HinCyc: A Knowledge Base of the Complete Genome and Metabolic Pathways of II. influenzae

Proceedings of the 4th International Conference on Intelligent Systems for Molecular Biology, ISMB 1996

Volumn , Issue , 1996, Pages 116-124

  Karp, Peter D ^a   Ouzounis, Christos ^a   Paley, Suzanne ^a  

^a SRI INTERNATIONAL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ENZYMES; ESCHERICHIA COLI; FORECASTING; KNOWLEDGE BASED SYSTEMS; METABOLISM;

BIOCHEMICAL PATHWAY; COMPLETE GENOMES; E. COLI; ENZYME-CATALYZED REACTIONS; GENOMIC SEQUENCE; METABOLIC PATHWAYS; REACTION PATHWAYS;

GENES;

ARTICLE; BACTERIAL GENOME; BIOLOGICAL MODEL; COMPUTER NETWORK; COMPUTER PROGRAM; ESCHERICHIA COLI; GENETICS; HAEMOPHILUS INFLUENZAE; VIRUS GENOME;

COMPUTER COMMUNICATION NETWORKS; ESCHERICHIA COLI; GENOME, BACTERIAL; GENOME, VIRAL; HAEMOPHILUS INFLUENZAE; MODELS, BIOLOGICAL; SOFTWARE;

EID: 0030340124     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (9)

1. Altschul, S.; Gish, W.; Miller, W.; Myers, E.; and Lipman, D. 1990. Basic local alignment search tool. J MolBio 215:403-410.
2. Bairoch, A., and Boeckmann, B. 1994. The SWISS-PROTprotein sequence data bank: current status. Nucleic Aczds Research 22:3578-3580.
3. Casari, G.; Andrade, A.; Bork, P.; Boyle, J.; Daruvar. A.; Ouzounis, C.; Schneider, R.; Tamames,J.: Valencia, A.; and Sander, C. 1995. Challenging times for bioinformatics. Nature 376:647-648.
4. Fleishmann, R.; Adams, M.; White, O.; Clayton, R.; Kirkness, E.; Kerlavage, A.; BuR, C.; Tomb, J.-F.; Dougherty, B.; Merrick, J.; McKenney,K.; Sutton, G.; FitzHugh, W.; Fields, C.; Gocayne, J.; Scott, J.; Shirley, R.; Liu, L.-I.; Glodek, A.; Kelley, J.; Weidman, J.; Phillips, C4 Spriggs, T.; Hedblom, E.: Cotton, M.; Utterback, T.; Hanna, M.; Nguyen, D.; Saudek, D.; Brandon, R.; Fine, L.; Fritchman, J.; Fuhrmann, J.; Geoghagen, N.; Gnehm, C.; McDonald, L.; Small, K.; Fraser, C.; Smith, H.; and Venter, J. 1995. Whole-genome random sequencing and assembly of Haemophilus influenzae. Science 269:496-512.
5. Gaasterland, T., and Selkov, E. 1995. Reconstruction of metabolic networks using incomplete information. In Rawlings, C.; Clark, D4Altman, R.; Hunter, L.; Lengauer, T.; and Wodak,S., eds., Proceedings of the Third International Con]ere.nce on Intelligent Systems for Molecular Biology, 127-135. MenloPark, CA: AAAIPress.
6. Karp, P., and Paley, S. 1994. Representations of metabolic knowledge: Pathways. In Altman, R.; Brutlag. D.; Karp, P.; Lathrop, R.; and Searls, D., eds., Proceedings of the Second lnternalional Conference on Intelligent Systems for Molecular Biology, 203-211. Menlo Park. CA: AAAIPress.
7. Karp, P., and Paley, S. 1996. Integrated access to metabolic and genomic data. Journal of Computational Biology 3(1):191-212.
8. Karp, P., and Riley, M. 1993. Representations of metabolic knowledge. In Hunter, L.; Searls, D.; and Shavlik, J., eds., Proceedings of the First International Conference on Intelligent Systems for Molecular Biology, 207-215. MenloPark, CA: AAAIPress.
9. Karp, P.; Riley, M.; Paley, S.; and Pellegrini-Toole, A. 1996. EcoCyc: Electronic encyclopedia of E. colt genes and metabolism. Nuc. Acids Res. 24(1):32-40.