Comparison of several methods for the extraction of DNA from potatoes and potato-derived products

Journal of Agricultural and Food Chemistry

Volumn 53, Issue 26, 2005, Pages 9848-9859

  Smith, Donna S ^a   Maxwell, Philip W ^a   De Boer, Solke H ^a  

^a CANADIAN FOOD INSPECTION AGENCY   (Canada)

Author keywords

DNA detection; DNA extraction; GMO; Potato; qPCR; Solanum tuberosum

Indexed keywords

CETRIMIDE; DYES, REAGENTS, INDICATORS, MARKERS AND BUFFERS; PLANT DNA; STARCH;

AGAR GEL ELECTROPHORESIS; ARTICLE; CHEMISTRY; COMPARATIVE STUDY; ELECTROPHORESIS; FLOUR; FOOD HANDLING; GENOME; ISOLATION AND PURIFICATION; PLANT ROOT; POTATO; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION;

CETRIMONIUM COMPOUNDS; DNA, PLANT; ELECTROPHORESIS; ELECTROPHORESIS, AGAR GEL; FLOUR; FOOD HANDLING; GENOME, PLANT; INDICATORS AND REAGENTS; PLANT ROOTS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SOLANUM TUBEROSUM; STARCH;

SOLANUM TUBEROSUM; SUS;

EID: 30544443959     PISSN: 00218561     EISSN: None     Source Type: Journal    
DOI: 10.1021/jf051201v     Document Type: Article

References (25)

1. Holst-Jensen, A.; Rønning, S. B.; Løvseth, A.; Berdal, K. G. PCR technology for screeening and quantification of genetically modified organisms (GMOs). Anal. Bioanal. Chem. 2003, 375, 985-993.
2. Miraglia, M.; Berdal, K. G.; Brera, C.; Corbisier, P.; Holst-Jensen, A.; Kok, E. J.; Marvin, H. J. P.; Schimmel, H.; Rentsch, J.; van Rie, J. P. P. F.; Zagon, J. Detection and traceability of genetically modified organisms in the food production chain. Food Chem. Toxicol. 2004, 42, 1157-1180.
3. Engel, K.-H.; Moreano, F. Methods to detect the application of genetic engineering in composed and processed foods. In Genetically Engineered Food, Methods and Detection; Heller, K. J., Ed.; Wiley-VCH: Weinhiem, Germany, 2003; 276 pp.
4. ENGL GMO Methods Database; http://biotech.jrc.it/methods-database.htm.
5. Woolfe, M.; Primrose, S. Food forensics: using DNA technology to combat misdescription and fraud. Trends Biotechnol. 2004, 22, 222-226.
6. Warburton, M.; Hoisington, D. Applications of molecular marker techniques to the use of international germplasm collections. In Plant Genotyping: the DNA Fingerprinting of Plants; Henry, R. J., Ed.; CABI Publishing: New York, 2001; 325 pp.
7. Corbett, G.; Lee, D.; Donini, P.; Cooke, R. J. Identification of potato varieties by DNA profiling. Acta Hortic. 2001, 546, 387-390.
8. Gould, W. A. Potato Production, Processing and Technology; CTI Publications: Timonium, MD, 1999; 259 pp.
9. Henson, J. M.; French, R. The Polymerase Chain Reaction and plant disease diagnosis. Annu. Rev. Phytopathol. 1993, 31, 81-109.
10. Wilson, I. G. Inhibition and facilitation of nucleic acid amplification. Appl. Environ. Microbiol. 1997, 63, 3741-3751.
11. Terry, C. F.; Harris, N.; Parkes, H. C. Detection of genetically modified crops and their derivatives: critical steps in sample preparation and extraction. J. AOAC Int. 2002, 85, 768-774.
12. Rutledge, R. G.; Côté, C. Mathematics of quantitative kinetic PCR and the application of standard curves. Nucleic Acids Res. 2003, 31, e93.
13. Zimmermann, A.; Lüthy, J.; Pauli, U. Quantitative and qualitative evaluation of nine different extraction methods for nucleic acids on soya bean food samples. Eur. Food Res. Technol. 1998, 207, 81-90.
14. Holden, M. J.; Blasic, J. R., Jr.; Bussjaeger, L.; Kao, C.; Shokere, L. A.; Kendall, D. C.; Freese, L.; Jenkins, G. R. Evaluation of extraction methodologies for corn kernel (Zea mays) DNA for detection of trace amounts of biotechnology-derived DNA. J. Agric. Food Chem. 2003, 51, 2468-2474.
15. Peano, C.; Samson, M. C.; Palmieri, L.; Gulli, M.; Marmiroli, N. Qualitative and quantitative evaluation of the genomic DNA extracted from GMO and non-GMO foodstuffs with four different extraction methods. J. Agric. Food Chem. 2004, 52, 6962-6968.
16. Klein, J.; Altenbuchner, J.; Mattes, R. Nucleic acid and protein elimination during the sugar manufacturing process of conventional and transgenic sugar beets. J. Biotechnol. 1998, 60, 145-153.
17. Quirasco, M.; Schoel, B.; Plasencia, J.; Fagan, J.; Galvez, A. Suitability of real-time quantitative polymerase chain reaction and enzyme-linked immunosorbent assay for cry9C detection in Mexican corn tortillas: fate of DNA and protein after alkaline cooking. J. AOAC Int. 2004, 87, 639-646.
18. International Starch Institute. TM5-2www ISI-Technical Memorandum on Production of Potato Starch; http://home3.inet.tele.dk/starch/isi/starch/tm5www- potato.htm.
19. Spoth, B.; Strauss, E. Screening for genetically modified organisms using Promega's Wizard resin. Promega Notes 1998, 73, 23-25.
20. Lipp, M.; Brodmann, P.; Pietsch, K.; Pauwels, J.; Anklam, E. IUPAC collaborative trial study to detect genetically modified soy beans and maize in dried powder. J. AOAC Int. 1999, 82, 923-928.
21. Borovkov, A. Y. Organization of potato sucrose synthase gene; Genbank accession no. U21129, direct submission, 1995.
22. Akiyama, H.; Sugimoto, K.; Matsumoto, M.; Isuzugawa, K.; Shibuya, M.; Goda, Y.; Toyoda, M. A detection method of recombinant DNA from genetically modified potato (NewLeaf Plus potato) and detection of NewLeaf Plus potato in snack. J. Food Hyg. Soc. Jpn. 2002, 43, 24-29.
23. Bitner, R.; Koller, S.; Shenoi, H.; Henderson, K. S.; Silva, P.; Tsongalis, G. J. Automation of genomic DNA purification using the Magnesil KF genomic system. Promega Notes 2003, 85, 21-24.
24. Haymes, K. M.; Ibrahim, I. A.; Mischke, S.; Scott, D. L.; Saunders, J. A. Rapid isolation of DNA from chocolate and date palm tree crops. J. Agric. Food Chem. 2004, 52, 5456-5462.
25. Berdal, K. G.; Holst-Jensen, A. Roundup Ready soybean event-specific real-time quantitative PCR assay and estimation of the practical detection and quantification limits in GMO analysis. Eur. Food Res. Technol. 2001, 213, 432-438.