Use of DNA photoaffinity labeling to study nucleosome remodeling by SWI/SNF

Methods: A Companion to Methods in Enzymology

Volumn 19, Issue 3, 1999, Pages 434-446

  Sengupta, Sarojini M ^a   Persinger, Jim ^a   Bartholomew, Blaine ^a   Peterson, Craig L ^b  

^a SOUTHERN ILLINOIS UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b UNIVERSITY OF MASSACHUSETTS MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; DNA BINDING PROTEIN;

ARTICLE; CHROMATIN STRUCTURE; CROSS LINKING; NONHUMAN; NUCLEOSOME; PHOTOAFFINITY LABELING; PRIORITY JOURNAL; PROTEIN DNA INTERACTION; TECHNIQUE;

EID: 0033377358     PISSN: 10462023     EISSN: None     Source Type: Journal    
DOI: 10.1006/meth.1999.0880     Document Type: Article

References (33)

1. Luger K., Mader A. W., Richmond R. K., Sargent D. F., Richmond T. J. Nature. 389:1997;251-260.
2. Workman J. L., Buchman A. R. Trends Biochem. Sci. 18:1993;90-95.
3. Burns L. G., Peterson C. L. Biochim. Biophys. Acta. 1350:1997;159-168.
4. Papoulas O., Beek S. J., Moseley S. L., McCallum C. M., Sarte M., Shearn A., Tamkun J. W. Development. 125:1998;3955-3966.
5. Kwon H., Imbalzano A. N., Khavari P. A., Kingston R. E., Green M. R. Nature. 370:1994;477-481.
6. Imbalzano A. N., Kwon H., Green M. R., Kingston R. E. Nature. 370:1994;481-485.
7. Wang W., Xue Y., Zhou S., Kuo A., Cairns B. R., Crabtree G. R. Genes Dev. 10:1996;2117-2130.
8. Wang W. EMBO J. 15:1996;5370-5382.
9. Cote J., Quinn J., Workman J. L., Peterson C. L. Science. 265:1994;53-60.
10. Cairns B. R., Kim Y. J., Sayre M. H., Laurent B. C., Kornberg R. D. Proc. Natl. Acad. Sci. USA. 91:1994;1950-1954.
11. Quinn J., Fyrberg A. M., Ganster R. W., Schmidt M. C., Peterson C. L. Nature. 379:1996;844-847.
12. Bartholomew B., Meares C. F., Dahmus M. E. J. Biol. Chem. 265:1990;3731-3737.
13. Bartholomew B., Kassavetis G. A., Braun B. R., Geiduschek E. P. EMBO J. 9:1990;2197-2205.
14. Bartholomew B., Kassavetis G. A., Geiduschek E. P. Mol. Cell. Biol. 11:1991;5181-5189.
15. Bartholomew B., Durkovich D., Kassavetis G. A., Geiduschek E. P. Mol. Cell. Biol. 13:1993;942-952.
16. Braun B. R., Bartholomew B., Kassavetis G. A., Geiduschek E. P. J. Mol. Biol. 228:1992;1063-1077.
17. Lannutti B. J., Persinger J., Bartholomew B. Biochemistry. 35:1996;9821-9831.
18. Kassavetis G. A., Bartholomew B., Blanco J. A., Johnson T. E., Geiduschek E. P. Proc. Natl. Acad. Sci. USA. 88:1991;7308-7312.
19. Persinger J., Bartholomew B. J. Biol. Chem. 271:1996;33039-33046.
20. Robert F., Douziech M., Forget D., Egly J. M., Greenblatt J., Burton Z. F., Coulombe B. Mol. Cell. 2:1998;341-351.
21. Coulombe B., Li J., Greenblatt J. J. Biol. Chem. 269:1994;19962-19967.
22. Rhodes D. EMBO J. 4:1985;3473-3482.
23. Hayes J. J., Tullius T. D., Wolffe A. P. Proc. Natl. Acad. Sci. USA. 87:1990;7405-7409.
24. Hayes J. J., Bashkin J., Tullius T. D., Wolffe A. P. Biochemistry. 30:1991;8434-8440.
25. Hayes J. J., Wolffe A. P. Proc. Natl. Acad. Sci. USA. 90:1993;6415-6419.
26. Wolffe A. P., Jordan E., Brown D. D. Cell. 44:1986;381-389.
27. Sambrook J., Fritsch E. F., Maniatis T. Molecular Cloning: A Laboratory Manual. 1989;Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
28. Bartholomew B., Tinker R. L., Kassavetis G. A., Geiduschek E. P. Meth. Enzymol. 262:1995;476-494.
29. Bayley H. Work T. S., Burdon R. H. Photogenerated Reagents in Biochemistry and Molecular Biology: Laboratory Techniques in Biochemistry and Molecular Biology. 1983;Elsevier, Amsterdam, New York.
30. Tate J. J., Persinger J., Bartholomew B. Nucleic Acids Res. 26:1998;1421-1426.
31. Cote J., Utley R. T., Workman J. L. Adolph K. W. Methods in Molecular Genetics. 1995;108-128 Academic Press, San Diego.
32. Logie C., Peterson C. Meth. Enzymol. 1999.
33. Pruss D., Bartholomew B., Persinger J., Hayes J., Arents G., Moudrianakis E. N., Wolffe A. P. Science. 274:1996;614-617.