Use of Forster's resonance energy transfer microscopy to study lipid rafts

Biochimica et Biophysica Acta - Molecular Cell Research

Volumn 1746, Issue 3, 2005, Pages 221-233

  Rao, Madan ^a,b   Mayor, Satyajit ^a,b  

^a TATA INSTITUTE OF FUNDAMENTAL RESEARCH   (India)

^b RAMAN RESEARCH INSTITUTE   (India)

Author keywords

Active organization; GPI anchored protein; Hetero FRET; Homo FRET; Microscopy; Raft

Indexed keywords

GLYCOSYLPHOSPHATIDYLINOSITOL; MEMBRANE PROTEIN;

CELL MEMBRANE; FLUORESCENCE RESONANCE ENERGY TRANSFER; FORSTER RESONANCE ENERGY TRANSFER MICROSCOPY; LIPID RAFT; MICROSCOPY; ORGANIZATION; PRIORITY JOURNAL; PROTEIN DOMAIN; QUANTUM MECHANICS; REVIEW; THEORETICAL STUDY;

ANIMALS; CELL MEMBRANE; FLUORESCENCE RESONANCE ENERGY TRANSFER; GLYCOSYLPHOSPHATIDYLINOSITOLS; HUMANS; MEMBRANE LIPIDS; MEMBRANE MICRODOMAINS; MICROSCOPY; MODELS, BIOLOGICAL;

EID: 29144533892     PISSN: 01674889     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbamcr.2005.08.002     Document Type: Review

References (79)

1. M. Zerial, and H. McBride Rab proteins as membrane organizers Nat. Rev., Mol. Cell Biol. 2 2001 107 117
2. J. Rappoport, S. Simon, and A. Benmerah Understanding living clathrin-coated pits Traffic 5 2004 327 337
3. V.I. Slepnev, and P. De Camilli Accessory factors in clathrin-dependent synaptic vesicle endocytosis Nat. Rev., Neurosci. 1 2000 161 172
4. M.L. Dustin, and D.R. Colman Neural and immunological synaptic relations Science 298 2002 785 789
5. K. Simons, and G. van Meer Lipid sorting in epithelial cells Biochemistry 27 1988 6197 6202
6. K. Simons, and E. Ikonen Functional rafts in cell membranes Nature 387 1997 569 572
7. K. Simons, and D. Toomre Lipid rafts and signal transduction Nat. Rev., Mol. Cell Biol. 1 2000 31 39
8. S. Munro Lipid rafts: elusive or illusive? Cell 115 2003 377 388
9. S. Mayor, and M. Rao Rafts: scale-dependent, active lipid organization at the cell surface Traffic 5 2004 231 240
10. K. Simons, and W.L. Vaz Model systems, lipid rafts, and cell membranes Annu. Rev. Biophys. Biomol. Struct. 33 2004 269 295
11. A. Pralle, P. Keller, E. Florin, K. Simons, and J.K. Horber Sphingolipid-cholesterol rafts diffuse as small entities in the plasma membrane of mammalian cells J. Cell Biol. 148 2000 997 1008
12. R.G. Anderson, and K. Jacobson A role for lipid shells in targeting proteins to caveolae, rafts, and other lipid domains Science 296 2002 1821 1825
13. F.R. Maxfield Plasma membrane microdomains Curr. Opin. Cell Biol. 14 2002 483 487
14. M. Edidin The state of lipid rafts: from model membranes to cells Annu. Rev. Biophys. Biomol. Struct. 16 2003 16
15. D.A. Brown, and E. London Structure and function of sphingolipid- and cholesterol-rich membrane rafts J. Biol. Chem. 275 2000 17221 17224
16. H. Heerklotz Triton promotes domain formation in lipid raft mixtures Biophys. J. 83 2002 2693 2701
17. H. Heerklotz, H. Szadkowska, T. Anderson, and J. Seelig The sensitivity of lipid domains to small perturbations demonstrated by the effect of Triton J. Mol. Biol. 329 2003 793 799
18. R.F. De Almeida, A. Fedorov, and M. Prieto Sphingomyelin/ Phosphatidylcholine/Cholesterol phase diagram: boundaries and composition of lipid rafts Biophys. J. 85 2003 2406 2416
19. S. Mayor, and H. Riezman Sorting GPI-anchored proteins Nat. Rev., Mol. Cell Biol. 5 2004 110 120
20. J. Kwik, S. Boyle, D. Fooksman, L. Margolis, M.P. Sheetz, and M. Edidin Membrane cholesterol, lateral mobility, and the phosphatidylinositol 4,5-bisphosphate-dependent organization of cell actin Proc. Natl. Acad. Sci. U. S. A. 100 2003 13964 13969
21. L.J. Foster, C.L. De Hoog, and M. Mann Unbiased quantitative proteomics of lipid rafts reveals high specificity for signaling factors Proc. Natl. Acad. Sci. U. S. A. 100 2003 5813 5818
22. S. Schuck, M. Honsho, K. Ekroos, A. Shevchenko, and K. Simons Resistance of cell membranes to different detergents Proc. Natl. Acad. Sci. U. S. A. 100 2003 5795 5800
23. C. Zurzolo, G. van Meer, and S. Mayor The order of rafts EMBO Rep. 4 2003 1117 1121
24. P. Sharma, S. Sabharanjak, and S. Mayor Endocytosis of lipid rafts: an identity crisis Semin. Cell Dev. Biol. 13 2002 205 214
25. C. Dietrich, L.A. Bagatolli, Z.N. Volovyk, N.L. Thompson, M. Levi, K. Jacobson, and E. Gratton Lipid rafts reconstituted in model membranes Biophys. J. 80 2001 1417 1428
26. C. Dietrich, Z.N. Volovyk, M. Levi, N.L. Thompson, and K. Jacobson Partitioning of Thy-1, GM1, and cross-linked phospholipid analogs into lipid rafts reconstituted in supported model membrane monolayers Proc. Natl. Acad. Sci. U. S. A. 98 2001 10642 10647
27. C. Dietrich, B. Yang, T. Fujiwara, A. Kusumi, and K. Jacobson Relationship of lipid rafts to transient confinement zones detected by single particle tracking Biophys. J. 82 2002 274 284
28. M. Hao, S. Mukherjee, and F.R. Maxfield Cholesterol depletion induces large scale domain segregation in living cell membranes Proc. Natl. Acad. Sci. U. S. A. 98 2001 13072 13077
29. K. Ritchie, R. Iino, T. Fujiwara, K. Murase, and A. Kusumi The fence and picket structure of the plasma membrane of live cells as revealed by single molecule techniques (Review) Mol. Membr. Biol. 20 2003 13 18
30. K. Ritchie, and A. Kusumi Single-particle tracking image microscopy Methods Enzymol. 360 2003 618 634
31. M. Edidin Shrinking patches and slippery rafts: scales of domains in the plasma membrane Trends Cell Biol. 11 2001 492 496
32. T. Friedrichson, and T.V. Kurzchalia Microdomains of GPI-anchored proteins in living cells revealed by crosslinking Nature 394 1998 802 805
33. S. Paladino, D. Sarnataro, R. Pillich, S. Tivodar, L. Nitsch, and C. Zurzolo Protein oligomerization modulates raft partitioning and apical sorting of GPI-anchored proteins J. Cell Biol. 167 2004 699 709
34. R.V. Krishnan, R. Varma, and S. Mayor Fluorescence methods to probe nanometer-scale organization of molecules in living cell membranes J. Fluoresc. 11 2001 211 226
35. A. Periasamy, and R.N. Day Visualizing protein interactions in living cells using digitized GFP imaging and FRET microscopy Methods Cell Biol. 58 1999 293 314
36. P.I. Bastiaens, and A. Squire Fluorescence lifetime imaging microscopy: spatial resolution of biochemical processes in the cell Trends Cell Biol. 9 1999 48 52
37. T.M. Jovin, and D.J. Arndt-Jovin E. Kohen J.G. Hirschberg Cell Structure and Function by Microspectrofluorometry 1989 Academic Press San Diego 99 117
38. R. Varma, and S. Mayor GPI-anchored proteins are organized in submicron domains at the cell surface Nature 394 1998 798 801
39. P. Sharma, R. Varma, R.C. Sarasij, Ira, K. Gousset, G. Krishnamoorthy, M. Rao, and S. Mayor Nanoscale organization of multiple GPI-anchored proteins in living cell membranes Cell 116 2004 577 589
40. T. Forster Intermolecular energy migration and fluorescence. Surface density Ann. Phys. 2 1948 55 75
41. L. Stryer Fluorescence energy transfer as a spectroscopic ruler Annu. Rev. Biochem. 47 1978 819 846
42. R.E. Dale, J. Eisinger, and W.E. Blumberg The orientation freedom of molecular probes Biophys. J. 26 1979 161 193
43. P. Wu, and L. Brand Orientation factor in steady-state and time-resolved resonance energy transfer measurements Biochemistry 31 1992 7939 7947
44. G.H. Patterson, D.W. Piston, and B.G. Barisas Forster distances between green fluorescent protein pairs Anal. Biochem. 284 2000 438 440
45. T.M. Jovin, and D.J. Arndt-Jovin Luminescence digital imaging microscopy Annu. Rev. Biophys. Biophys. Chem. 18 1989 271 308
46. G.R. Bright, G.W. Fisher, J. Rogowska, and D.L. Taylor D.L. Taylor Y. Wang Fluorescence Microscopy of Living Cells in Culture (Part B) 1989 Academic Press Inc. California 157 192
47. K.W. Dunn, S. Mayor, J.N. Myers, and F.R. Maxfield Applications of ratio fluorescence microscopy in the study of cell physiology FASEB J. 8 1994 573 582
48. A.K. Kenworthy, and M. Edidin M.H. Gelb Protein Lipidation Protocols 1999 Humana Press Totowa, NJ 37 49
49. D.A. Zacharias, J.D. Violin, A.C. Newton, and R.Y. Tsien Partitioning of lipid-modified monomeric GFPs into membrane microdomains of live cells Science 296 2002 913 916
50. A.K. Kenworthy, and M. Edidin Distribution of a glycosylphosphatidylinositol-anchored protein at the apical surface of MDCK cells examined at a resolution of and lt;100 A using imaging fluorescence resonance energy transfer J. Cell Biol. 142 1998 69 84
51. A.K. Kenworthy, N. Petranova, and M. Edidin High-resolution FRET microscopy of cholera toxin B-subunit and GPI-anchored proteins in cell plasma membranes Mol. Biol. Cell 11 2000 1645 1655
52. G.W. Gordon, G. Berry, X.H. Liang, B. Levine, and B. Herman Quantitative fluorescence resonance energy transfer measurements using fluorescence microscopy Biophys. J. 74 1998 2702 2713
53. B. Herman D.L. Taylor Y. Wang Fluorescence Microscopy of Living Cells in Culture (part B) 1989 Academic Press Inc. California 220 243
54. N. Billinton, and A.W. Knight Seeing the wood through the trees: a review of techniques for distinguishing green fluorescent protein from endogenous autofluorescence Anal. Biochem. 291 2001 175 197
55. P. Nagy, G. Vamosi, A. Bodnar, S.J. Lockett, and J. Szollosi Intensity-based energy transfer measurements in digital imaging microscopy Eur Biophys. J. 27 1998 377 389
56. T. Oida, Y. Sako, and A. Kusumi Fluorescence lifetime imaging microscopy (flimscopy). Methodology development and application to studies of endosome fusion in single cells Biophys. J. 64 1993 676 685
57. H. Wallrabe, and A. Periasamy Imaging protein molecules using FRET and FLIM microscopy Curr. Opin. Biotechnol. 16 2005 19 27
58. J.V. Rocheleau, M. Edidin, and D.W. Piston Intrasequence GFP in class I MHC molecules, a rigid probe for fluorescence anisotropy measurements of the membrane environment Biophys. J. 84 2003 4078 4086
59. I. Gautier, M. Tramier, C. Durieux, J. Coppey, R.B. Pansu, J.C. Nicolas, K. Kemnitz, and M. Coppey-Moisan Homo-FRET microscopy in living cells to measure monomer-dimer transition of GFT-tagged proteins Biophys. J. 80 2001 3000 3008
60. G. Weber Dependence of polarization of the fluorescence on the concentration Trans. Faraday Soc. 50 1954 552 555
61. J.R. Lakowicz Principles of Fluorescence Spectroscopy 2nd ed. 1999 Plenum Press New York
62. V.M. Agranovich, and M.D. Galanin Electronic Excitation energy transfer in condensed matter 1982 North Holland Publishing Co. Amsterdam
63. L.W. Runnels, and S.F. Scarlata Theory and application of fluorescence homotransfer to melittin oligomerization Biophys. J. 69 1995 1569 1583
64. M.A. Rizzo, and D.W. Piston High-contrast imaging of fluorescent protein FRET by fluorescence polarization microscopy Biophys. J. 88 2005 L14 L16
65. A. Volkmer, V. Subramaniam, D.J. Birch, and T.M. Jovin One- and two-photon excited fluorescence lifetimes and anisotropy decays of green fluorescent proteins Biophys. J. 78 2000 1589 1598
66. O.O. Glebov, and B.J. Nichols Lipid raft proteins have a random distribution during localized activation of the T-cell receptor Nat. Cell Biol. 6 2004 238 243
67. D.J. Irvine, K.A. Hue, A.M. Mayes, and L.G. Griffith Simulations of cell-surface integrin binding to nanoscale-clustered adhesion ligands Biophys. J. 82 2002 120 132
68. D. Bray, M.D. Levin, and C.J. Morton-Firth Receptor clustering as a cellular mechanism to control sensitivity Nature 393 1998 85 88
69. H. Matsue, K.G. Rothberg, A. Takashima, B.A. Kamen, R.G. Anderson, and S.W. Lacey Folate receptor allows cells to grow in low concentrations of 5-methyltetrahydrofolate Proc. Natl. Acad. Sci. U. S. A. 89 1992 6006 6009
70. C.V. Carman, and T.A. Springer Integrin avidity regulation: are changes in affinity and conformation underemphasized? Curr. Opin. Cell Biol. 15 2003 547 556
71. T.J. Harris, and C.H. Siu Reciprocal raft-receptor interactions and the assembly of adhesion complexes Bioessays 24 2002 996 1003
72. A. Taraboulos, M. Scott, A. Semenov, D. Avrahami, L. Laszlo, S.B. Prusiner, and D. Avraham Cholesterol depletion and modification of COOH-terminal targeting sequence of the prion protein inhibit formation of the scrapie isoform J. Cell Biol. 129 1995 121 132
73. K. Kaneko, M. Vey, M. Scott, S. Pilkuhn, F.E. Cohen, and S.B. Prusiner COOH-terminal sequence of the cellular prion protein directs subcellular trafficking and controls conversion into the scrapie isoform Proc. Natl. Acad. Sci. U. S. A. 94 1997 2333 2338
74. R. Roberts, I. Lister, S. Schmitz, M. Walker, C. Veigel, J. Trinick, F. Buss, and J. Kendrick-Jones Myosin VI: cellular functions and motor properties Philos. Trans. R. Soc. Lond., B Biol. Sci. 359 2004 1931 1944
75. G. Vamosi, A. Bodnar, G. Vereb, A. Jenei, C.K. Goldman, J. Langowski, K. Toth, L. Matyus, J. Szollosi, T.A. Waldmann, and S. Damjanovich IL-2 and IL-15 receptor alpha-subunits are coexpressed in a supramolecular receptor cluster in lipid rafts of T cells Proc. Natl. Acad. Sci. U. S. A. 101 2004 11082 11087
76. P. Nagy, G. Vereb, Z. Sebestyen, G. Horvath, S.J. Lockett, S. Damjanovich, J.W. Park, T.M. Jovin, and J. Szollosi Lipid rafts and the local density of ErbB proteins influence the biological role of homo- and heteroassociations of ErbB2 J. Cell Sci. 115 2002 4251 4262
77. T. Zal, and N.R. Gascoigne Using live FRET imaging to reveal early protein-protein interactions during T cell activation Curr. Opin. Immunol. 16 2004 418 427
78. A. Miyawaki Visualization of the spatial and temporal dynamics of intracellular signaling Dev. Cell 4 2003 295 305
79. Y. Tsitrin, C.J. Morton, C. el-Bez, P. Paumard, M.C. Velluz, M. Adrian, J. Dubochet, M.W. Parker, S. Lanzavecchia, and F.G. van der Goot Conversion of a transmembrane to a water-soluble protein complex by a single point mutation Nat. Struct. Biol. 9 2002 729 733