherichia coli response to hydrogen peroxide J. Bacteriol. 183 2001 4562 4570
8. H. Ding, and B. Demple Direct nitric oxide signal transduction via nitrosylation of iron-sulfur centers in the SoxR transcription activator Proc. Natl. Acad. Sci. USA 97 2000 5146 5150
9. E. Hidalgo, and B. Demple Spacing of promoter elements regulates the basal expression of the soxS gene and converts SoxR from a transcriptional activator into a repressor EMBO J. 16 1997 1056 1065
10. E. Hidalgo, H. Ding, and B. Demple Redox signal transduction: mutations shifting [2Fe-2S] centers of the SoxR sensor-regulator to the oxidized form Cell 88 1997 121 129
11. P. Mukhopadhyay, M. Zheng, L.A. Bedzyk, R.A. LaRossa, and G. Storz Prominent roles of the NorR and Fur regulators in the Escherichia coli transcriptional response to reactive nitrogen species Proc. Natl. Acad. Sci. USA 101 2004 745 750
12. R.G. Martin, and J.L. Rosner The AraC transcriptional activators Curr. Opin. Microbiol. 4 2001 132 137
13. R.G. Martin, and J.L. Rosner Analysis of microarray data for the marA, soxS, and rob regulons of Escherichia coli Methods Enzymol. 370 2003 278 280
14. L.P. Wackett Pseudomonas putida-a versatile biocatalyst Nat. Biotechnol. 21 2003 36 138
15. I. Cases, V. de Lorenzo, and C.A. Ouzounis Transcription regulation and environmental adaptation in bacteria Trends Microbiol. 11 2003 248 253
16. K.E. Nelson, C. Weinel, and I.T. Paulsen Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440 Environ. Microbiol. 4 2002 799 808
17. D. Stjepandic, C. Weinel, H. Hilbert, H.L. Koo, F. Diehl, K.E. Nelson, B. Tummler, and J.D. Hoheisel The genome structure of Pseudomonas putida: high-resolution mapping and microarray analysis Environ. Microbiol. 4 2002 819 823
18. F.M. Ausubel, R. Brent, R. Kingston, D.D. Moore, J.G. Seidman, J.A. Smith, and K. Struthl Current Protocols in Molecular Biology 1999 John Wiley & Sons Inc New York, NY
19. V.S. Kalogeraki, and S.C. Winans Suicide plasmids containing promoterless reporter genes can simultaneously disrupt and create fusions to target genes of diverse bacteria Gene 188 1997 69 75
20. + reductase) gene in Pseudomonas pustida KT2440 Biochem. Biophys. Res. Commun. 339 2006 1246 1254
21. E. Hidalgo, and B. Demple An iron-sulfur center essential for transcriptional activation by the redox-sensing SoxR protein EMBO J. 13 1994 138 146
22. M. Palma, J. Zurita, J.A. Ferreras, S. Worgall, D.H. Larone, L. Shi, F. Campagne, and L.E. Quadri Pseudomonas aeruginosa SoxR does not conform to the archetypal paradigm for SoxR-dependent regulation of the bacterial oxidative stress adaptive response Infect. Immun. 73 2005 2958 2966
23. E. Hidalgo, V. Leautaud, and B. Demple The redox-regulated SoxR protein acts from a single DNA site as a repressor and an allosteric activator EMBO J. 17 1998 2629 2636
24. P.J. Pomposiello, M.H. Bennik, and B. Demple Genome-wide transcriptional profiling of the Escherichia coli responses to superoxide stress and sodium salicylate J. Bacteriol. 183 2001 3890 3902
25. A.R. Krapp, E. Rodriguez, D. Poli, H. Paladini, J.F. Palatnik, and N. Carrillo The Flavoenzyme ferredoxin (flavodoxin)-NADP(H) reductase modulates NADP(H) homeostasis during the soxRS response of Escherichia coli J. Bacteriol. 184 2002 1474 1480
26. S.I. Liochev, A. Hausladen, W.F. Beyer Jr., and I. Fridovich NADPH:Ferredoxin oxidoreductase acts as a Paraquat diaphoras and is a member of the soxRS Regulon Proc. Natl. Acad. Sci. USA 91 1994 1328 1331
27. K. Kobayashi, and S. Tagawa Activation of SoxR-dependent transcription in Pseudomonas aeruginosa J. Biochem. 136 2004 607 615
28. M.A. Martinez-Bueno, R. Tobes, M. Rey, and J.L. Ramos Detection of multiple extracytoplasmic function (ECF) sigma factors in the genome of Pseudomonas putida KT2440 and their counterparts in Pseudomonas aeruginosa PA01 Environ. Microbiol. 4 2002 842 855
29. M.A. Ramos-Diaz, and J.L. Ramos Combined physical and genetic map of the Pseudomonas putida KT2440 chromosome J. Bacteriol. 180 1998 6352 6363
30. V. Venturi Control of rpoS transcription in Escherichia coli and Pseudomonas: why so different? Mol. Microbiol. 49 2003 1 9
31. J.T. Greenberg, P. Monach, J.H. Chou, P.D. Josephy, and B. Demple Positive control of a global antioxidant defense regulon activated by superoxide-generating agents in Escherichia coli Proc. Natl. Acad. Sci. USA 87 1990 6181 6185
32. B. Normander, B.B. Christensen, S. Molin, and N. Kroer Effect of bacterial distribution and activity on conjugal gene transfer on the phylloplane of the bush bean (Phaseolus vulgaris) Appl. Environ. Microbiol. 64 1998 1902 1909