The genome structure of Pseudomonas putida: High-resolution mapping and microarray analysis

Environmental Microbiology

Volumn 4, Issue 12, 2002, Pages 819-823

  Stjepandić, Diana ^a   Weinel, Christian ^b   Hilbert, Helmut ^c   Koo, Hean L ^d   Diehl, Frank ^a   Nelson, Karen E ^d   Tümmler, Burkhard ^b   Hoheisel, Jörg D ^a  

^a GERMAN CANCER RESEARCH CENTER DKFZ   (Germany)

^b HANNOVER MEDICAL SCHOOL   (Germany)

^c QIAGEN GMBH   (Germany)

^d J CRAIG VENTER INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CLONING, MOLECULAR; CONTIG MAPPING; COSMIDS; DNA, BACTERIAL; GENE LIBRARY; GENOME, BACTERIAL; NUCLEIC ACID HYBRIDIZATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PSEUDOMONAS PUTIDA; RRNA OPERON;

PROKARYOTA; PSEUDOMONAS; PSEUDOMONAS AERUGINOSA; PSEUDOMONAS PUTIDA;

EID: 0036937555     PISSN: 14622912     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1462-2920.2002.00313.x     Document Type: Article

References (14)

1. Aign, V., Schulte, U., and Hoheisel, J.D. (2001) Hybridization mapping of Neurospora crassa linkage groups II and V. Genetics 157: 1015-1020.
2. Bagdasarian, M., and Timmis, K.N. (1982) Host: Vector systems for gene cloning in Pseudomonas. Curr Top Microbiol Immunol 96: 47-67.
3. Barnes, W.M. (1994) PCR amplification of up to 35 kb DNA with high fidelity and high yield from 1 bacteriophage templates. Proc Natl Acad Sci USA 91: 2216-2220.
4. Diehl, F., Grahlmann, S., Beier, M., and Hoheisel, J.D. (2001) Manufacturing DNA-microarrays of high spot homogeneity and reduced background signal. Nucleic Acids Res 29: e38.
5. Feinberg, A.P., and Vogelstein, B. (1983) A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal Biochem 132: 6-13.
6. Frohme, M., Camargo, A.A., Heber, S., Czink, C., Simpson, A.J.D., Hoheisel, J.D., and de Souza, A.P. (2000) Mapping analysis of the Xylella fastidiosa genome. Nucleic Acids Res 28: 3100-3104.
7. Frohme, M., Camargo, A., Czink, C., Matsukuma, A.Y., Simpson, A.J.G., Hoheisel, J.D., and Verjovski-Almeida, S. (2001) Directed gap closure in large scale sequencing projects. Genome Res 11: 901-903.
8. Hanke, J., and Hoheisel, J.D. (1999) Construction and screening of cosmid libraries. In The Nucleic Acid Protocols Handbook. Rapley, R.R. (ed.) Totowa, New Jersey: Humana Press, pp. 405-414.
9. Hoheisel, J.D., Maier, E., Mott, R., McCarthy, L., Grigoriev, A.V., Schalkwyk, L.C., et al. (1993) High-resolution cosmid and P1 maps spanning the 14-Mbp genome of the fission yeast Schizosaccharomyces pombe. Cell 73: 109-120.
10. Mott, R., Grigoriev, A., Maier, E., Hoheisel, J.D., and Lehrach, H. (1993) Algorithms and software tools for ordering clone libraries; application to the mapping of the genome of Schizosaccharomyces pombe. Nucleic Acids Res 21: 1965-1974.
11. O'Sullivan, D.J., and O'Gara, F. (1992) Traits of fluorescent Pseudomonas spp. involved in suppression of plant root pathogens. Microbiol Rev 56: 662-676.
12. Ramos-Diaz, M.A., and Ramos, J.L. (1998) Combined physical and genetic map of the Pseudomonas putida KT2440 chromosome. J Bacteriol 180: 6352-6363.
13. Sambrook, J., Fritsch, E.F., and Maniatis, T. (1989) Molecular Cloning, A Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
14. Weinel, C., Tümmler, B., Hilbert, H., Nelson, K.E., and Kiewitz, C. (2001) General method of rapid Smith/Birnstiel mapping adds for gap closure in shotgun microbial genome sequencing projects: Application to Pseudomonas putida KT2440. Nucleic Acids Res 29: e110.