The aMAZE LightBench: A web interface to a relational database of cellular processes

Nucleic Acids Research

Volumn 32, Issue DATABASE ISS., 2004, Pages

  Lemer, Christian ^b   Antezana, Erick ^b   Couche, Fabian ^b   Fays, Frédéric ^b   Santolaria, Xavier ^b   Janky, Rekin's ^b   Deville, Yves ^a   Richelle, Jean ^b   Wodak, Shoshana J ^b  

^a UNIVERSITÉ CATHOLIQUE DE LOUVAIN   (Belgium)

^b UNIVERSITÉ LIBRE DE BRUXELLES   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

AMAZE LIGHTBENCH; ARTICLE; CATALYSIS; CELL ACTIVITY; CHEMICAL INTERACTION; CHEMICAL REACTION; COMPUTER INTERFACE; GENE EXPRESSION; GENETIC DATABASE; METABOLISM; PRIORITY JOURNAL; PROTEIN ASSEMBLY; SCIENTIFIC LITERATURE; SIGNAL TRANSDUCTION;

BIOCHEMISTRY; CELL PHYSIOLOGY; COMPUTATIONAL BIOLOGY; DATABASES, FACTUAL; GENE EXPRESSION REGULATION; INFORMATION STORAGE AND RETRIEVAL; INTERNET; METABOLISM; MOLECULAR BIOLOGY; PROTEIN BINDING; SIGNAL TRANSDUCTION; USER-COMPUTER INTERFACE;

EID: 0345863903     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (16)

1. Boeckmann,B., Bairoch,A., Apweiler,R., Blatter,M.-C., Estreicher,A., Gasteiger,E., Martin,L.J., Michoud,K., O'Donovan,C., Phan,I. et al. (2003) The SWISS-PROT protein sequence database and its supplement TrEMBL in 2003. Nucleic Acids Res., 31, 365-370.
2. Mulder,N.J., Apweiler,R., Attwood,T.K., Bairoch,A., Barrell,D., Bateman,A, Binns,D., Biswas,M., Bradley,P., Bork,P. et al. (2003) The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Res., 31, 315-318.
3. van Helden,J., Naim,A., Mancuso,R., Eldridge,M., Wernisch,L., Gilbert,D. and Wodak,S.J. (2000) Representing and analysing molecular and cellular function using the computer. Biol. Chem., 381, 921-935.
4. Xenarios,I., Salwínski,L., Duan,X.J., Higney,P., Kim,S.-M. and Eisenberg,D. (2002) DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions. Nucleic Acids Res., 30, 303-305.
5. Bader,G.D., Betel,D. and Hogue,C.W.V. (2003) BIND: The Biomolecular Interaction Network Database. Nucleic Acids Res., 31, 248-250.
6. Zanzoni,A., Montecchi-Palazzi,L., Quondam,M., Ausiello,G., Helmer-Citterich,M. and Cesareni,G. (2002) MINT: a Molecular INTeraction database. FEBS Lett., 513, 135-140.
7. Matys,V., Fricke,E., Geffers,R., Gößling,E., Haubrock,M., Hehl,R., Hornischer,K., Karas,D., Kel,A.E., Kel-Margoulis,O.V. et al. (2003). TRANSFAC®: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
8. Salgado,H., Santos-Zavaleta,A., Gama-Castro,S., Millán-Zárate,D., Díaz-Peredo,E., Sánchez-Solano,F., Pérez-Rueda,E., Bonavides-Martínez,C. and Collado-Vides,J. (2001) RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12. Nucleic Acids Res., 29, 72-74.
9. Takai-Igarashi T., Nadaoka,Y. and Kaminuma,T. (1998). A database for cell signaling networks. J. Comput. Biol., 5, 747-754.
10. Krull,M., Voss,N., Choi,C., Pistor,S., Potapov,A. and Wingender,E. (2003) TRANSPATH®: an integrated database on signal transduction and a tool for array analysis. Nucleic Acids Res., 31, 97-100.
11. Kanehisa,M., Goto,S., Kawashima,S. and Nakaya,A. (2002) The KEGG databases at GenomeNet. Nucleic Acids Res., 30, 42-46.
12. Karp,P.D., Riley,M., Saier,M., Paulsen,I.T., Collado-Vides,J., Paley,S.M., Pellegrini-Toole,A., Bonavides,C. and Gama-Castro,S. (2002) The EcoCyc Database. Nucleic Acids Res., 30, 56-58.
13. Overbeek,R., Larsen,N., Pusch,G.D., D'Souza,M.,Jr, E.S., Kyrpides,N., Fonstein,M., Maltsev,N. and Selkov,E. (2000) WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction. Nucleic Acids Res., 28, 123-125.
14. Mendes,P. (1993) GEPASI: a software package for modelling the dynamics, steady states and control of biochemical and other systems. Comput. Appl. Biosci., 5, 563-571.
15. van Helden,J., Naim,A., Lemer,C., Mancuso,R., Eldridge,M. and Wodak,S. (2001) From molecular activities and processes to biological function. Brief. Bioinform., 2, 98-103.
16. Schomburg,I., Chang,A., Hofmann,O., Ebeling,C., Ehrentreich,F. and Schomburg,D. (2002) BRENDA: a resource for enzyme data and metabolic information. Trends Biochem. Sci., 27, 54-56.